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!_TAG_PROGRAM_AUTHOR	Darren Hiebert	/dhiebert@users.sourceforge.net/
!_TAG_PROGRAM_NAME	Exuberant Ctags	//
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AMPLITUDES_STD_DEVIATION_FILE_NAME	src/connectivity/conn_package/PackageReader.java	/^	private static final String AMPLITUDES_STD_DEVIATION_FILE_NAME="sigma_omega.txt";$/;"	f	class:PackageReader	file:
ASCIIFile	src/org/math/io/files/ASCIIFile.java	/^    public ASCIIFile(File f) {$/;"	m	class:ASCIIFile
ASCIIFile	src/org/math/io/files/ASCIIFile.java	/^public class ASCIIFile extends DataFile {$/;"	c
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ASIN_INDEXER	src/org/math/plot/utils/FastMath.java	/^    private static final double ASIN_INDEXER = 1\/ASIN_DELTA;$/;"	f	class:FastMath	file:
ASIN_MAX_VALUE_FOR_POWTABS	src/org/math/plot/utils/FastMath.java	/^    private static final double ASIN_MAX_VALUE_FOR_POWTABS = StrictMath.sin(Math.toRadians(88.6));$/;"	f	class:FastMath	file:
ASIN_MAX_VALUE_FOR_TABS	src/org/math/plot/utils/FastMath.java	/^    private static final double ASIN_MAX_VALUE_FOR_TABS = StrictMath.sin(Math.toRadians(73.0));$/;"	f	class:FastMath	file:
ASIN_PIO2_HI	src/org/math/plot/utils/FastMath.java	/^    private static final double ASIN_PIO2_HI = Double.longBitsToDouble(0x3FF921FB54442D18L); \/\/ 1.57079632679489655800e+00$/;"	f	class:FastMath	file:
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ASIN_POWTABS_ONE_DIV_MAX_VALUE	src/org/math/plot/utils/FastMath.java	/^    private static final double ASIN_POWTABS_ONE_DIV_MAX_VALUE = 1\/ASIN_MAX_VALUE_FOR_POWTABS;$/;"	f	class:FastMath	file:
ASIN_POWTABS_POWER	src/org/math/plot/utils/FastMath.java	/^    private static final int ASIN_POWTABS_POWER = 84;$/;"	f	class:FastMath	file:
ASIN_POWTABS_SIZE	src/org/math/plot/utils/FastMath.java	/^    private static final int ASIN_POWTABS_SIZE = USE_POWTABS_FOR_ASIN ? (1<<getTabSizePower(12)) + 1 : 0;$/;"	f	class:FastMath	file:
ASIN_POWTABS_SIZE_MINUS_ONE	src/org/math/plot/utils/FastMath.java	/^    private static final int ASIN_POWTABS_SIZE_MINUS_ONE = ASIN_POWTABS_SIZE - 1;$/;"	f	class:FastMath	file:
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ASIN_PS3	src/org/math/plot/utils/FastMath.java	/^    private static final double ASIN_PS3 = Double.longBitsToDouble(0xbfa48228b5688f3bL); \/\/ -4.00555345006794114027e-02$/;"	f	class:FastMath	file:
ASIN_PS4	src/org/math/plot/utils/FastMath.java	/^    private static final double ASIN_PS4 = Double.longBitsToDouble(0x3f49efe07501b288L); \/\/  7.91534994289814532176e-04$/;"	f	class:FastMath	file:
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ASIN_QS4	src/org/math/plot/utils/FastMath.java	/^    private static final double ASIN_QS4 = Double.longBitsToDouble(0x3fb3b8c5b12e9282L); \/\/  7.70381505559019352791e-02$/;"	f	class:FastMath	file:
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ATAN_AT1	src/org/math/plot/utils/FastMath.java	/^    private static final double ATAN_AT1 = Double.longBitsToDouble(0xbfc999999998ebc4L); \/\/ -1.99999999998764832476e-01$/;"	f	class:FastMath	file:
ATAN_AT10	src/org/math/plot/utils/FastMath.java	/^    private static final double ATAN_AT10 = Double.longBitsToDouble(0x3f90ad3ae322da11L); \/\/ 1.62858201153657823623e-02 $/;"	f	class:FastMath	file:
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ATAN_AT4	src/org/math/plot/utils/FastMath.java	/^    private static final double ATAN_AT4 = Double.longBitsToDouble(0x3fb745cdc54c206eL); \/\/  9.09088713343650656196e-02$/;"	f	class:FastMath	file:
ATAN_AT5	src/org/math/plot/utils/FastMath.java	/^    private static final double ATAN_AT5 = Double.longBitsToDouble(0xbfb3b0f2af749a6dL); \/\/ -7.69187620504482999495e-02$/;"	f	class:FastMath	file:
ATAN_AT6	src/org/math/plot/utils/FastMath.java	/^    private static final double ATAN_AT6 = Double.longBitsToDouble(0x3fb10d66a0d03d51L); \/\/  6.66107313738753120669e-02$/;"	f	class:FastMath	file:
ATAN_AT7	src/org/math/plot/utils/FastMath.java	/^    private static final double ATAN_AT7 = Double.longBitsToDouble(0xbfadde2d52defd9aL); \/\/ -5.83357013379057348645e-02$/;"	f	class:FastMath	file:
ATAN_AT8	src/org/math/plot/utils/FastMath.java	/^    private static final double ATAN_AT8 = Double.longBitsToDouble(0x3fa97b4b24760debL); \/\/  4.97687799461593236017e-02$/;"	f	class:FastMath	file:
ATAN_AT9	src/org/math/plot/utils/FastMath.java	/^    private static final double ATAN_AT9 = Double.longBitsToDouble(0xbfa2b4442c6a6c2fL); \/\/ -3.65315727442169155270e-02$/;"	f	class:FastMath	file:
ATAN_DELTA	src/org/math/plot/utils/FastMath.java	/^    private static final double ATAN_DELTA = ATAN_MAX_VALUE_FOR_TABS\/(ATAN_TABS_SIZE - 1);$/;"	f	class:FastMath	file:
ATAN_HI3	src/org/math/plot/utils/FastMath.java	/^    private static final double ATAN_HI3 = Double.longBitsToDouble(0x3ff921fb54442d18L); \/\/ 1.57079632679489655800e+00 atan(inf)hi$/;"	f	class:FastMath	file:
ATAN_INDEXER	src/org/math/plot/utils/FastMath.java	/^    private static final double ATAN_INDEXER = 1\/ATAN_DELTA;$/;"	f	class:FastMath	file:
ATAN_LO3	src/org/math/plot/utils/FastMath.java	/^    private static final double ATAN_LO3 = Double.longBitsToDouble(0x3c91a62633145c07L); \/\/ 6.12323399573676603587e-17 atan(inf)lo$/;"	f	class:FastMath	file:
ATAN_MAX_VALUE_FOR_TABS	src/org/math/plot/utils/FastMath.java	/^    private static final double ATAN_MAX_VALUE_FOR_TABS = StrictMath.tan(Math.toRadians(74.0));$/;"	f	class:FastMath	file:
ATAN_TABS_SIZE	src/org/math/plot/utils/FastMath.java	/^    private static final int ATAN_TABS_SIZE = (1<<getTabSizePower(12)) + 1;$/;"	f	class:FastMath	file:
AWTDrawer	src/org/math/plot/render/AWTDrawer.java	/^    public AWTDrawer(PlotCanvas _canvas) {$/;"	m	class:AWTDrawer
AWTDrawer	src/org/math/plot/render/AWTDrawer.java	/^public abstract class AWTDrawer extends AbstractDrawer {$/;"	c
AWTDrawer2D	src/org/math/plot/render/AWTDrawer2D.java	/^	public AWTDrawer2D(PlotCanvas _canvas) {$/;"	m	class:AWTDrawer2D
AWTDrawer2D	src/org/math/plot/render/AWTDrawer2D.java	/^public class AWTDrawer2D extends AWTDrawer {$/;"	c
AWTDrawer3D	src/org/math/plot/render/AWTDrawer3D.java	/^    public AWTDrawer3D(PlotCanvas _canvas) {$/;"	m	class:AWTDrawer3D
AWTDrawer3D	src/org/math/plot/render/AWTDrawer3D.java	/^public class AWTDrawer3D extends AWTDrawer {$/;"	c
AbstractDrawer	src/org/math/plot/render/AbstractDrawer.java	/^    public AbstractDrawer(PlotCanvas _canvas) {$/;"	m	class:AbstractDrawer
AbstractDrawer	src/org/math/plot/render/AbstractDrawer.java	/^public abstract class AbstractDrawer {$/;"	c
ActionMode	src/org/math/plot/canvas/PlotCanvas.java	/^    public int ActionMode;$/;"	f	class:PlotCanvas
Afferent	src/spiking/node/plasticity/Afferent.java	/^	public Afferent(Synapse syn, Double lastFireTime, Double oldPostSynapticWeight) {$/;"	m	class:Afferent
Afferent	src/spiking/node/plasticity/Afferent.java	/^public class Afferent {$/;"	c
AfferentManager	src/spiking/node/plasticity/AfferentManager.java	/^public class AfferentManager {$/;"	c
Array	src/org/math/plot/utils/Array.java	/^public class Array {$/;"	c
ArrayString	src/org/math/io/parser/ArrayString.java	/^public class ArrayString {$/;"	c
Axis	src/org/math/plot/plotObjects/Axis.java	/^	public Axis(Base b, String aS, Color c, int i) {$/;"	m	class:Axis
Axis	src/org/math/plot/plotObjects/Axis.java	/^public class Axis implements Plotable, BaseDependant, Editable {$/;"	c
BAR	src/org/math/plot/PlotPanel.java	/^    public final static String BAR = "BAR";$/;"	f	class:PlotPanel
BIG_ENDIAN	src/org/math/io/files/BinaryFile.java	/^    public static String BIG_ENDIAN = "BIG_ENDIAN";$/;"	f	class:BinaryFile
BIG_ENDIAN	src/org/math/io/stream/BinaryInputStream.java	/^    public static String BIG_ENDIAN = "BIG_ENDIAN";$/;"	f	class:BinaryInputStream
BIG_ENDIAN	src/org/math/io/stream/BinaryOutputStream.java	/^    public static String BIG_ENDIAN = "BIG_ENDIAN";$/;"	f	class:BinaryOutputStream
BOX	src/org/math/plot/PlotPanel.java	/^    public final static String BOX = "BOX";$/;"	f	class:PlotPanel
BURNING_TIME_DEF_VAL	src/utils/constants/Constants.java	/^	public static final Double BURNING_TIME_DEF_VAL=-1.0;$/;"	f	class:Constants
BadCurveException	src/utils/exceptions/BadCurveException.java	/^	public BadCurveException (String message){$/;"	m	class:BadCurveException
BadCurveException	src/utils/exceptions/BadCurveException.java	/^public class BadCurveException extends Exception{$/;"	c
BadParametersException	src/utils/exceptions/BadParametersException.java	/^	public BadParametersException (String message){$/;"	m	class:BadParametersException
BadParametersException	src/utils/exceptions/BadParametersException.java	/^public class BadParametersException extends Exception{$/;"	c
BarPlot	src/org/math/plot/plots/BarPlot.java	/^	public BarPlot(String n, Color c, boolean[][] _pattern, double[][] _XY) {$/;"	m	class:BarPlot
BarPlot	src/org/math/plot/plots/BarPlot.java	/^	public BarPlot(String n, Color c, double[][] _XY) {$/;"	m	class:BarPlot
BarPlot	src/org/math/plot/plots/BarPlot.java	/^	public BarPlot(String n, Color c, int _type, int _radius, double[][] _XY) {$/;"	m	class:BarPlot
BarPlot	src/org/math/plot/plots/BarPlot.java	/^public class BarPlot extends ScatterPlot {$/;"	c
Base	src/org/math/plot/plotObjects/Base.java	/^	public Base(double[] Xmi, double[] Xma, String[] scales) {$/;"	m	class:Base
Base	src/org/math/plot/plotObjects/Base.java	/^public class Base {$/;"	c
BaseDependant	src/org/math/plot/plotObjects/BaseDependant.java	/^public interface BaseDependant {$/;"	i
BaseLabel	src/org/math/plot/plotObjects/BaseLabel.java	/^	public BaseLabel(String l, Color c, double... rC) {$/;"	m	class:BaseLabel
BaseLabel	src/org/math/plot/plotObjects/BaseLabel.java	/^public class BaseLabel extends Label \/* implements BaseDependant *\/{$/;"	c
BaseLine	src/org/math/plot/plotObjects/BaseLine.java	/^	public BaseLine(Color col, double[] c1, double[] c2) {$/;"	m	class:BaseLine
BaseLine	src/org/math/plot/plotObjects/BaseLine.java	/^public class BaseLine extends Line {$/;"	c
BasePlot	src/org/math/plot/plotObjects/BasePlot.java	/^	public BasePlot(Base b, Color c, Axis... a) {$/;"	m	class:BasePlot
BasePlot	src/org/math/plot/plotObjects/BasePlot.java	/^	public BasePlot(Base b, Color c, String... as) {$/;"	m	class:BasePlot
BasePlot	src/org/math/plot/plotObjects/BasePlot.java	/^	public BasePlot(Base b, String... as) {$/;"	m	class:BasePlot
BasePlot	src/org/math/plot/plotObjects/BasePlot.java	/^public class BasePlot implements \/*Plotable,*\/BaseDependant {$/;"	c
BinaryFile	src/org/math/io/files/BinaryFile.java	/^    public BinaryFile(File f, String endian) {$/;"	m	class:BinaryFile
BinaryFile	src/org/math/io/files/BinaryFile.java	/^public class BinaryFile {$/;"	c
BinaryInputStream	src/org/math/io/stream/BinaryInputStream.java	/^    public BinaryInputStream(InputStream in, String endian) {$/;"	m	class:BinaryInputStream
BinaryInputStream	src/org/math/io/stream/BinaryInputStream.java	/^    public BinaryInputStream(InputStream in, boolean endian) {$/;"	m	class:BinaryInputStream
BinaryInputStream	src/org/math/io/stream/BinaryInputStream.java	/^public class BinaryInputStream extends InputStream {$/;"	c
BinaryOutputStream	src/org/math/io/stream/BinaryOutputStream.java	/^    public BinaryOutputStream(OutputStream out, String endian) {$/;"	m	class:BinaryOutputStream
BinaryOutputStream	src/org/math/io/stream/BinaryOutputStream.java	/^    public BinaryOutputStream(OutputStream out, boolean endian) {$/;"	m	class:BinaryOutputStream
BinaryOutputStream	src/org/math/io/stream/BinaryOutputStream.java	/^public class BinaryOutputStream extends OutputStream {$/;"	c
Bn	src/spiking/node/Node.java	/^	private Integer Bn;$/;"	f	class:Node	file:
Bn	src/utils/configuration/NodeCfg.java	/^	private Integer Bn;$/;"	f	class:NodeCfg	file:
BnTest	src/spiking/simulator/SpikingNeuralSimulator.java	/^	public static final Integer BnTest=1;$/;"	f	class:SpikingNeuralSimulator
BoxPlot2D	src/org/math/plot/plots/BoxPlot2D.java	/^    public BoxPlot2D(double[][] _XY, double[][] w, Color c, String n) {$/;"	m	class:BoxPlot2D
BoxPlot2D	src/org/math/plot/plots/BoxPlot2D.java	/^public class BoxPlot2D extends Plot {$/;"	c
BoxPlot3D	src/org/math/plot/plots/BoxPlot3D.java	/^    public BoxPlot3D(double[][] _XY, double[][] w, Color c, String n) {$/;"	m	class:BoxPlot3D
BoxPlot3D	src/org/math/plot/plots/BoxPlot3D.java	/^public class BoxPlot3D extends Plot {$/;"	c
BurningNeuron	src/spiking/node/neuron/BurningNeuron.java	/^	public BurningNeuron(Integer burningRegionId, Long burningNeuronId){$/;"	m	class:BurningNeuron
BurningNeuron	src/spiking/node/neuron/BurningNeuron.java	/^public class BurningNeuron {$/;"	c
CBRT_LO_BITS	src/org/math/plot/utils/FastMath.java	/^    private static final int CBRT_LO_BITS = getTabSizePower(12);$/;"	f	class:FastMath	file:
CBRT_LO_TAB_SIZE	src/org/math/plot/utils/FastMath.java	/^    private static final int CBRT_LO_TAB_SIZE = (1<<CBRT_LO_BITS);$/;"	f	class:FastMath	file:
CENTRES_FILE_NAME	src/connectivity/conn_package/PackageReader.java	/^	private static final String CENTRES_FILE_NAME="centres.txt";$/;"	f	class:PackageReader	file:
CHAR_BY_DIGIT	src/org/math/plot/utils/NumbersUtils.java	/^    private final static char[] CHAR_BY_DIGIT;$/;"	f	class:NumbersUtils	file:
COLORLIST	src/org/math/plot/PlotPanel.java	/^    public final static Color[] COLORLIST = {Color.BLUE, Color.RED, Color.GREEN, Color.YELLOW, Color.ORANGE, Color.PINK, Color.CYAN, Color.MAGENTA};$/;"	f	class:PlotPanel
CONNECTIONS_TYPE_FILE_NAME	src/connectivity/conn_package/PackageReader.java	/^	private static final String CONNECTIONS_TYPE_FILE_NAME="conn_type.txt";$/;"	f	class:PackageReader	file:
CONSTANT	src/spiking/node/external_inputs/ExternalInput.java	/^	public final static int CONSTANT = 1;$/;"	f	class:ExternalInput
CONTINOUS_LINE	src/org/math/plot/render/AbstractDrawer.java	/^    public final static int CONTINOUS_LINE = 1;$/;"	f	class:AbstractDrawer
CROSS_DOT	src/org/math/plot/render/AbstractDrawer.java	/^    public final static int CROSS_DOT = 2;$/;"	f	class:AbstractDrawer
ClipBoardPrintable	src/org/math/io/ClipBoardPrintable.java	/^public interface ClipBoardPrintable {$/;"	i
CloudPlot2D	src/org/math/plot/plots/CloudPlot2D.java	/^    public CloudPlot2D(String n, Color c, double[][] _XYcard, double wX, double wY) {$/;"	m	class:CloudPlot2D
CloudPlot2D	src/org/math/plot/plots/CloudPlot2D.java	/^public class CloudPlot2D extends Plot {$/;"	c
CloudPlot3D	src/org/math/plot/plots/CloudPlot3D.java	/^    public CloudPlot3D(String n, Color c, double[][] _XYcard, double wX, double wY, double wZ) {$/;"	m	class:CloudPlot3D
CloudPlot3D	src/org/math/plot/plots/CloudPlot3D.java	/^public class CloudPlot3D extends Plot {$/;"	c
CollectedBurn	src/utils/statistics/CollectedBurn.java	/^	public CollectedBurn($/;"	m	class:CollectedBurn
CollectedBurn	src/utils/statistics/CollectedBurn.java	/^public class CollectedBurn {$/;"	c
CollectedFire	src/utils/statistics/CollectedFire.java	/^	public CollectedFire($/;"	m	class:CollectedFire
CollectedFire	src/utils/statistics/CollectedFire.java	/^public class CollectedFire {$/;"	c
CompressedFire	src/utils/tools/CompressedFire.java	/^	public CompressedFire(int regionId, long neuronId, double fireTime, Long maxN, Double reducingFactor ){$/;"	m	class:CompressedFire
CompressedFire	src/utils/tools/CompressedFire.java	/^public class CompressedFire implements Comparable<CompressedFire>{$/;"	c
ConnectivityPackageManager	src/connectivity/nodes/ConnectivityPackageManager.java	/^public class ConnectivityPackageManager {$/;"	c
Constants	src/utils/constants/Constants.java	/^public class Constants {$/;"	c
D	src/spiking/node/neuron/NodeNeuronsManager.java	/^	private Double D=0.001;$/;"	f	class:NodeNeuronsManager	file:
D	src/utils/configuration/NeuManCfg.java	/^	private Double D;$/;"	f	class:NeuManCfg	file:
DEFAULT_BORDER	src/org/math/plot/render/Projection.java	/^    public static double DEFAULT_BORDER = 0.15;$/;"	f	class:Projection
DEFAULT_COLOR	src/org/math/plot/plotObjects/BasePlot.java	/^	public static Color DEFAULT_COLOR = Color.DARK_GRAY;$/;"	f	class:BasePlot
DEFAULT_COLOR	src/org/math/plot/render/AbstractDrawer.java	/^    public final static Color DEFAULT_COLOR = Color.BLACK;$/;"	f	class:AbstractDrawer
DEFAULT_DOT_RADIUS	src/org/math/plot/render/AbstractDrawer.java	/^    public final static int DEFAULT_DOT_RADIUS = 2;$/;"	f	class:AbstractDrawer
DEFAULT_FONT	src/org/math/plot/render/AbstractDrawer.java	/^    public final static Font DEFAULT_FONT = new Font("Arial", Font.PLAIN, 10);$/;"	f	class:AbstractDrawer
DEFAULT_LINE_WIDTH	src/org/math/plot/render/AbstractDrawer.java	/^    public final static int DEFAULT_LINE_WIDTH = 1;$/;"	f	class:AbstractDrawer
DIV_SHIFT_BY_RADIX	src/org/math/plot/utils/NumbersUtils.java	/^    private static final int[] DIV_SHIFT_BY_RADIX;$/;"	f	class:NumbersUtils	file:
DOTTED_LINE	src/org/math/plot/render/AbstractDrawer.java	/^    public final static int DOTTED_LINE = 2;$/;"	f	class:AbstractDrawer
DOT_SQUARE_PATTERN	src/org/math/plot/render/AbstractDrawer.java	/^    public final static boolean[][] DOT_SQUARE_PATTERN = stringToPattern("_", "######", "#____#", "#____#", "#____#", "#____#", "######");$/;"	f	class:AbstractDrawer
DOT_TRIANGLE_PATTERN	src/org/math/plot/render/AbstractDrawer.java	/^    public final static boolean[][] DOT_TRIANGLE_PATTERN = stringToPattern("_", "___#___", "__#_#__", "__#_#__", "_#___#_", "_#___#_", "#######");$/;"	f	class:AbstractDrawer
DOUBLE_BEFORE_60	src/org/math/plot/utils/FastMath.java	/^    private static final double DOUBLE_BEFORE_60 = Math.nextAfter(60.0, 0.0);$/;"	f	class:FastMath	file:
DataFile	src/org/math/io/files/DataFile.java	/^    public DataFile(File f) {$/;"	m	class:DataFile
DataFile	src/org/math/io/files/DataFile.java	/^public abstract class DataFile {$/;"	c
DataFrame	src/org/math/plot/components/DataFrame.java	/^    public DataFrame(PlotCanvas p) {$/;"	m	class:DataFrame
DataFrame	src/org/math/plot/components/DataFrame.java	/^public class DataFrame extends JFrame {$/;"	c
DataPanel	src/org/math/plot/DataPanel.java	/^    public DataPanel() {$/;"	m	class:DataPanel
DataPanel	src/org/math/plot/DataPanel.java	/^public abstract class DataPanel extends JPanel implements ComponentListener, FilePrintable, ClipBoardPrintable, StringPrintable {$/;"	c
DataPanel	src/org/math/plot/components/DatasFrame.java	/^		public DataPanel(\/*DatasFrame _dframe,*\/Plot _plot) {$/;"	m	class:DatasFrame.DataPanel
DataPanel	src/org/math/plot/components/DatasFrame.java	/^	public class DataPanel extends JPanel {$/;"	c	class:DatasFrame
DataSelectPanel	src/org/math/plot/DataSelectPanel.java	/^    public DataSelectPanel(Object[][] data, int dimension, String... parametersNames) {$/;"	m	class:DataSelectPanel
DataSelectPanel	src/org/math/plot/DataSelectPanel.java	/^public class DataSelectPanel extends JPanel {$/;"	c
DataSelectTable	src/org/math/plot/DataSelectTable.java	/^	public DataSelectTable(Object[][] data, int dimension, String... parametersNames) {$/;"	m	class:DataSelectTable
DataSelectTable	src/org/math/plot/DataSelectTable.java	/^public class DataSelectTable extends JPanel {$/;"	c
DataToolBar	src/org/math/plot/components/DataToolBar.java	/^	public DataToolBar(DataPanel dp) {$/;"	m	class:DataToolBar
DataToolBar	src/org/math/plot/components/DataToolBar.java	/^public class DataToolBar extends JToolBar {$/;"	c
DatasFrame	src/org/math/plot/components/DatasFrame.java	/^	public DatasFrame(PlotCanvas p, LegendPanel l) {$/;"	m	class:DatasFrame
DatasFrame	src/org/math/plot/components/DatasFrame.java	/^public class DatasFrame extends JFrame {$/;"	c
DefaultDataPanel	src/org/math/plot/plots/Plot.java	/^        public DefaultDataPanel(\/*DataFrame _dframe,*\/Plot _plot) {$/;"	m	class:Plot.DefaultDataPanel
DefaultDataPanel	src/org/math/plot/plots/Plot.java	/^    public class DefaultDataPanel extends DataPanel {$/;"	c	class:Plot
DensityLayerPlot	src/org/math/plot/plots/DensityLayerPlot.java	/^	public DensityLayerPlot(Plot p, int a, double[] quantiles) {$/;"	m	class:DensityLayerPlot
DensityLayerPlot	src/org/math/plot/plots/DensityLayerPlot.java	/^	public DensityLayerPlot(Plot p, int a, double[][] quantiles) {$/;"	m	class:DensityLayerPlot
DensityLayerPlot	src/org/math/plot/plots/DensityLayerPlot.java	/^public class DensityLayerPlot extends LayerPlot {$/;"	c
DoubleWrapper	src/org/math/plot/utils/FastMath.java	/^public class DoubleWrapper {$/;"	c	class:FastMath
E	src/org/math/plot/utils/FastMath.java	/^    public static final double E = Math.E;$/;"	f	class:FastMath
EAST	src/org/math/plot/PlotPanel.java	/^    public final static String EAST = BorderLayout.EAST;$/;"	f	class:PlotPanel
EDIT_COLOR	src/org/math/plot/canvas/PlotCanvas.java	/^    public static Color EDIT_COLOR = Color.BLACK;$/;"	f	class:PlotCanvas
EPSILON	src/utils/constants/Constants.java	/^	public static final Double EPSILON=0.000001;$/;"	f	class:Constants
ETAM	src/utils/constants/Constants.java	/^	public static final Double ETAM = 0.05;$/;"	f	class:Constants
ETAP	src/utils/constants/Constants.java	/^	public static final Double ETAP = 0.01;$/;"	f	class:Constants
EXC2EXC	src/spiking/node/NodesInterconnection.java	/^	public static final Integer EXC2EXC=4;$/;"	f	class:NodesInterconnection
EXC2INH	src/spiking/node/NodesInterconnection.java	/^	public static final Integer EXC2INH=5;$/;"	f	class:NodesInterconnection
EXC2MIXED	src/spiking/node/NodesInterconnection.java	/^	public static final Integer EXC2MIXED=3;$/;"	f	class:NodesInterconnection
EXCITATORY_PRESYNAPTIC_DEF_VAL	src/utils/constants/Constants.java	/^	public static final Double EXCITATORY_PRESYNAPTIC_DEF_VAL=1.0;$/;"	f	class:Constants
EXP_LO_DISTANCE_TO_ZERO	src/org/math/plot/utils/FastMath.java	/^    private static final int EXP_LO_DISTANCE_TO_ZERO = (1<<EXP_LO_DISTANCE_TO_ZERO_POT);$/;"	f	class:FastMath	file:
EXP_LO_DISTANCE_TO_ZERO_POT	src/org/math/plot/utils/FastMath.java	/^    private static final int EXP_LO_DISTANCE_TO_ZERO_POT = 0;$/;"	f	class:FastMath	file:
EXP_LO_INDEXING	src/org/math/plot/utils/FastMath.java	/^    private static final int EXP_LO_INDEXING = EXP_LO_TAB_MID_INDEX\/EXP_LO_DISTANCE_TO_ZERO;$/;"	f	class:FastMath	file:
EXP_LO_INDEXING_DIV_SHIFT	src/org/math/plot/utils/FastMath.java	/^    private static final int EXP_LO_INDEXING_DIV_SHIFT = EXP_LO_TAB_SIZE_POT-1-EXP_LO_DISTANCE_TO_ZERO_POT;$/;"	f	class:FastMath	file:
EXP_LO_TAB_MID_INDEX	src/org/math/plot/utils/FastMath.java	/^    private static final int EXP_LO_TAB_MID_INDEX = ((EXP_LO_TAB_SIZE-1)\/2);$/;"	f	class:FastMath	file:
EXP_LO_TAB_SIZE	src/org/math/plot/utils/FastMath.java	/^    private static final int EXP_LO_TAB_SIZE = (1<<EXP_LO_TAB_SIZE_POT)+1;$/;"	f	class:FastMath	file:
EXP_LO_TAB_SIZE_POT	src/org/math/plot/utils/FastMath.java	/^    private static final int EXP_LO_TAB_SIZE_POT = getTabSizePower(11);$/;"	f	class:FastMath	file:
EXP_MIN_INT_LIMIT	src/org/math/plot/utils/FastMath.java	/^    private static final double EXP_MIN_INT_LIMIT = -705;$/;"	f	class:FastMath	file:
EXP_OVERFLOW_LIMIT	src/org/math/plot/utils/FastMath.java	/^    private static final double EXP_OVERFLOW_LIMIT = Double.longBitsToDouble(0x40862E42FEFA39EFL); \/\/ 7.09782712893383973096e+02$/;"	f	class:FastMath	file:
EXP_QUICK_A	src/org/math/plot/utils/FastMath.java	/^    private static final double EXP_QUICK_A = TWO_POW_52\/LOG_2;$/;"	f	class:FastMath	file:
EXP_QUICK_B	src/org/math/plot/utils/FastMath.java	/^    private static final double EXP_QUICK_B = MAX_DOUBLE_EXPONENT * TWO_POW_52;$/;"	f	class:FastMath	file:
EXP_QUICK_C	src/org/math/plot/utils/FastMath.java	/^    private static final double EXP_QUICK_C = Math.ceil((StrictMath.log(LOG_2+2\/Math.E) - LOG_2 - StrictMath.log(LOG_2)) * EXP_QUICK_A);$/;"	f	class:FastMath	file:
EXP_UNDERFLOW_LIMIT	src/org/math/plot/utils/FastMath.java	/^    private static final double EXP_UNDERFLOW_LIMIT = Double.longBitsToDouble(0xC0874910D52D3051L); \/\/ -7.45133219101941108420e+02$/;"	f	class:FastMath	file:
EXTERNAL_AMPLITUDE_DEF_VALUE	src/spiking/node/external_inputs/ExternalInput.java	/^	public final static Double EXTERNAL_AMPLITUDE_DEF_VALUE = 0.1;$/;"	f	class:ExternalInput
EXTERNAL_SOURCES_PRESYNAPTIC_DEF_VAL	src/utils/constants/Constants.java	/^	public static final Double EXTERNAL_SOURCES_PRESYNAPTIC_DEF_VAL=1.0;$/;"	f	class:Constants
EXTERNAL_TIME_TO_FIRE_DEF_VAL	src/utils/constants/Constants.java	/^	public static final Double EXTERNAL_TIME_TO_FIRE_DEF_VAL=Double.MAX_VALUE;$/;"	f	class:Constants
Editable	src/org/math/plot/plotObjects/Editable.java	/^public interface Editable {$/;"	i
Experiment	src/utils/experiment/Experiment.java	/^public class Experiment {$/;"	c
ExternalInput	src/spiking/node/external_inputs/ExternalInput.java	/^	public ExternalInput($/;"	m	class:ExternalInput
ExternalInput	src/spiking/node/external_inputs/ExternalInput.java	/^public class ExternalInput {$/;"	c
FastMath	src/org/math/plot/utils/FastMath.java	/^    private FastMath() {$/;"	m	class:FastMath	file:
FastMath	src/org/math/plot/utils/FastMath.java	/^public strictfp final class FastMath {$/;"	c
FastMath	src/utils/math/FastMath.java	/^	public FastMath(){$/;"	m	class:FastMath
FastMath	src/utils/math/FastMath.java	/^public class FastMath{$/;"	c
FastScatterPlotter	src/utils/plotter/FastScatterPlotter.java	/^	public FastScatterPlotter(String title, float [] x, float[] y) {$/;"	m	class:FastScatterPlotter
FastScatterPlotter	src/utils/plotter/FastScatterPlotter.java	/^public class FastScatterPlotter extends ApplicationFrame{$/;"	c
FilePrintable	src/org/math/io/FilePrintable.java	/^public interface FilePrintable {$/;"	i
FiringNeuron	src/spiking/node/FiringNeuron.java	/^	public FiringNeuron(Integer firingRegionId, Long firingNeuronId, Double firingTime, Boolean isExcitatory, Boolean isExternal){$/;"	m	class:FiringNeuron
FiringNeuron	src/spiking/node/FiringNeuron.java	/^public class FiringNeuron {$/;"	c
FixedBurnSpike	src/spiking/node/spikes/FixedBurnSpike.java	/^	public FixedBurnSpike(Synapse syn, Double burnTime, Double fireTime) {$/;"	m	class:FixedBurnSpike
FixedBurnSpike	src/spiking/node/spikes/FixedBurnSpike.java	/^public class FixedBurnSpike implements Comparable<FixedBurnSpike>, Serializable{$/;"	c
FrameView	src/org/math/plot/FrameView.java	/^	public FrameView(JComponent... panels) {$/;"	m	class:FrameView
FrameView	src/org/math/plot/FrameView.java	/^	public FrameView(JPanel panel) {$/;"	m	class:FrameView
FrameView	src/org/math/plot/FrameView.java	/^	public FrameView(Plot2DCanvas... canvas) {$/;"	m	class:FrameView
FrameView	src/org/math/plot/FrameView.java	/^	public FrameView(Plot3DCanvas... canvas) {$/;"	m	class:FrameView
FrameView	src/org/math/plot/FrameView.java	/^	public FrameView(String title, JComponent panel) {$/;"	m	class:FrameView
FrameView	src/org/math/plot/FrameView.java	/^public class FrameView extends JFrame {$/;"	c
GRID	src/org/math/plot/PlotPanel.java	/^    public final static String GRID = "GRID";$/;"	f	class:PlotPanel
GaussianDensityLayerPlot	src/org/math/plot/plots/GaussianDensityLayerPlot.java	/^	public GaussianDensityLayerPlot(Plot p, int ax, double sigma) {$/;"	m	class:GaussianDensityLayerPlot
GaussianDensityLayerPlot	src/org/math/plot/plots/GaussianDensityLayerPlot.java	/^	public GaussianDensityLayerPlot(Plot p, int ax, double[] sigma) {$/;"	m	class:GaussianDensityLayerPlot
GaussianDensityLayerPlot	src/org/math/plot/plots/GaussianDensityLayerPlot.java	/^public class GaussianDensityLayerPlot extends LayerPlot {$/;"	c
GridPlot3D	src/org/math/plot/plots/GridPlot3D.java	/^    public GridPlot3D(String n, Color c, double[] _X, double[] _Y, double[][] _Z) {$/;"	m	class:GridPlot3D
GridPlot3D	src/org/math/plot/plots/GridPlot3D.java	/^public class GridPlot3D extends Plot {$/;"	c
HISTOGRAM	src/org/math/plot/PlotPanel.java	/^    public final static String HISTOGRAM = "HISTOGRAM";$/;"	f	class:PlotPanel
HORIZONTAL	src/org/math/plot/components/LegendPanel.java	/^    public static int HORIZONTAL = 1;$/;"	f	class:LegendPanel
Histogram	src/org/math/plot/utils/Histogram.java	/^public class Histogram {$/;"	c
HistogramPlot2D	src/org/math/plot/plots/HistogramPlot2D.java	/^    public HistogramPlot2D(String n, Color c, double[][] _XY, double w) {$/;"	m	class:HistogramPlot2D
HistogramPlot2D	src/org/math/plot/plots/HistogramPlot2D.java	/^    public HistogramPlot2D(String n, Color c, double[][] _XY, double w, double _offsetCenter_perWidth, double _factorWidth) {$/;"	m	class:HistogramPlot2D
HistogramPlot2D	src/org/math/plot/plots/HistogramPlot2D.java	/^    public HistogramPlot2D(String n, Color c, double[][] _XY, double[] w) {$/;"	m	class:HistogramPlot2D
HistogramPlot2D	src/org/math/plot/plots/HistogramPlot2D.java	/^    public HistogramPlot2D(String n, Color c, double[][] _XY, double[] w, double _offsetCenter_perWidth, double _factorWidth) {$/;"	m	class:HistogramPlot2D
HistogramPlot2D	src/org/math/plot/plots/HistogramPlot2D.java	/^public class HistogramPlot2D extends Plot {$/;"	c
HistogramPlot3D	src/org/math/plot/plots/HistogramPlot3D.java	/^    public HistogramPlot3D(String n, Color c, double[][] _XY, double wX, double wY) {$/;"	m	class:HistogramPlot3D
HistogramPlot3D	src/org/math/plot/plots/HistogramPlot3D.java	/^    public HistogramPlot3D(String n, Color c, double[][] _XY, double[] w) {$/;"	m	class:HistogramPlot3D
HistogramPlot3D	src/org/math/plot/plots/HistogramPlot3D.java	/^    public HistogramPlot3D(String n, Color c, double[][] _XY, double[][] w) {$/;"	m	class:HistogramPlot3D
HistogramPlot3D	src/org/math/plot/plots/HistogramPlot3D.java	/^public class HistogramPlot3D extends Plot {$/;"	c
IBI	src/spiking/node/Node.java	/^	private Double IBI;$/;"	f	class:Node	file:
IBI	src/utils/configuration/NodeCfg.java	/^	private Double IBI;$/;"	f	class:NodeCfg	file:
IBITest	src/spiking/simulator/SpikingNeuralSimulator.java	/^	public static final Double IBITest=0.001;$/;"	f	class:SpikingNeuralSimulator
IEEEremainder	src/org/math/plot/utils/FastMath.java	/^    public static double IEEEremainder(double f1, double f2) {$/;"	m	class:FastMath
INH2EXC	src/spiking/node/NodesInterconnection.java	/^	public static final Integer INH2EXC=7;$/;"	f	class:NodesInterconnection
INH2INH	src/spiking/node/NodesInterconnection.java	/^	public static final Integer INH2INH=8;$/;"	f	class:NodesInterconnection
INH2MIXED	src/spiking/node/NodesInterconnection.java	/^	public static final Integer INH2MIXED=6;$/;"	f	class:NodesInterconnection
INHIBITORY_PRESYNAPTIC_DEF_VAL	src/utils/constants/Constants.java	/^	public static final Double INHIBITORY_PRESYNAPTIC_DEF_VAL=-1.0;$/;"	f	class:Constants
INVISIBLE	src/org/math/plot/PlotPanel.java	/^    public final static String INVISIBLE = "INVISIBLE";$/;"	f	class:PlotPanel
INVISIBLE	src/org/math/plot/components/LegendPanel.java	/^    public static int INVISIBLE = -1;$/;"	f	class:LegendPanel
INVPIO2	src/org/math/plot/utils/FastMath.java	/^    private static final double INVPIO2 = Double.longBitsToDouble(0x3FE45F306DC9C883L); \/\/ 6.36619772367581382433e-01 53 bits of 2\/pi$/;"	f	class:FastMath	file:
INVTWOPI	src/org/math/plot/utils/FastMath.java	/^    private static final double INVTWOPI = INVPIO2\/4;$/;"	f	class:FastMath	file:
INV_LOG_10	src/org/math/plot/utils/FastMath.java	/^    private static final double INV_LOG_10 = 1.0\/StrictMath.log(10.0);$/;"	f	class:FastMath	file:
IntWrapper	src/org/math/plot/utils/FastMath.java	/^public class IntWrapper {$/;"	c	class:FastMath
IntegerCouple	src/utils/tools/IntegerCouple.java	/^	public IntegerCouple(Integer src, Integer dst){$/;"	m	class:IntegerCouple
IntegerCouple	src/utils/tools/IntegerCouple.java	/^public class IntegerCouple implements Comparable<IntegerCouple>{$/;"	c
InterNodeBurningSpike	src/spiking/internode/InterNodeBurningSpike.java	/^	public InterNodeBurningSpike(InterNodeSpike internodeSpike, Double timeToBurn) {$/;"	m	class:InterNodeBurningSpike
InterNodeBurningSpike	src/spiking/internode/InterNodeBurningSpike.java	/^public class InterNodeBurningSpike implements Comparable<InterNodeBurningSpike>, Serializable{$/;"	c
InterNodeSpike	src/spiking/internode/InterNodeSpike.java	/^	public InterNodeSpike (Synapse syn, Double burnTime, Double fireTime, Double axonalDelay){$/;"	m	class:InterNodeSpike
InterNodeSpike	src/spiking/internode/InterNodeSpike.java	/^public class InterNodeSpike implements Serializable{$/;"	c
LEDataInputStream	src/org/math/io/littleendian/LEDataInputStream.java	/^    public LEDataInputStream(InputStream in) {$/;"	m	class:LEDataInputStream
LEDataInputStream	src/org/math/io/littleendian/LEDataInputStream.java	/^public class LEDataInputStream implements DataInput {$/;"	c
LEDataOutputStream	src/org/math/io/littleendian/LEDataOutputStream.java	/^    public LEDataOutputStream(OutputStream out) {$/;"	m	class:LEDataOutputStream
LEDataOutputStream	src/org/math/io/littleendian/LEDataOutputStream.java	/^public class LEDataOutputStream implements DataOutput {$/;"	c
LENGTH_DEF_VAL	src/utils/constants/Constants.java	/^	public static final Double LENGTH_DEF_VAL = null;$/;"	f	class:Constants
LERandomAccessFile	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public LERandomAccessFile(File f, String rw) throws IOException {$/;"	m	class:LERandomAccessFile
LERandomAccessFile	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public LERandomAccessFile(String f, String rw) throws IOException {$/;"	m	class:LERandomAccessFile
LERandomAccessFile	src/org/math/io/littleendian/LERandomAccessFile.java	/^public class LERandomAccessFile implements DataInput, DataOutput {$/;"	c
LINE	src/org/math/plot/PlotPanel.java	/^    public final static String LINE = "LINE";$/;"	f	class:PlotPanel
LINEAR	src/org/math/plot/plotObjects/Base.java	/^	public final static String LINEAR = "lin";$/;"	f	class:Base
LITTLE_ENDIAN	src/org/math/io/files/BinaryFile.java	/^    public static String LITTLE_ENDIAN = "LITTLE_ENDIAN";$/;"	f	class:BinaryFile
LITTLE_ENDIAN	src/org/math/io/stream/BinaryInputStream.java	/^    public static String LITTLE_ENDIAN = "LITTLE_ENDIAN";$/;"	f	class:BinaryInputStream
LITTLE_ENDIAN	src/org/math/io/stream/BinaryOutputStream.java	/^    public static String LITTLE_ENDIAN = "LITTLE_ENDIAN";$/;"	f	class:BinaryOutputStream
LOGARITHM	src/org/math/plot/plotObjects/Base.java	/^	public final static String LOGARITHM = "log";$/;"	f	class:Base
LOG_2	src/org/math/plot/utils/FastMath.java	/^    private static final double LOG_2 = StrictMath.log(2.0);$/;"	f	class:FastMath	file:
LOG_BITS	src/org/math/plot/utils/FastMath.java	/^    private static final int LOG_BITS = getTabSizePower(12);$/;"	f	class:FastMath	file:
LOG_DOUBLE_MAX_VALUE	src/org/math/plot/utils/FastMath.java	/^    private static final double LOG_DOUBLE_MAX_VALUE = StrictMath.log(Double.MAX_VALUE);$/;"	f	class:FastMath	file:
LOG_TAB_SIZE	src/org/math/plot/utils/FastMath.java	/^    private static final int LOG_TAB_SIZE = (1<<LOG_BITS);$/;"	f	class:FastMath	file:
LOG_TWO_POW_27	src/org/math/plot/utils/FastMath.java	/^    private static final double LOG_TWO_POW_27 = StrictMath.log(TWO_POW_27);$/;"	f	class:FastMath	file:
Label	src/org/math/plot/plotObjects/Label.java	/^	public Label(String l, Color col, double... c) {$/;"	m	class:Label
Label	src/org/math/plot/plotObjects/Label.java	/^	public Label(String l, double... c) {$/;"	m	class:Label
Label	src/org/math/plot/plotObjects/Label.java	/^	public Label(double... c) {$/;"	m	class:Label
Label	src/org/math/plot/plotObjects/Label.java	/^public class Label implements Plotable {$/;"	c
LayerPlot	src/org/math/plot/plots/LayerPlot.java	/^	public LayerPlot(String name, Plot p) {$/;"	m	class:LayerPlot
LayerPlot	src/org/math/plot/plots/LayerPlot.java	/^public abstract class LayerPlot extends Plot {$/;"	c
Legend	src/org/math/plot/components/LegendPanel.java	/^        public Legend(Plot p) {$/;"	m	class:LegendPanel.Legend
Legend	src/org/math/plot/components/LegendPanel.java	/^    public class Legend extends JPanel {$/;"	c	class:LegendPanel
LegendPanel	src/org/math/plot/components/LegendPanel.java	/^    public LegendPanel(PlotPanel _plotPanel, int _orientation) {$/;"	m	class:LegendPanel
LegendPanel	src/org/math/plot/components/LegendPanel.java	/^public class LegendPanel extends JPanel implements ComponentListener {$/;"	c
Line	src/org/math/plot/plotObjects/Line.java	/^	public Line(Color col, double[] c1, double[] c2) {$/;"	m	class:Line
Line	src/org/math/plot/plotObjects/Line.java	/^public class Line implements Plotable {$/;"	c
LinePlot	src/org/math/plot/plots/LinePlot.java	/^	public LinePlot(String n, Color c, boolean[][] _pattern, double[][] _XY) {$/;"	m	class:LinePlot
LinePlot	src/org/math/plot/plots/LinePlot.java	/^	public LinePlot(String n, Color c, double[][] _XY) {$/;"	m	class:LinePlot
LinePlot	src/org/math/plot/plots/LinePlot.java	/^	public LinePlot(String n, Color c, int _type, int _radius, double[][] _XY) {$/;"	m	class:LinePlot
LinePlot	src/org/math/plot/plots/LinePlot.java	/^public class LinePlot extends ScatterPlot {$/;"	c
LongCouple	src/utils/tools/LongCouple.java	/^	public LongCouple(Long src, Long dst){$/;"	m	class:LongCouple
LongCouple	src/utils/tools/LongCouple.java	/^public class LongCouple implements Comparable<LongCouple>, Serializable{$/;"	c
M	src/org/math/plot/MatrixTablePanel.java	/^    private Object[][] M;$/;"	f	class:MatrixTablePanel	file:
MAX_AMPLITUDE_DEF	src/connectivity/conn_package/PackageReader.java	/^	public static final Double MAX_AMPLITUDE_DEF=0.0;$/;"	f	class:PackageReader
MAX_DOUBLE_EXPONENT	src/org/math/plot/utils/FastMath.java	/^    private static final int MAX_DOUBLE_EXPONENT = 1023;$/;"	f	class:FastMath	file:
MAX_DOUBLE_EXPONENT	src/org/math/plot/utils/NumbersUtils.java	/^    private static final int MAX_DOUBLE_EXPONENT = 1023;$/;"	f	class:NumbersUtils	file:
MAX_FLOAT_EXPONENT	src/org/math/plot/utils/FastMath.java	/^    private static final int MAX_FLOAT_EXPONENT = 127;$/;"	f	class:FastMath	file:
MAX_NBR_OF_NEG_INT_DIGITS_BY_RADIX	src/org/math/plot/utils/NumbersUtils.java	/^    private final static int[] MAX_NBR_OF_NEG_INT_DIGITS_BY_RADIX = new int[Character.MAX_RADIX+1];$/;"	f	class:NumbersUtils	file:
MAX_NBR_OF_NEG_LONG_DIGITS_BY_RADIX	src/org/math/plot/utils/NumbersUtils.java	/^    private final static int[] MAX_NBR_OF_NEG_LONG_DIGITS_BY_RADIX = new int[Character.MAX_RADIX+1];$/;"	f	class:NumbersUtils	file:
MAX_NE_EN_RATIO_DEF	src/connectivity/conn_package/PackageReader.java	/^	public static final Double MAX_NE_EN_RATIO_DEF=0.0;$/;"	f	class:PackageReader
MAX_TRACT_LENGTH	src/spiking/node/NodesManager.java	/^	public static final Double MAX_TRACT_LENGTH=100000.0;$/;"	f	class:NodesManager
MAX_TRACT_LENGTH	src/spiking/node/NodesManager.java~	/^	public static final Double MAX_TRACT_LENGTH=100000.0;$/;"	f	class:NodesManager
MIN_AMPLITUDE_DEF	src/connectivity/conn_package/PackageReader.java	/^	public static final Double MIN_AMPLITUDE_DEF=Double.MAX_VALUE;$/;"	f	class:PackageReader
MIN_DOUBLE_EXPONENT	src/org/math/plot/utils/FastMath.java	/^    private static final int MIN_DOUBLE_EXPONENT = -1074;$/;"	f	class:FastMath	file:
MIN_DOUBLE_EXPONENT	src/org/math/plot/utils/NumbersUtils.java	/^    private static final int MIN_DOUBLE_EXPONENT = -1074;$/;"	f	class:NumbersUtils	file:
MIN_DOUBLE_NORMAL	src/org/math/plot/utils/FastMath.java	/^    private static final double MIN_DOUBLE_NORMAL = Double.longBitsToDouble(0x0010000000000000L); \/\/ 2.2250738585072014E-308$/;"	f	class:FastMath	file:
MIN_NE_EN_RATIO_DEF	src/connectivity/conn_package/PackageReader.java	/^	public static final Double MIN_NE_EN_RATIO_DEF=Double.MAX_VALUE;$/;"	f	class:PackageReader
MIXED2EXC	src/spiking/node/NodesInterconnection.java	/^	public static final Integer MIXED2EXC=1;$/;"	f	class:NodesInterconnection
MIXED2INH	src/spiking/node/NodesInterconnection.java	/^	public static final Integer MIXED2INH=2;$/;"	f	class:NodesInterconnection
MIXED2MIXED	src/spiking/node/NodesInterconnection.java	/^	public static final Integer MIXED2MIXED=0;$/;"	f	class:NodesInterconnection
MatrixTablePanel	src/org/math/plot/MatrixTablePanel.java	/^    public MatrixTablePanel(Object[][] m) {$/;"	m	class:MatrixTablePanel
MatrixTablePanel	src/org/math/plot/MatrixTablePanel.java	/^    public MatrixTablePanel(Object[][] m, String[] headers) {$/;"	m	class:MatrixTablePanel
MatrixTablePanel	src/org/math/plot/MatrixTablePanel.java	/^public class MatrixTablePanel extends DataPanel {$/;"	c
Model	src/org/math/plot/DataSelectTable.java	/^		public Model(int... selectedaxis) {$/;"	m	class:DataSelectTable.Model
Model	src/org/math/plot/DataSelectTable.java	/^	class Model implements TableModel {$/;"	c	class:DataSelectTable
NE	src/org/math/plot/plots/CloudPlot2D.java	/^    double[][] NE;$/;"	f	class:CloudPlot2D
NOISE	src/spiking/node/external_inputs/ExternalInput.java	/^	public final static int NOISE = 2;$/;"	f	class:ExternalInput
NORMALIZE_ANGLE_MAX_MEDIUM_DOUBLE	src/org/math/plot/utils/FastMath.java	/^    private static final double NORMALIZE_ANGLE_MAX_MEDIUM_DOUBLE = StrictMath.pow(2,20)*(2*Math.PI);$/;"	f	class:FastMath	file:
NORTH	src/org/math/plot/PlotPanel.java	/^    public final static String NORTH = BorderLayout.NORTH;$/;"	f	class:PlotPanel
NOTE_COLOR	src/org/math/plot/canvas/PlotCanvas.java	/^    public static Color NOTE_COLOR = Color.DARK_GRAY;$/;"	f	class:PlotCanvas
NW	src/org/math/plot/plots/CloudPlot2D.java	/^    double[][] NW;$/;"	f	class:CloudPlot2D
Ne_xn_ratio	src/spiking/node/NodesInterconnection.java	/^	private Double Ne_xn_ratio;$/;"	f	class:NodesInterconnection	file:
NeuManCfg	src/utils/configuration/NeuManCfg.java	/^	public NeuManCfg(){	$/;"	m	class:NeuManCfg
NeuManCfg	src/utils/configuration/NeuManCfg.java	/^	public NeuManCfg(Double D, Double c, Double t_arp){$/;"	m	class:NeuManCfg
NeuManCfg	src/utils/configuration/NeuManCfg.java	/^public class NeuManCfg {$/;"	c
Neuron	src/spiking/node/neuron/Neuron.java	/^public class Neuron {$/;"	c
NiceNode	src/utils/tools/NiceNode.java	/^    public NiceNode(Long fn, Double tf){$/;"	m	class:NiceNode
NiceNode	src/utils/tools/NiceNode.java	/^public class NiceNode implements Comparable<NiceNode>, Serializable{$/;"	c
NiceQueue	src/utils/tools/NiceQueue.java	/^    public NiceQueue(String tmpHashName){$/;"	m	class:NiceQueue
NiceQueue	src/utils/tools/NiceQueue.java	/^public class NiceQueue implements Serializable{$/;"	c
Node	src/connectivity/nodes/Node.java	/^	public Node(){$/;"	m	class:Node
Node	src/connectivity/nodes/Node.java	/^	public Node(ConnectivityPackageManager rm, String label, Double x, Double y, Double z){$/;"	m	class:Node
Node	src/connectivity/nodes/Node.java	/^public class Node {$/;"	c
Node	src/spiking/node/Node.java	/^	public Node($/;"	m	class:Node
Node	src/spiking/node/Node.java	/^public class Node {$/;"	c
NodeCfg	src/utils/configuration/NodeCfg.java	/^public class NodeCfg {$/;"	c
NodeLink	src/spiking/controllers/node/NodeLink.java	/^	public NodeLink (Integer srcNodeId, Integer srcNeuronId, $/;"	m	class:NodeLink
NodeLink	src/spiking/controllers/node/NodeLink.java	/^public class NodeLink implements Comparable<NodeLink>{$/;"	c
NodeNeuronsManager	src/spiking/node/neuron/NodeNeuronsManager.java	/^	public NodeNeuronsManager(Node r, Double c, $/;"	m	class:NodeNeuronsManager
NodeNeuronsManager	src/spiking/node/neuron/NodeNeuronsManager.java	/^public class NodeNeuronsManager {$/;"	c
NodeThread	src/spiking/controllers/node/NodeThread.java	/^	public NodeThread($/;"	m	class:NodeThread
NodeThread	src/spiking/controllers/node/NodeThread.java	/^public class NodeThread extends Thread{$/;"	c
NodesInterconnection	src/spiking/node/NodesInterconnection.java	/^	public NodesInterconnection($/;"	m	class:NodesInterconnection
NodesInterconnection	src/spiking/node/NodesInterconnection.java	/^	public NodesInterconnection(Integer r1, Integer r2, Double Ne_xn_ratio){$/;"	m	class:NodesInterconnection
NodesInterconnection	src/spiking/node/NodesInterconnection.java	/^public class NodesInterconnection extends IntegerCouple{$/;"	c
NodesManager	src/spiking/node/NodesManager.java	/^	public NodesManager(SpikingNeuralSimulator sim, StatisticsCollector sc){$/;"	m	class:NodesManager
NodesManager	src/spiking/node/NodesManager.java	/^public class NodesManager implements Serializable {$/;"	c
NodesManager	src/spiking/node/NodesManager.java~	/^	public NodesManager(SpikingNeuralSimulator sim, StatisticsCollector sc){$/;"	m	class:NodesManager
NodesManager	src/spiking/node/NodesManager.java~	/^public class NodesManager implements Serializable {$/;"	c
NotFoundDelimiter	src/org/math/io/parser/ArrayString.java	/^    public static String NotFoundDelimiter = "ZYXWV";$/;"	f	class:ArrayString
Noteable	src/org/math/plot/plotObjects/Noteable.java	/^public interface Noteable {$/;"	i
NumbersUtils	src/org/math/plot/utils/NumbersUtils.java	/^public strictfp final class NumbersUtils {$/;"	c
ONE_DIV_F2	src/org/math/plot/utils/FastMath.java	/^    private static final double ONE_DIV_F2 = 1\/2.0;$/;"	f	class:FastMath	file:
ONE_DIV_F3	src/org/math/plot/utils/FastMath.java	/^    private static final double ONE_DIV_F3 = 1\/6.0;$/;"	f	class:FastMath	file:
ONE_DIV_F4	src/org/math/plot/utils/FastMath.java	/^    private static final double ONE_DIV_F4 = 1\/24.0;$/;"	f	class:FastMath	file:
ONE_OVER_TWOPI_TAB	src/org/math/plot/utils/FastMath.java	/^    private static final double ONE_OVER_TWOPI_TAB[] = {$/;"	f	class:FastMath	file:
PATTERN_DOT	src/org/math/plot/render/AbstractDrawer.java	/^    public final static int PATTERN_DOT = 0;$/;"	f	class:AbstractDrawer
PI	src/org/math/plot/utils/FastMath.java	/^    public static final double PI = Math.PI;$/;"	f	class:FastMath
PIO2_HI	src/org/math/plot/utils/FastMath.java	/^    private static final double PIO2_HI = Double.longBitsToDouble(0x3FF921FB54400000L); \/\/ 1.57079632673412561417e+00 first 33 bits of pi\/2$/;"	f	class:FastMath	file:
PIO2_LO	src/org/math/plot/utils/FastMath.java	/^    private static final double PIO2_LO = Double.longBitsToDouble(0x3DD0B4611A626331L); \/\/ 6.07710050650619224932e-11 pi\/2 - PIO2_HI$/;"	f	class:FastMath	file:
PI_SUP	src/org/math/plot/utils/FastMath.java	/^    public static final double PI_SUP = Math.nextUp(Math.PI);$/;"	f	class:FastMath
PLASTICITY	src/utils/constants/Constants.java	/^	public static final Boolean PLASTICITY = false;$/;"	f	class:Constants
POISSON	src/spiking/node/external_inputs/ExternalInput.java	/^	public final static int POISSON = 0;$/;"	f	class:ExternalInput
POST_SYNAPTIC_WEIGHT_DEF_VAL	src/utils/constants/Constants.java	/^	public static final Double POST_SYNAPTIC_WEIGHT_DEF_VAL = 0.0;$/;"	f	class:Constants
PWMAX	src/utils/constants/Constants.java	/^	public static final Double PWMAX = 100.0;$/;"	f	class:Constants
PackageReader	src/connectivity/conn_package/PackageReader.java	/^	public PackageReader (ConnectivityPackageManager rm){$/;"	m	class:PackageReader
PackageReader	src/connectivity/conn_package/PackageReader.java	/^public class PackageReader {$/;"	c
PaintImage	src/org/math/plot/plotObjects/PaintImage.java	/^    public PaintImage(Paintable _source, float _alpha, double[] _xyzSW, double[] _xyzSE, double[] _xyzNW) {$/;"	m	class:PaintImage
PaintImage	src/org/math/plot/plotObjects/PaintImage.java	/^public class PaintImage implements Plotable {$/;"	c
Paintable	src/org/math/plot/plotObjects/PaintImage.java	/^    public interface Paintable {$/;"	i	class:PaintImage
ParameterRow	src/org/math/plot/DataSelectPanel.java	/^        public ParameterRow(String paramName, Object[] values) {$/;"	m	class:DataSelectPanel.ParameterRow
ParameterRow	src/org/math/plot/DataSelectPanel.java	/^    class ParameterRow extends JPanel {$/;"	c	class:DataSelectPanel
ParameterRow	src/org/math/plot/DataSelectTable.java	/^		public ParameterRow(String paramName, Object[] values) {$/;"	m	class:DataSelectTable.ParameterRow
ParameterRow	src/org/math/plot/DataSelectTable.java	/^	class ParameterRow \/*extends JPanel *\/{$/;"	c	class:DataSelectTable
ParametersPanel	src/org/math/plot/ParametersPanel.java	/^	public ParametersPanel(String[] lab) {$/;"	m	class:ParametersPanel
ParametersPanel	src/org/math/plot/ParametersPanel.java	/^	public ParametersPanel(String[] lab, String[] val) {$/;"	m	class:ParametersPanel
ParametersPanel	src/org/math/plot/ParametersPanel.java	/^	public ParametersPanel(String[] lab, String[][] ch) {$/;"	m	class:ParametersPanel
ParametersPanel	src/org/math/plot/ParametersPanel.java	/^	public ParametersPanel(String[] lab, int[] selected, String[][] ch) {$/;"	m	class:ParametersPanel
ParametersPanel	src/org/math/plot/ParametersPanel.java	/^public class ParametersPanel extends JPanel implements ActionListener {$/;"	c
Plot	src/org/math/plot/plots/Plot.java	/^    public Plot(String n, Color c) {$/;"	m	class:Plot
Plot	src/org/math/plot/plots/Plot.java	/^public abstract class Plot implements Plotable, Noteable, Editable {$/;"	c
Plot2DCanvas	src/org/math/plot/canvas/Plot2DCanvas.java	/^	public Plot2DCanvas() {$/;"	m	class:Plot2DCanvas
Plot2DCanvas	src/org/math/plot/canvas/Plot2DCanvas.java	/^	public Plot2DCanvas(Base b, BasePlot bp) {$/;"	m	class:Plot2DCanvas
Plot2DCanvas	src/org/math/plot/canvas/Plot2DCanvas.java	/^	public Plot2DCanvas(double[] min, double[] max, String[] axesScales, String[] axesLabels) {$/;"	m	class:Plot2DCanvas
Plot2DCanvas	src/org/math/plot/canvas/Plot2DCanvas.java	/^public class Plot2DCanvas extends PlotCanvas {$/;"	c
Plot2DPanel	src/org/math/plot/Plot2DPanel.java	/^    public Plot2DPanel() {$/;"	m	class:Plot2DPanel
Plot2DPanel	src/org/math/plot/Plot2DPanel.java	/^    public Plot2DPanel(PlotCanvas _canvas) {$/;"	m	class:Plot2DPanel
Plot2DPanel	src/org/math/plot/Plot2DPanel.java	/^    public Plot2DPanel(PlotCanvas _canvas, String legendOrientation) {$/;"	m	class:Plot2DPanel
Plot2DPanel	src/org/math/plot/Plot2DPanel.java	/^    public Plot2DPanel(String legendOrientation) {$/;"	m	class:Plot2DPanel
Plot2DPanel	src/org/math/plot/Plot2DPanel.java	/^    public Plot2DPanel(double[] min, double[] max, String[] axesScales, String[] axesLabels) {$/;"	m	class:Plot2DPanel
Plot2DPanel	src/org/math/plot/Plot2DPanel.java	/^public class Plot2DPanel extends PlotPanel {$/;"	c
Plot3DCanvas	src/org/math/plot/canvas/Plot3DCanvas.java	/^    public Plot3DCanvas() {$/;"	m	class:Plot3DCanvas
Plot3DCanvas	src/org/math/plot/canvas/Plot3DCanvas.java	/^    public Plot3DCanvas(Base b) {$/;"	m	class:Plot3DCanvas
Plot3DCanvas	src/org/math/plot/canvas/Plot3DCanvas.java	/^    public Plot3DCanvas(Base b, BasePlot bp) {$/;"	m	class:Plot3DCanvas
Plot3DCanvas	src/org/math/plot/canvas/Plot3DCanvas.java	/^    public Plot3DCanvas(double[] min, double[] max, String[] axesScales, String[] axesLabels) {$/;"	m	class:Plot3DCanvas
Plot3DCanvas	src/org/math/plot/canvas/Plot3DCanvas.java	/^public class Plot3DCanvas extends PlotCanvas {$/;"	c
Plot3DPanel	src/org/math/plot/Plot3DPanel.java	/^    public Plot3DPanel() {$/;"	m	class:Plot3DPanel
Plot3DPanel	src/org/math/plot/Plot3DPanel.java	/^    public Plot3DPanel(PlotCanvas _canvas) {$/;"	m	class:Plot3DPanel
Plot3DPanel	src/org/math/plot/Plot3DPanel.java	/^    public Plot3DPanel(PlotCanvas _canvas, String legendOrientation) {$/;"	m	class:Plot3DPanel
Plot3DPanel	src/org/math/plot/Plot3DPanel.java	/^    public Plot3DPanel(String legendOrientation) {$/;"	m	class:Plot3DPanel
Plot3DPanel	src/org/math/plot/Plot3DPanel.java	/^    public Plot3DPanel(double[] min, double[] max, String[] axesScales, String[] axesLabels) {$/;"	m	class:Plot3DPanel
Plot3DPanel	src/org/math/plot/Plot3DPanel.java	/^public class Plot3DPanel extends PlotPanel {$/;"	c
PlotCanvas	src/org/math/plot/canvas/PlotCanvas.java	/^    public PlotCanvas() {$/;"	m	class:PlotCanvas
PlotCanvas	src/org/math/plot/canvas/PlotCanvas.java	/^    public PlotCanvas(Base b, BasePlot bp) {$/;"	m	class:PlotCanvas
PlotCanvas	src/org/math/plot/canvas/PlotCanvas.java	/^    public PlotCanvas(double[] min, double[] max) {$/;"	m	class:PlotCanvas
PlotCanvas	src/org/math/plot/canvas/PlotCanvas.java	/^    public PlotCanvas(double[] min, double[] max, String[] axesScales, String[] axesLabels) {$/;"	m	class:PlotCanvas
PlotCanvas	src/org/math/plot/canvas/PlotCanvas.java	/^public abstract class PlotCanvas extends JPanel implements MouseListener, MouseMotionListener, ComponentListener, BaseDependant, MouseWheelListener {$/;"	c
PlotPanel	src/org/math/plot/PlotPanel.java	/^    public PlotPanel(PlotCanvas _canvas) {$/;"	m	class:PlotPanel
PlotPanel	src/org/math/plot/PlotPanel.java	/^    public PlotPanel(PlotCanvas _canvas, String legendOrientation) {$/;"	m	class:PlotPanel
PlotPanel	src/org/math/plot/PlotPanel.java	/^public abstract class PlotPanel extends JPanel {$/;"	c
PlotToolBar	src/org/math/plot/components/PlotToolBar.java	/^    public PlotToolBar(PlotPanel pp) {$/;"	m	class:PlotToolBar
PlotToolBar	src/org/math/plot/components/PlotToolBar.java	/^public class PlotToolBar extends JToolBar {$/;"	c
Plotable	src/org/math/plot/plotObjects/Plotable.java	/^public interface Plotable {$/;"	i
PrintResults	src/utils/statistics/StatisticsCollector.java	/^	public void PrintResults(){$/;"	m	class:StatisticsCollector
Projection	src/org/math/plot/render/Projection.java	/^    public Projection(AWTDrawer _draw) {$/;"	m	class:Projection
Projection	src/org/math/plot/render/Projection.java	/^public abstract class Projection {$/;"	c
Projection2D	src/org/math/plot/render/Projection2D.java	/^	public Projection2D(AWTDrawer _draw) {$/;"	m	class:Projection2D
Projection2D	src/org/math/plot/render/Projection2D.java	/^public class Projection2D extends Projection {$/;"	c
Projection3D	src/org/math/plot/render/Projection3D.java	/^    public Projection3D(AWTDrawer _draw) {$/;"	m	class:Projection3D
Projection3D	src/org/math/plot/render/Projection3D.java	/^public class Projection3D extends Projection {$/;"	c
Q	src/org/math/plot/plots/DensityLayerPlot.java	/^	double[][] Q;$/;"	f	class:DensityLayerPlot
Q	src/org/math/plot/plots/QuantileLayerPlot.java	/^	double[] Q;$/;"	f	class:QuantileLayerPlot
QuantileLayerPlot	src/org/math/plot/plots/QuantileLayerPlot.java	/^	public QuantileLayerPlot(Plot p, int a, double q, double r, boolean _symetric) {$/;"	m	class:QuantileLayerPlot
QuantileLayerPlot	src/org/math/plot/plots/QuantileLayerPlot.java	/^	public QuantileLayerPlot(Plot p, int a, double[] q, double r, boolean _symetric) {$/;"	m	class:QuantileLayerPlot
QuantileLayerPlot	src/org/math/plot/plots/QuantileLayerPlot.java	/^public class QuantileLayerPlot extends LayerPlot {$/;"	c
QuickSort	src/org/math/plot/DataSelectPanel.java	/^            private void QuickSort(double a[], int lo0, int hi0) {$/;"	m	class:DataSelectPanel.ParameterRow.Sorting	file:
R	src/spiking/node/Node.java	/^	private Double R=0.8;$/;"	f	class:Node	file:
R	src/utils/configuration/NodeCfg.java	/^	private Double R;$/;"	f	class:NodeCfg	file:
RADIUS	src/org/math/plot/plots/VectorLayerPlot.java	/^	public static int RADIUS = 5;$/;"	f	class:VectorLayerPlot
ROTATION	src/org/math/plot/canvas/Plot3DCanvas.java	/^    public final static int ROTATION = 2;$/;"	f	class:Plot3DCanvas
ROUND_DOT	src/org/math/plot/render/AbstractDrawer.java	/^    public final static int ROUND_DOT = 1;$/;"	f	class:AbstractDrawer
RasterImage	src/org/math/plot/plotObjects/RasterImage.java	/^	public RasterImage(File _source, float _alpha,double[] _xyzSW, double[] _xyzSE,double[] _xyzNW) {$/;"	m	class:RasterImage
RasterImage	src/org/math/plot/plotObjects/RasterImage.java	/^public class RasterImage implements Plotable{$/;"	c
RegionInterconnectionCfg	src/utils/configuration/RegionInterconnectionCfg.java	/^	public RegionInterconnectionCfg(){}$/;"	m	class:RegionInterconnectionCfg
RegionInterconnectionCfg	src/utils/configuration/RegionInterconnectionCfg.java	/^	public RegionInterconnectionCfg(Integer sw1, Integer sw2, Double prob){$/;"	m	class:RegionInterconnectionCfg
RegionInterconnectionCfg	src/utils/configuration/RegionInterconnectionCfg.java	/^public class RegionInterconnectionCfg {$/;"	c
SCATTER	src/org/math/plot/PlotPanel.java	/^    public final static String SCATTER = "SCATTER";$/;"	f	class:PlotPanel
SE	src/org/math/plot/plots/CloudPlot2D.java	/^    double[][] SE;$/;"	f	class:CloudPlot2D
SIN_COS_DELTA_HI	src/org/math/plot/utils/FastMath.java	/^    private static final double SIN_COS_DELTA_HI = TWOPI_HI\/(SIN_COS_TABS_SIZE-1);$/;"	f	class:FastMath	file:
SIN_COS_DELTA_LO	src/org/math/plot/utils/FastMath.java	/^    private static final double SIN_COS_DELTA_LO = TWOPI_LO\/(SIN_COS_TABS_SIZE-1);$/;"	f	class:FastMath	file:
SIN_COS_INDEXER	src/org/math/plot/utils/FastMath.java	/^    private static final double SIN_COS_INDEXER = 1\/(SIN_COS_DELTA_HI+SIN_COS_DELTA_LO);$/;"	f	class:FastMath	file:
SIN_COS_MAX_VALUE_FOR_INT_MODULO	src/org/math/plot/utils/FastMath.java	/^    private static final double SIN_COS_MAX_VALUE_FOR_INT_MODULO = ((Integer.MAX_VALUE>>9) \/ SIN_COS_INDEXER) * 0.99;$/;"	f	class:FastMath	file:
SIN_COS_TABS_SIZE	src/org/math/plot/utils/FastMath.java	/^    private static final int SIN_COS_TABS_SIZE = (1<<getTabSizePower(11)) + 1;$/;"	f	class:FastMath	file:
SOUTH	src/org/math/plot/PlotPanel.java	/^    public final static String SOUTH = BorderLayout.SOUTH;$/;"	f	class:PlotPanel
SQRT_LO_BITS	src/org/math/plot/utils/FastMath.java	/^    private static final int SQRT_LO_BITS = getTabSizePower(12);$/;"	f	class:FastMath	file:
SQRT_LO_TAB_SIZE	src/org/math/plot/utils/FastMath.java	/^    private static final int SQRT_LO_TAB_SIZE = (1<<SQRT_LO_BITS);$/;"	f	class:FastMath	file:
STAIRCASE	src/org/math/plot/PlotPanel.java	/^    public final static String STAIRCASE = "STAIRCASE";$/;"	f	class:PlotPanel
STRICT_MATH	src/org/math/plot/utils/FastMath.java	/^    private static final boolean STRICT_MATH = false;\/\/LangUtils.getBooleanProperty("jodk.fastmath.strict", true);$/;"	f	class:FastMath	file:
STRINGS	src/org/math/plot/plotObjects/Base.java	/^	public final static String STRINGS = "str";$/;"	f	class:Base
SW	src/org/math/plot/plots/CloudPlot2D.java	/^    double[][] SW;$/;"	f	class:CloudPlot2D
ScalePanel	src/org/math/plot/components/ScalesFrame.java	/^        public ScalePanel(PlotCanvas p, int i) {$/;"	m	class:ScalesFrame.ScalePanel
ScalePanel	src/org/math/plot/components/ScalesFrame.java	/^    public class ScalePanel extends JPanel implements StringPrintable {$/;"	c	class:ScalesFrame
ScalesFrame	src/org/math/plot/components/ScalesFrame.java	/^    public ScalesFrame(PlotCanvas p) {$/;"	m	class:ScalesFrame
ScalesFrame	src/org/math/plot/components/ScalesFrame.java	/^public class ScalesFrame extends JFrame implements WindowFocusListener, WindowListener {$/;"	c
ScatterPlot	src/org/math/plot/plots/ScatterPlot.java	/^    public ScatterPlot(String n, Color c, boolean[][] _pattern, double[][] _XY) {$/;"	m	class:ScatterPlot
ScatterPlot	src/org/math/plot/plots/ScatterPlot.java	/^    public ScatterPlot(String n, Color c, double[][] _XY) {$/;"	m	class:ScatterPlot
ScatterPlot	src/org/math/plot/plots/ScatterPlot.java	/^    public ScatterPlot(String n, Color c, int _type, int _radius, double[][] _XY) {$/;"	m	class:ScatterPlot
ScatterPlot	src/org/math/plot/plots/ScatterPlot.java	/^public class ScatterPlot extends Plot {$/;"	c
ScatterPlotter	src/utils/plotter/ScatterPlotter.java	/^	public ScatterPlotter(String s, double [] x, double[] y, Double simulatedTime){$/;"	m	class:ScatterPlotter
ScatterPlotter	src/utils/plotter/ScatterPlotter.java	/^	public ScatterPlotter(String s, double [] x, double[] y, Double simulatedTime, String filename){$/;"	m	class:ScatterPlotter
ScatterPlotter	src/utils/plotter/ScatterPlotter.java	/^public class ScatterPlotter {$/;"	c
Shuffler	src/utils/tools/Shuffler.java	/^public class Shuffler {$/;"	c
Sorting	src/org/math/plot/DataSelectPanel.java	/^            public Sorting(double[] array, boolean copyArray) {$/;"	m	class:DataSelectPanel.ParameterRow.Sorting
Sorting	src/org/math/plot/DataSelectPanel.java	/^        public class Sorting {$/;"	c	class:DataSelectPanel.ParameterRow
SpikingConfigManager	src/utils/configuration/SpikingConfigManager.java	/^public class SpikingConfigManager {$/;"	c
SpikingNeuralSimulator	src/spiking/simulator/SpikingNeuralSimulator.java	/^	public SpikingNeuralSimulator (){$/;"	m	class:SpikingNeuralSimulator
SpikingNeuralSimulator	src/spiking/simulator/SpikingNeuralSimulator.java	/^public class SpikingNeuralSimulator extends Thread{$/;"	c
SpikingSimulatorCfg	src/utils/configuration/SpikingSimulatorCfg.java	/^public class SpikingSimulatorCfg {$/;"	c
SpikingSynapse	src/spiking/node/SpikingSynapse.java	/^	public SpikingSynapse($/;"	m	class:SpikingSynapse
SpikingSynapse	src/spiking/node/SpikingSynapse.java	/^public class SpikingSynapse implements Serializable{$/;"	c
StaircasePlot	src/org/math/plot/plots/StaircasePlot.java	/^	public StaircasePlot(String n, Color c, boolean[][] _pattern, double[][] _XY) {$/;"	m	class:StaircasePlot
StaircasePlot	src/org/math/plot/plots/StaircasePlot.java	/^	public StaircasePlot(String n, Color c, double[][] _XY) {$/;"	m	class:StaircasePlot
StaircasePlot	src/org/math/plot/plots/StaircasePlot.java	/^	public StaircasePlot(String n, Color c, int _type, int _radius, double[][] _XY) {$/;"	m	class:StaircasePlot
StaircasePlot	src/org/math/plot/plots/StaircasePlot.java	/^public class StaircasePlot extends ScatterPlot {$/;"	c
StatisticsCollector	src/utils/statistics/StatisticsCollector.java	/^public class StatisticsCollector extends Thread {$/;"	c
StringPrintable	src/org/math/io/StringPrintable.java	/^public interface StringPrintable {$/;"	i
Synapse	src/spiking/node/Synapse.java	/^	public Synapse($/;"	m	class:Synapse
Synapse	src/spiking/node/Synapse.java	/^public class Synapse implements Comparable<Synapse>, Serializable{$/;"	c
SynapsesManager	src/spiking/node/SynapsesManager.java	/^	public SynapsesManager (Node n, Double avgNeuronalSignalSpeed){$/;"	m	class:SynapsesManager
SynapsesManager	src/spiking/node/SynapsesManager.java	/^public class SynapsesManager {$/;"	c
TAG	src/connectivity/conn_package/PackageReader.java	/^	private final static String TAG = "[Package Reader]";$/;"	f	class:PackageReader	file:
TAG	src/spiking/controllers/node/NodeThread.java	/^	private final static String TAG = "[Node Thread ";$/;"	f	class:NodeThread	file:
TAG	src/spiking/node/Node.java	/^	private final static String TAG = "[Node ";$/;"	f	class:Node	file:
TAG	src/spiking/node/NodesManager.java	/^	private final static String TAG = "[Nodes Manager] ";$/;"	f	class:NodesManager	file:
TAG	src/spiking/node/NodesManager.java~	/^	private final static String TAG = "[Nodes Manager] ";$/;"	f	class:NodesManager	file:
TAG	src/spiking/node/Synapse.java	/^	private final static String TAG = "[Syapse] ";$/;"	f	class:Synapse	file:
TAG	src/spiking/node/SynapsesManager.java	/^	private final static String TAG = "[Syapses Manager ";$/;"	f	class:SynapsesManager	file:
TAG	src/spiking/node/external_inputs/ExternalInput.java	/^	private final static String TAG = "[External Input] ";$/;"	f	class:ExternalInput	file:
TAG	src/spiking/node/neuron/NodeNeuronsManager.java	/^	private final static String TAG = "[Neurons Manager for Node: ";$/;"	f	class:NodeNeuronsManager	file:
TAG	src/spiking/simulator/SpikingNeuralSimulator.java	/^	private final static String TAG = "[Spiking Neural Simulator] ";$/;"	f	class:SpikingNeuralSimulator	file:
TAG	src/utils/statistics/StatisticsCollector.java	/^	private final String TAG = "[Statistic Collector] ";$/;"	f	class:StatisticsCollector	file:
TAN_DELTA_HI	src/org/math/plot/utils/FastMath.java	/^    private static final double TAN_DELTA_HI = PIO2_HI\/(TAN_VIRTUAL_TABS_SIZE-1);$/;"	f	class:FastMath	file:
TAN_DELTA_LO	src/org/math/plot/utils/FastMath.java	/^    private static final double TAN_DELTA_LO = PIO2_LO\/(TAN_VIRTUAL_TABS_SIZE-1);$/;"	f	class:FastMath	file:
TAN_INDEXER	src/org/math/plot/utils/FastMath.java	/^    private static final double TAN_INDEXER = 1\/(TAN_DELTA_HI+TAN_DELTA_LO);$/;"	f	class:FastMath	file:
TAN_MAX_VALUE_FOR_INT_MODULO	src/org/math/plot/utils/FastMath.java	/^    private static final double TAN_MAX_VALUE_FOR_INT_MODULO = (((Integer.MAX_VALUE>>9) \/ TAN_INDEXER) * 0.99);$/;"	f	class:FastMath	file:
TAN_MAX_VALUE_FOR_TABS	src/org/math/plot/utils/FastMath.java	/^    private static final double TAN_MAX_VALUE_FOR_TABS = Math.toRadians(77.0);$/;"	f	class:FastMath	file:
TAN_TABS_SIZE	src/org/math/plot/utils/FastMath.java	/^    private static final int TAN_TABS_SIZE = (int)((TAN_MAX_VALUE_FOR_TABS\/(Math.PI\/2)) * (TAN_VIRTUAL_TABS_SIZE-1)) + 1;$/;"	f	class:FastMath	file:
TAN_VIRTUAL_TABS_SIZE	src/org/math/plot/utils/FastMath.java	/^    private static final int TAN_VIRTUAL_TABS_SIZE = (1<<getTabSizePower(12)) + 1;$/;"	f	class:FastMath	file:
TAUM	src/utils/constants/Constants.java	/^	public static final Double TAUM = 30.0;$/;"	f	class:Constants
TAUP	src/utils/constants/Constants.java	/^	public static final Double TAUP = 15.0;$/;"	f	class:Constants
TIME_TO_FIRE_DEF_VAL	src/utils/constants/Constants.java	/^	public static final Double TIME_TO_FIRE_DEF_VAL=-1.0;\/\/Double.MAX_VALUE;$/;"	f	class:Constants
TO	src/utils/constants/Constants.java	/^	public static final Double TO = 3.0;$/;"	f	class:Constants
TRACT_LENGTHS_FILE_NAME	src/connectivity/conn_package/PackageReader.java	/^	private static final String TRACT_LENGTHS_FILE_NAME="mu_lambda.txt";$/;"	f	class:PackageReader	file:
TRACT_LENGTHS_SHAPE_PARAMETERS_FILE_NAME	src/connectivity/conn_package/PackageReader.java	/^	private static final String TRACT_LENGTHS_SHAPE_PARAMETERS_FILE_NAME="alpha_lambda.txt";$/;"	f	class:PackageReader	file:
TRANSLATION	src/org/math/plot/canvas/PlotCanvas.java	/^    public final static int TRANSLATION = 1;$/;"	f	class:PlotCanvas
TWOPI_HI	src/org/math/plot/utils/FastMath.java	/^    private static final double TWOPI_HI = 4*PIO2_HI;$/;"	f	class:FastMath	file:
TWOPI_LO	src/org/math/plot/utils/FastMath.java	/^    private static final double TWOPI_LO = 4*PIO2_LO;$/;"	f	class:FastMath	file:
TWOPI_TAB0	src/org/math/plot/utils/FastMath.java	/^    private static final double TWOPI_TAB0 = Double.longBitsToDouble(0x401921FB40000000L);$/;"	f	class:FastMath	file:
TWOPI_TAB1	src/org/math/plot/utils/FastMath.java	/^    private static final double TWOPI_TAB1 = Double.longBitsToDouble(0x3E94442D00000000L);$/;"	f	class:FastMath	file:
TWOPI_TAB2	src/org/math/plot/utils/FastMath.java	/^    private static final double TWOPI_TAB2 = Double.longBitsToDouble(0x3D18469880000000L);$/;"	f	class:FastMath	file:
TWOPI_TAB3	src/org/math/plot/utils/FastMath.java	/^    private static final double TWOPI_TAB3 = Double.longBitsToDouble(0x3B98CC5160000000L);$/;"	f	class:FastMath	file:
TWOPI_TAB4	src/org/math/plot/utils/FastMath.java	/^    private static final double TWOPI_TAB4 = Double.longBitsToDouble(0x3A101B8380000000L);$/;"	f	class:FastMath	file:
TWO_MATH_PI_IN_MINUS_PI_PI	src/org/math/plot/utils/FastMath.java	/^    private static final double TWO_MATH_PI_IN_MINUS_PI_PI = -2.449293598153844E-16;$/;"	f	class:FastMath	file:
TWO_POW_24	src/org/math/plot/utils/FastMath.java	/^    private static final double TWO_POW_24 = Double.longBitsToDouble(0x4170000000000000L);$/;"	f	class:FastMath	file:
TWO_POW_26	src/org/math/plot/utils/FastMath.java	/^    private static final double TWO_POW_26 = Double.longBitsToDouble(0x4190000000000000L);$/;"	f	class:FastMath	file:
TWO_POW_27	src/org/math/plot/utils/FastMath.java	/^    private static final double TWO_POW_27 = Double.longBitsToDouble(0x41A0000000000000L);$/;"	f	class:FastMath	file:
TWO_POW_450	src/org/math/plot/utils/FastMath.java	/^    private static final double TWO_POW_450 = Double.longBitsToDouble(0x5C10000000000000L);$/;"	f	class:FastMath	file:
TWO_POW_52	src/org/math/plot/utils/FastMath.java	/^    private static final double TWO_POW_52 = Double.longBitsToDouble(0x4330000000000000L);$/;"	f	class:FastMath	file:
TWO_POW_66	src/org/math/plot/utils/FastMath.java	/^    private static final double TWO_POW_66 = Double.longBitsToDouble(0x4410000000000000L);$/;"	f	class:FastMath	file:
TWO_POW_750	src/org/math/plot/utils/FastMath.java	/^    private static final double TWO_POW_750 = Double.longBitsToDouble(0x6ED0000000000000L);$/;"	f	class:FastMath	file:
TWO_POW_N24	src/org/math/plot/utils/FastMath.java	/^    private static final double TWO_POW_N24 = Double.longBitsToDouble(0x3E70000000000000L);$/;"	f	class:FastMath	file:
TWO_POW_N26	src/org/math/plot/utils/FastMath.java	/^    private static final double TWO_POW_N26 = Double.longBitsToDouble(0x3E50000000000000L);$/;"	f	class:FastMath	file:
TWO_POW_N27	src/org/math/plot/utils/FastMath.java	/^    private static final double TWO_POW_N27 = Double.longBitsToDouble(0x3E40000000000000L);$/;"	f	class:FastMath	file:
TWO_POW_N28	src/org/math/plot/utils/FastMath.java	/^    private static final double TWO_POW_N28 = Double.longBitsToDouble(0x3E30000000000000L);$/;"	f	class:FastMath	file:
TWO_POW_N450	src/org/math/plot/utils/FastMath.java	/^    private static final double TWO_POW_N450 = Double.longBitsToDouble(0x23D0000000000000L);$/;"	f	class:FastMath	file:
TWO_POW_N54	src/org/math/plot/utils/FastMath.java	/^    private static final double TWO_POW_N54 = Double.longBitsToDouble(0x3C90000000000000L);$/;"	f	class:FastMath	file:
TWO_POW_N55	src/org/math/plot/utils/FastMath.java	/^    private static final double TWO_POW_N55 = Double.longBitsToDouble(0x3C80000000000000L);$/;"	f	class:FastMath	file:
TWO_POW_N750	src/org/math/plot/utils/FastMath.java	/^    private static final double TWO_POW_N750 = Double.longBitsToDouble(0x1110000000000000L);$/;"	f	class:FastMath	file:
USE_JDK_MATH	src/org/math/plot/utils/FastMath.java	/^    private static final boolean USE_JDK_MATH = false;\/\/LangUtils.getBooleanProperty("jodk.fastmath.usejdk", false);$/;"	f	class:FastMath	file:
USE_POWTABS_FOR_ASIN	src/org/math/plot/utils/FastMath.java	/^    private static final boolean USE_POWTABS_FOR_ASIN = true;$/;"	f	class:FastMath	file:
USE_REDEFINED_LOG	src/org/math/plot/utils/FastMath.java	/^    private static final boolean USE_REDEFINED_LOG = true;\/\/LangUtils.getBooleanProperty("jodk.fastmath.fastlog", true);$/;"	f	class:FastMath	file:
USE_REDEFINED_SQRT	src/org/math/plot/utils/FastMath.java	/^    private static final boolean USE_REDEFINED_SQRT = true;\/\/LangUtils.getBooleanProperty("jodk.fastmath.fastsqrt", false);$/;"	f	class:FastMath	file:
V	src/org/math/plot/icons/center.png	/^xJ,XZ%601D8jP_Ѹ)V,ضvp[ڶҖmlXAJ;BHf}3UeoobuONrRYТEv/;"	
V	src/org/math/plot/plots/VectorLayerPlot.java	/^	double[][] V;$/;"	f	class:VectorLayerPlot
VERTICAL	src/org/math/plot/components/LegendPanel.java	/^    public static int VERTICAL = 0;$/;"	f	class:LegendPanel
VectorLayerPlot	src/org/math/plot/plots/VectorLayerPlot.java	/^	public VectorLayerPlot(Plot p, double[][] v) {$/;"	m	class:VectorLayerPlot
VectorLayerPlot	src/org/math/plot/plots/VectorLayerPlot.java	/^public class VectorLayerPlot extends LayerPlot {$/;"	c
WEIGHTS_FILE_NAME	src/connectivity/conn_package/PackageReader.java	/^	private static final String WEIGHTS_FILE_NAME="Ne_xn_ratio.txt";$/;"	f	class:PackageReader	file:
WEST	src/org/math/plot/PlotPanel.java	/^    public final static String WEST = BorderLayout.WEST;$/;"	f	class:PlotPanel
WIDHT	src/org/math/plot/plots/GaussianDensityLayerPlot.java	/^	public static int WIDHT = 2;$/;"	f	class:GaussianDensityLayerPlot
WIDTH	src/org/math/plot/plots/DensityLayerPlot.java	/^	public static int WIDTH = 2;$/;"	f	class:DensityLayerPlot
WIDTH	src/org/math/plot/plots/QuantileLayerPlot.java	/^	public static int WIDTH = 2;$/;"	f	class:QuantileLayerPlot
X	src/org/math/plot/plots/GridPlot3D.java	/^    double[] X;$/;"	f	class:GridPlot3D
XY	src/org/math/plot/components/DatasFrame.java	/^		MatrixTablePanel XY;$/;"	f	class:DatasFrame.DataPanel
XY	src/org/math/plot/plots/BoxPlot2D.java	/^    double[][] XY;$/;"	f	class:BoxPlot2D
XY	src/org/math/plot/plots/BoxPlot3D.java	/^    double[][] XY;$/;"	f	class:BoxPlot3D
XY	src/org/math/plot/plots/CloudPlot2D.java	/^    double[][] XY;$/;"	f	class:CloudPlot2D
XY	src/org/math/plot/plots/CloudPlot3D.java	/^    double[][] XY;$/;"	f	class:CloudPlot3D
XY	src/org/math/plot/plots/HistogramPlot2D.java	/^    double[][] XY;$/;"	f	class:HistogramPlot2D
XY	src/org/math/plot/plots/HistogramPlot3D.java	/^    double[][] XY;$/;"	f	class:HistogramPlot3D
XY	src/org/math/plot/plots/Plot.java	/^        MatrixTablePanel XY;$/;"	f	class:Plot.DefaultDataPanel
XY	src/org/math/plot/plots/ScatterPlot.java	/^    double[][] XY;$/;"	f	class:ScatterPlot
XYZ_list	src/org/math/plot/plots/GridPlot3D.java	/^    private double[][] XYZ_list;$/;"	f	class:GridPlot3D	file:
Xmax	src/org/math/plot/plots/BoxPlot2D.java	/^    double[] Xmax;$/;"	f	class:BoxPlot2D
Xmax	src/org/math/plot/plots/BoxPlot3D.java	/^    double[] Xmax;$/;"	f	class:BoxPlot3D
Xmin	src/org/math/plot/plots/BoxPlot2D.java	/^    double[] Xmin;$/;"	f	class:BoxPlot2D
Xmin	src/org/math/plot/plots/BoxPlot3D.java	/^    double[] Xmin;$/;"	f	class:BoxPlot3D
Y	src/org/math/plot/plots/GridPlot3D.java	/^    double[] Y;$/;"	f	class:GridPlot3D
Ymax	src/org/math/plot/plots/BoxPlot2D.java	/^    double[] Ymax;$/;"	f	class:BoxPlot2D
Ymax	src/org/math/plot/plots/BoxPlot3D.java	/^    double[] Ymax;$/;"	f	class:BoxPlot3D
Ymin	src/org/math/plot/plots/BoxPlot2D.java	/^    double[] Ymin;$/;"	f	class:BoxPlot2D
Ymin	src/org/math/plot/plots/BoxPlot3D.java	/^    double[] Ymin;$/;"	f	class:BoxPlot3D
Z	src/org/math/plot/plots/GridPlot3D.java	/^    double[][] Z;$/;"	f	class:GridPlot3D
ZOOM	src/org/math/plot/canvas/PlotCanvas.java	/^    public final static int ZOOM = 0;$/;"	f	class:PlotCanvas
Zmax	src/org/math/plot/plots/BoxPlot3D.java	/^    double[] Zmax;$/;"	f	class:BoxPlot3D
Zmin	src/org/math/plot/plots/BoxPlot3D.java	/^    double[] Zmin;$/;"	f	class:BoxPlot3D
__addInterRegionConnection	src/spiking/node/NodesManager.java	/^	private void __addInterRegionConnection($/;"	m	class:NodesManager	file:
__addInterRegionConnection	src/spiking/node/NodesManager.java~	/^	private void __addInterRegionConnection($/;"	m	class:NodesManager	file:
_addInterRegionConnection	src/spiking/node/NodesManager.java	/^	private void _addInterRegionConnection($/;"	m	class:NodesManager	file:
_addInterRegionConnection	src/spiking/node/NodesManager.java~	/^	private void _addInterRegionConnection($/;"	m	class:NodesManager	file:
_addNode	src/connectivity/nodes/ConnectivityPackageManager.java	/^	private void _addNode(Node r){$/;"	m	class:ConnectivityPackageManager	file:
_data	src/org/math/plot/DataSelectPanel.java	/^    private Object[][] _data, _selecteddata;$/;"	f	class:DataSelectPanel	file:
_data	src/org/math/plot/DataSelectTable.java	/^	private Object[][] _data, _selecteddata;$/;"	f	class:DataSelectTable	file:
_dimension	src/org/math/plot/DataSelectPanel.java	/^    int _dimension;$/;"	f	class:DataSelectPanel
_dimension	src/org/math/plot/DataSelectTable.java	/^	int _dimension;$/;"	f	class:DataSelectTable
_externalSource	src/spiking/node/SpikingSynapse.java	/^	public Boolean _externalSource(){$/;"	m	class:SpikingSynapse
_getFromExternalSource	src/spiking/node/SpikingSynapse.java	/^	public Boolean _getFromExternalSource() {$/;"	m	class:SpikingSynapse
_getInterworldConnectionProb	src/spiking/node/NodesManager.java	/^	public NodesInterconnection _getInterworldConnectionProb(Node reg1, Node reg2){$/;"	m	class:NodesManager
_getInterworldConnectionProb	src/spiking/node/NodesManager.java~	/^	public NodesInterconnection _getInterworldConnectionProb(Node reg1, Node reg2){$/;"	m	class:NodesManager
_isNumber	src/org/math/plot/DataSelectPanel.java	/^        boolean _isNumber;$/;"	f	class:DataSelectPanel.ParameterRow
_isNumber	src/org/math/plot/DataSelectTable.java	/^		boolean _isNumber;$/;"	f	class:DataSelectTable.ParameterRow
_kernelDoubleValues	src/org/math/plot/DataSelectPanel.java	/^        double[] _kernelDoubleValues;$/;"	f	class:DataSelectPanel.ParameterRow
_kernelDoubleValues	src/org/math/plot/DataSelectTable.java	/^		double[] _kernelDoubleValues;$/;"	f	class:DataSelectTable.ParameterRow
_kernelStringValues	src/org/math/plot/DataSelectPanel.java	/^        Vector<Object> _kernelStringValues;$/;"	f	class:DataSelectPanel.ParameterRow
_kernelStringValues	src/org/math/plot/DataSelectTable.java	/^		Vector<Object> _kernelStringValues;$/;"	f	class:DataSelectTable.ParameterRow
_nbselected	src/org/math/plot/DataSelectPanel.java	/^    private int _nbselected;$/;"	f	class:DataSelectPanel	file:
_nbselected	src/org/math/plot/DataSelectTable.java	/^	private int _nbselected;$/;"	f	class:DataSelectTable	file:
_paramName	src/org/math/plot/DataSelectPanel.java	/^        String _paramName;$/;"	f	class:DataSelectPanel.ParameterRow
_paramName	src/org/math/plot/DataSelectTable.java	/^		String _paramName;$/;"	f	class:DataSelectTable.ParameterRow
_parametersNames	src/org/math/plot/DataSelectPanel.java	/^    private String[] _parametersNames;$/;"	f	class:DataSelectPanel	file:
_parametersNames	src/org/math/plot/DataSelectTable.java	/^	private String[] _parametersNames;$/;"	f	class:DataSelectTable	file:
_selecteddata	src/org/math/plot/DataSelectPanel.java	/^    private Object[][] _data, _selecteddata;$/;"	f	class:DataSelectPanel	file:
_selecteddata	src/org/math/plot/DataSelectTable.java	/^	private Object[][] _data, _selecteddata;$/;"	f	class:DataSelectTable	file:
_selectedindex	src/org/math/plot/DataSelectPanel.java	/^    private int[] _selectedindex;$/;"	f	class:DataSelectPanel	file:
_selectedindex	src/org/math/plot/DataSelectTable.java	/^	private int[] _selectedindex;$/;"	f	class:DataSelectTable	file:
_table	src/org/math/plot/DataSelectTable.java	/^	private JTable _table;$/;"	f	class:DataSelectTable	file:
_tmpselectedIndex	src/org/math/plot/DataSelectPanel.java	/^    private int[] _tmpselectedIndex;$/;"	f	class:DataSelectPanel	file:
_tmpselectedIndex	src/org/math/plot/DataSelectTable.java	/^	private int[] _tmpselectedIndex;$/;"	f	class:DataSelectTable	file:
_tmpselecteddata	src/org/math/plot/DataSelectPanel.java	/^    private LinkedList<Object[]> _tmpselecteddata;$/;"	f	class:DataSelectPanel	file:
_tmpselecteddata	src/org/math/plot/DataSelectTable.java	/^	private LinkedList<Object[]> _tmpselecteddata;$/;"	f	class:DataSelectTable	file:
_update	src/utils/tools/NiceQueue.java	/^	public void _update(double x){$/;"	m	class:NiceQueue
a	src/utils/tools/IntegerCouple.java	/^	private Integer a;$/;"	f	class:IntegerCouple	file:
a	src/utils/tools/LongCouple.java	/^	private Long a;$/;"	f	class:LongCouple	file:
abs	src/org/math/plot/utils/FastMath.java	/^    public static double abs(double a) {$/;"	m	class:FastMath
abs	src/org/math/plot/utils/FastMath.java	/^    public static float abs(float a) {$/;"	m	class:FastMath
abs	src/org/math/plot/utils/FastMath.java	/^    public static int abs(int value) {$/;"	m	class:FastMath
abs	src/org/math/plot/utils/FastMath.java	/^    public static long abs(long a) {$/;"	m	class:FastMath
abs	src/org/math/plot/utils/NumbersUtils.java	/^    public static int abs(int a) {$/;"	m	class:NumbersUtils
abs	src/org/math/plot/utils/NumbersUtils.java	/^    public static long abs(long a) {$/;"	m	class:NumbersUtils
acos	src/org/math/plot/utils/FastMath.java	/^    public static double acos(double value) {$/;"	m	class:FastMath
acosInRange	src/org/math/plot/utils/FastMath.java	/^    public static double acosInRange(double value) {$/;"	m	class:FastMath
action	src/org/math/plot/ParametersPanel.java	/^	private Runnable action;$/;"	f	class:ParametersPanel	file:
actionPerformed	src/org/math/plot/ParametersPanel.java	/^	public void actionPerformed(ActionEvent e) {$/;"	m	class:ParametersPanel
active	src/utils/statistics/StatisticsCollector.java	/^	private volatile Long active=0l;$/;"	f	class:StatisticsCollector	file:
active2passive	src/utils/statistics/StatisticsCollector.java	/^	private volatile Long active2passive=0l;$/;"	f	class:StatisticsCollector	file:
activeNeurons	src/spiking/node/neuron/NodeNeuronsManager.java	/^	private NiceQueue activeNeurons;\/\/ = new NiceQueue();	$/;"	f	class:NodeNeuronsManager	file:
activePassiveDebug	src/spiking/controllers/node/NodeThread.java	/^	private Boolean activePassiveDebug = false;$/;"	f	class:NodeThread	file:
addActiveNeuron	src/spiking/node/neuron/NodeNeuronsManager.java	/^	public void addActiveNeuron(Long neuronId, Double fireTime, Double currentTime, Integer debug){$/;"	m	class:NodeNeuronsManager
addAfferent	src/spiking/node/plasticity/AfferentManager.java	/^	public void addAfferent(Afferent aff){$/;"	m	class:AfferentManager
addAmplitude	src/connectivity/nodes/ConnectivityPackageManager.java	/^	public void addAmplitude(Integer src, Integer dst, Double amplitude){$/;"	m	class:ConnectivityPackageManager
addAmplitudeStdDeviation	src/connectivity/nodes/ConnectivityPackageManager.java	/^	public void addAmplitudeStdDeviation(Integer src, Integer dst, Double amplitude){$/;"	m	class:ConnectivityPackageManager
addBarPlot	src/org/math/plot/Plot2DPanel.java	/^    public int addBarPlot(String name, Color color, double[] X, double[] Y) {$/;"	m	class:Plot2DPanel
addBarPlot	src/org/math/plot/Plot2DPanel.java	/^    public int addBarPlot(String name, Color color, double[] Y) {$/;"	m	class:Plot2DPanel
addBarPlot	src/org/math/plot/Plot2DPanel.java	/^    public int addBarPlot(String name, Color color, double[][] XY) {$/;"	m	class:Plot2DPanel
addBarPlot	src/org/math/plot/Plot2DPanel.java	/^    public int addBarPlot(String name, double[] X, double[] Y) {$/;"	m	class:Plot2DPanel
addBarPlot	src/org/math/plot/Plot2DPanel.java	/^    public int addBarPlot(String name, double[] Y) {$/;"	m	class:Plot2DPanel
addBarPlot	src/org/math/plot/Plot2DPanel.java	/^    public int addBarPlot(String name, double[][] XY) {$/;"	m	class:Plot2DPanel
addBarPlot	src/org/math/plot/Plot3DPanel.java	/^    public int addBarPlot(String name, Color color, double[] X, double[] Y, double[] Z) {$/;"	m	class:Plot3DPanel
addBarPlot	src/org/math/plot/Plot3DPanel.java	/^    public int addBarPlot(String name, Color color, double[][] XY) {$/;"	m	class:Plot3DPanel
addBarPlot	src/org/math/plot/Plot3DPanel.java	/^    public int addBarPlot(String name, double[] X, double[] Y, double[] Z) {$/;"	m	class:Plot3DPanel
addBarPlot	src/org/math/plot/Plot3DPanel.java	/^    public int addBarPlot(String name, double[][] XY) {$/;"	m	class:Plot3DPanel
addBarPlot	src/org/math/plot/canvas/Plot2DCanvas.java	/^	public int addBarPlot(String name, Color c, double[] X, double[] Y) {$/;"	m	class:Plot2DCanvas
addBarPlot	src/org/math/plot/canvas/Plot2DCanvas.java	/^	public int addBarPlot(String name, Color c, double[] Y) {$/;"	m	class:Plot2DCanvas
addBarPlot	src/org/math/plot/canvas/Plot2DCanvas.java	/^	public int addBarPlot(String name, Color c, double[][] XY) {$/;"	m	class:Plot2DCanvas
addBarPlot	src/org/math/plot/canvas/Plot3DCanvas.java	/^    public int addBarPlot(String name, Color c, double[] X, double[] Y, double[] Z) {$/;"	m	class:Plot3DCanvas
addBarPlot	src/org/math/plot/canvas/Plot3DCanvas.java	/^    public int addBarPlot(String name, Color c, double[][] XYZ) {$/;"	m	class:Plot3DCanvas
addBaseLabel	src/org/math/plot/PlotPanel.java	/^    public void addBaseLabel(String text, Color c, double... where) {$/;"	m	class:PlotPanel
addBaseLabel	src/org/math/plot/canvas/PlotCanvas.java	/^    public void addBaseLabel(String text, Color c, double... where) {$/;"	m	class:PlotCanvas
addBounded	src/org/math/plot/utils/FastMath.java	/^    public static int addBounded(int a, int b) {$/;"	m	class:FastMath
addBounded	src/org/math/plot/utils/FastMath.java	/^    public static long addBounded(long a, long b) {$/;"	m	class:FastMath
addBoxPlot	src/org/math/plot/Plot2DPanel.java	/^    public int addBoxPlot(String name, Color color, double[][] XY, double[][] dXdY) {$/;"	m	class:Plot2DPanel
addBoxPlot	src/org/math/plot/Plot2DPanel.java	/^    public int addBoxPlot(String name, Color color, double[][] XYdXdY) {$/;"	m	class:Plot2DPanel
addBoxPlot	src/org/math/plot/Plot2DPanel.java	/^    public int addBoxPlot(String name, double[][] XY, double[][] dXdY) {$/;"	m	class:Plot2DPanel
addBoxPlot	src/org/math/plot/Plot2DPanel.java	/^    public int addBoxPlot(String name, double[][] XYdXdY) {$/;"	m	class:Plot2DPanel
addBoxPlot	src/org/math/plot/Plot3DPanel.java	/^    public int addBoxPlot(String name, Color c, double[][] XY, double[][] dX) {$/;"	m	class:Plot3DPanel
addBoxPlot	src/org/math/plot/Plot3DPanel.java	/^    public int addBoxPlot(String name, Color c, double[][] XYdX) {$/;"	m	class:Plot3DPanel
addBoxPlot	src/org/math/plot/Plot3DPanel.java	/^    public int addBoxPlot(String name, double[][] XY, double[][] dX) {$/;"	m	class:Plot3DPanel
addBoxPlot	src/org/math/plot/Plot3DPanel.java	/^    public int addBoxPlot(String name, double[][] XYdX) {$/;"	m	class:Plot3DPanel
addBoxPlot	src/org/math/plot/canvas/Plot2DCanvas.java	/^	public int addBoxPlot(String name, Color c, double[][] XY, double[][] dX) {$/;"	m	class:Plot2DCanvas
addBoxPlot	src/org/math/plot/canvas/Plot2DCanvas.java	/^	public int addBoxPlot(String name, Color c, double[][] XYdX) {$/;"	m	class:Plot2DCanvas
addBoxPlot	src/org/math/plot/canvas/Plot3DCanvas.java	/^    public int addBoxPlot(String name, Color c, double[][] XY, double[][] dX) {$/;"	m	class:Plot3DCanvas
addBoxPlot	src/org/math/plot/canvas/Plot3DCanvas.java	/^    public int addBoxPlot(String name, Color c, double[][] XYdX) {$/;"	m	class:Plot3DCanvas
addCloudPlot	src/org/math/plot/Plot2DPanel.java	/^    public int addCloudPlot(String name, Color color, double[][] sampleXY, int nX, int nY) {$/;"	m	class:Plot2DPanel
addCloudPlot	src/org/math/plot/Plot2DPanel.java	/^    public int addCloudPlot(String name, double[][] sampleXY, int nX, int nY) {$/;"	m	class:Plot2DPanel
addCloudPlot	src/org/math/plot/Plot3DPanel.java	/^    public int addCloudPlot(String name, Color color, double[][] sampleXYZ, int nX, int nY, int nZ) {$/;"	m	class:Plot3DPanel
addCloudPlot	src/org/math/plot/Plot3DPanel.java	/^    public int addCloudPlot(String name, double[][] sampleXYZ, int nX, int nY, int nZ) {$/;"	m	class:Plot3DPanel
addCloudPlot	src/org/math/plot/canvas/Plot2DCanvas.java	/^	public int addCloudPlot(String name, Color c, double[][] sampleXY, int nX, int nY) {$/;"	m	class:Plot2DCanvas
addCloudPlot	src/org/math/plot/canvas/Plot3DCanvas.java	/^    public int addCloudPlot(String name, Color c, double[][] sampleXYZ, int nX, int nY, int nZ) {$/;"	m	class:Plot3DCanvas
addComponents	src/org/math/plot/components/ScalesFrame.java	/^        private void addComponents() {$/;"	m	class:ScalesFrame.ScalePanel	file:
addEdge	src/connectivity/nodes/ConnectivityPackageManager.java	/^	public void addEdge(Integer src, Integer dst, Double weight){$/;"	m	class:ConnectivityPackageManager
addExact	src/org/math/plot/utils/FastMath.java	/^    public static int addExact(int a, int b) {$/;"	m	class:FastMath
addExact	src/org/math/plot/utils/FastMath.java	/^    public static long addExact(long a, long b) {$/;"	m	class:FastMath
addGaussQuantiles	src/org/math/plot/plots/Plot.java	/^    public void addGaussQuantiles(int a, double s) {$/;"	m	class:Plot
addGaussQuantiles	src/org/math/plot/plots/Plot.java	/^    public void addGaussQuantiles(int a, double[] s) {$/;"	m	class:Plot
addGaussQuantilestoPlot	src/org/math/plot/PlotPanel.java	/^    public void addGaussQuantilestoPlot(int numPlot, int numAxe, double s) {$/;"	m	class:PlotPanel
addGaussQuantilestoPlot	src/org/math/plot/PlotPanel.java	/^    public void addGaussQuantilestoPlot(int numPlot, int numAxe, double[] s) {$/;"	m	class:PlotPanel
addGaussQuantilestoPlot	src/org/math/plot/canvas/PlotCanvas.java	/^    public void addGaussQuantilestoPlot(int numPlot, int numAxe, double s) {$/;"	m	class:PlotCanvas
addGaussQuantilestoPlot	src/org/math/plot/canvas/PlotCanvas.java	/^    public void addGaussQuantilestoPlot(int numPlot, int numAxe, double[] s) {$/;"	m	class:PlotCanvas
addGridPlot	src/org/math/plot/Plot3DPanel.java	/^    public int addGridPlot(String name, Color c, double[] X, double[] Y, double[][] Z) {$/;"	m	class:Plot3DPanel
addGridPlot	src/org/math/plot/Plot3DPanel.java	/^    public int addGridPlot(String name, Color c, double[][] XYZMatrix) {$/;"	m	class:Plot3DPanel
addGridPlot	src/org/math/plot/Plot3DPanel.java	/^    public int addGridPlot(String name, double[] X, double[] Y, double[][] Z) {$/;"	m	class:Plot3DPanel
addGridPlot	src/org/math/plot/Plot3DPanel.java	/^    public int addGridPlot(String name, double[][] XYZMatrix) {$/;"	m	class:Plot3DPanel
addGridPlot	src/org/math/plot/canvas/Plot3DCanvas.java	/^    public int addGridPlot(String name, Color c, double[] X, double[] Y, double[][] Z) {$/;"	m	class:Plot3DCanvas
addGridPlot	src/org/math/plot/canvas/Plot3DCanvas.java	/^    public int addGridPlot(String name, Color c, double[][] XYZMatrix) {$/;"	m	class:Plot3DCanvas
addHistogramPlot	src/org/math/plot/Plot2DPanel.java	/^    public int addHistogramPlot(String name, Color color, double[] X, double min, double max, int n) {$/;"	m	class:Plot2DPanel
addHistogramPlot	src/org/math/plot/Plot2DPanel.java	/^    public int addHistogramPlot(String name, Color color, double[] sample, double... bounds) {$/;"	m	class:Plot2DPanel
addHistogramPlot	src/org/math/plot/Plot2DPanel.java	/^    public int addHistogramPlot(String name, Color color, double[] sample, int n) {$/;"	m	class:Plot2DPanel
addHistogramPlot	src/org/math/plot/Plot2DPanel.java	/^    public int addHistogramPlot(String name, Color color, double[][] XY, double[] dX) {$/;"	m	class:Plot2DPanel
addHistogramPlot	src/org/math/plot/Plot2DPanel.java	/^    public int addHistogramPlot(String name, Color color, double[][] XYdX) {$/;"	m	class:Plot2DPanel
addHistogramPlot	src/org/math/plot/Plot2DPanel.java	/^    public int addHistogramPlot(String name, double[] X, double min, double max, int n) {$/;"	m	class:Plot2DPanel
addHistogramPlot	src/org/math/plot/Plot2DPanel.java	/^    public int addHistogramPlot(String name, double[] X, double... bounds) {$/;"	m	class:Plot2DPanel
addHistogramPlot	src/org/math/plot/Plot2DPanel.java	/^    public int addHistogramPlot(String name, double[] X, int n) {$/;"	m	class:Plot2DPanel
addHistogramPlot	src/org/math/plot/Plot2DPanel.java	/^    public int addHistogramPlot(String name, double[][] XY, double[] dX) {$/;"	m	class:Plot2DPanel
addHistogramPlot	src/org/math/plot/Plot2DPanel.java	/^    public int addHistogramPlot(String name, double[][] XYdX) {$/;"	m	class:Plot2DPanel
addHistogramPlot	src/org/math/plot/Plot3DPanel.java	/^    public int addHistogramPlot(String name, Color c, double[][] XY, double minX, double maxX, int nX, double minY, double maxY, int nY) {$/;"	m	class:Plot3DPanel
addHistogramPlot	src/org/math/plot/Plot3DPanel.java	/^    public int addHistogramPlot(String name, Color c, double[][] XY, double[] boundsX, double[] boundsY) {$/;"	m	class:Plot3DPanel
addHistogramPlot	src/org/math/plot/Plot3DPanel.java	/^    public int addHistogramPlot(String name, Color c, double[][] XY, double[][] dX) {$/;"	m	class:Plot3DPanel
addHistogramPlot	src/org/math/plot/Plot3DPanel.java	/^    public int addHistogramPlot(String name, Color c, double[][] XY, int nX, int nY) {$/;"	m	class:Plot3DPanel
addHistogramPlot	src/org/math/plot/Plot3DPanel.java	/^    public int addHistogramPlot(String name, Color c, double[][] XYdX) {$/;"	m	class:Plot3DPanel
addHistogramPlot	src/org/math/plot/Plot3DPanel.java	/^    public int addHistogramPlot(String name, double[][] XY, double minX, double maxX, int nX, double minY, double maxY, int nY) {$/;"	m	class:Plot3DPanel
addHistogramPlot	src/org/math/plot/Plot3DPanel.java	/^    public int addHistogramPlot(String name, double[][] XY, double[] boundsX, double[] boundsY) {$/;"	m	class:Plot3DPanel
addHistogramPlot	src/org/math/plot/Plot3DPanel.java	/^    public int addHistogramPlot(String name, double[][] XY, double[][] dX) {$/;"	m	class:Plot3DPanel
addHistogramPlot	src/org/math/plot/Plot3DPanel.java	/^    public int addHistogramPlot(String name, double[][] XY, int nX, int nY) {$/;"	m	class:Plot3DPanel
addHistogramPlot	src/org/math/plot/Plot3DPanel.java	/^    public int addHistogramPlot(String name, double[][] XYdX) {$/;"	m	class:Plot3DPanel
addHistogramPlot	src/org/math/plot/canvas/Plot2DCanvas.java	/^	public int addHistogramPlot(String name, Color c, double[] X, double min, double max, int n) {$/;"	m	class:Plot2DCanvas
addHistogramPlot	src/org/math/plot/canvas/Plot2DCanvas.java	/^	public int addHistogramPlot(String name, Color c, double[] X, double... bounds) {$/;"	m	class:Plot2DCanvas
addHistogramPlot	src/org/math/plot/canvas/Plot2DCanvas.java	/^	public int addHistogramPlot(String name, Color c, double[] X, int n) {$/;"	m	class:Plot2DCanvas
addHistogramPlot	src/org/math/plot/canvas/Plot2DCanvas.java	/^	public int addHistogramPlot(String name, Color c, double[][] XY, double dX) {$/;"	m	class:Plot2DCanvas
addHistogramPlot	src/org/math/plot/canvas/Plot2DCanvas.java	/^	public int addHistogramPlot(String name, Color c, double[][] XY, double[] dX) {$/;"	m	class:Plot2DCanvas
addHistogramPlot	src/org/math/plot/canvas/Plot2DCanvas.java	/^	public int addHistogramPlot(String name, Color c, double[][] XYdX) {$/;"	m	class:Plot2DCanvas
addHistogramPlot	src/org/math/plot/canvas/Plot3DCanvas.java	/^    public int addHistogramPlot(String name, Color c, double[][] XY, double minX, double maxX, int nX, double minY, double maxY, int nY) {$/;"	m	class:Plot3DCanvas
addHistogramPlot	src/org/math/plot/canvas/Plot3DCanvas.java	/^    public int addHistogramPlot(String name, Color c, double[][] XY, double[] boundsX, double[] boundsY) {$/;"	m	class:Plot3DCanvas
addHistogramPlot	src/org/math/plot/canvas/Plot3DCanvas.java	/^    public int addHistogramPlot(String name, Color c, double[][] XY, double[][] dX) {$/;"	m	class:Plot3DCanvas
addHistogramPlot	src/org/math/plot/canvas/Plot3DCanvas.java	/^    public int addHistogramPlot(String name, Color c, double[][] XY, int nX, int nY) {$/;"	m	class:Plot3DCanvas
addHistogramPlot	src/org/math/plot/canvas/Plot3DCanvas.java	/^    public int addHistogramPlot(String name, Color c, double[][] XYdX) {$/;"	m	class:Plot3DCanvas
addInterNodeConnection	src/spiking/node/NodesManager.java	/^	public void addInterNodeConnection($/;"	m	class:NodesManager
addInterNodeConnection	src/spiking/node/NodesManager.java~	/^	public void addInterNodeConnection($/;"	m	class:NodesManager
addInterNodeConnectionParameters	src/spiking/node/NodesManager.java	/^	public void addInterNodeConnectionParameters($/;"	m	class:NodesManager
addInterNodeConnectionParameters	src/spiking/node/NodesManager.java~	/^	public void addInterNodeConnectionParameters($/;"	m	class:NodesManager
addInterNodeFire	src/spiking/controllers/node/NodeThread.java	/^	private void addInterNodeFire(Synapse syn, Double fireTime){$/;"	m	class:NodeThread	file:
addInterNodeSynapse	src/spiking/controllers/node/NodeThread.java	/^	public void addInterNodeSynapse($/;"	m	class:NodeThread
addInterNodeSynapse	src/spiking/node/SynapsesManager.java	/^	public void addInterNodeSynapse($/;"	m	class:SynapsesManager
addInterNodeThreadConnection	src/spiking/simulator/SpikingNeuralSimulator.java	/^	public void addInterNodeThreadConnection($/;"	m	class:SpikingNeuralSimulator
addLabel	src/org/math/plot/PlotPanel.java	/^    public void addLabel(String text, Color c, double... where) {$/;"	m	class:PlotPanel
addLabel	src/org/math/plot/canvas/PlotCanvas.java	/^    public void addLabel(String text, Color c, double... where) {$/;"	m	class:PlotCanvas
addLayer	src/org/math/plot/plots/Plot.java	/^    public void addLayer(LayerPlot q) {$/;"	m	class:Plot
addLegend	src/org/math/plot/PlotPanel.java	/^    public void addLegend(String location) {$/;"	m	class:PlotPanel
addLength	src/connectivity/nodes/ConnectivityPackageManager.java	/^	public void addLength(Integer src, Integer dst, double lenght) {$/;"	m	class:ConnectivityPackageManager
addLengthShapeParameter	src/connectivity/nodes/ConnectivityPackageManager.java	/^	public void addLengthShapeParameter(Integer src, Integer dst, double lenghtShapeParameter) {$/;"	m	class:ConnectivityPackageManager
addLinePlot	src/org/math/plot/Plot2DPanel.java	/^    public int addLinePlot(String name, Color color, double[] X, double[] Y) {$/;"	m	class:Plot2DPanel
addLinePlot	src/org/math/plot/Plot2DPanel.java	/^    public int addLinePlot(String name, Color color, double[] Y) {$/;"	m	class:Plot2DPanel
addLinePlot	src/org/math/plot/Plot2DPanel.java	/^    public int addLinePlot(String name, Color color, double[][] XY) {$/;"	m	class:Plot2DPanel
addLinePlot	src/org/math/plot/Plot2DPanel.java	/^    public int addLinePlot(String name, double[] X, double[] Y) {$/;"	m	class:Plot2DPanel
addLinePlot	src/org/math/plot/Plot2DPanel.java	/^    public int addLinePlot(String name, double[] Y) {$/;"	m	class:Plot2DPanel
addLinePlot	src/org/math/plot/Plot2DPanel.java	/^    public int addLinePlot(String name, double[][] XY) {$/;"	m	class:Plot2DPanel
addLinePlot	src/org/math/plot/Plot3DPanel.java	/^    public int addLinePlot(String name, Color color, double[] X, double[] Y, double[] Z) {$/;"	m	class:Plot3DPanel
addLinePlot	src/org/math/plot/Plot3DPanel.java	/^    public int addLinePlot(String name, Color color, double[][] XY) {$/;"	m	class:Plot3DPanel
addLinePlot	src/org/math/plot/Plot3DPanel.java	/^    public int addLinePlot(String name, double[] X, double[] Y, double[] Z) {$/;"	m	class:Plot3DPanel
addLinePlot	src/org/math/plot/Plot3DPanel.java	/^    public int addLinePlot(String name, double[][] XY) {$/;"	m	class:Plot3DPanel
addLinePlot	src/org/math/plot/canvas/Plot2DCanvas.java	/^	public int addLinePlot(String name, Color c, double[] X, double[] Y) {$/;"	m	class:Plot2DCanvas
addLinePlot	src/org/math/plot/canvas/Plot2DCanvas.java	/^	public int addLinePlot(String name, Color c, double[] Y) {$/;"	m	class:Plot2DCanvas
addLinePlot	src/org/math/plot/canvas/Plot2DCanvas.java	/^	public int addLinePlot(String name, Color c, double[][] XY) {$/;"	m	class:Plot2DCanvas
addLinePlot	src/org/math/plot/canvas/Plot3DCanvas.java	/^    public int addLinePlot(String name, Color c, double[] X, double[] Y, double[] Z) {$/;"	m	class:Plot3DCanvas
addLinePlot	src/org/math/plot/canvas/Plot3DCanvas.java	/^    public int addLinePlot(String name, Color c, double[][] XYZ) {$/;"	m	class:Plot3DCanvas
addNode	src/connectivity/nodes/ConnectivityPackageManager.java	/^	public void addNode(){$/;"	m	class:ConnectivityPackageManager
addNode	src/connectivity/nodes/ConnectivityPackageManager.java	/^	public void addNode(Node r){$/;"	m	class:ConnectivityPackageManager
addNode	src/connectivity/nodes/ConnectivityPackageManager.java	/^	public void addNode(String label, Double x, Double y, Double z ){$/;"	m	class:ConnectivityPackageManager
addNodeThread	src/spiking/node/NodesManager.java	/^	public void addNodeThread(NodeThread regT){$/;"	m	class:NodesManager
addNodeThread	src/spiking/node/NodesManager.java~	/^	public void addNodeThread(NodeThread regT){$/;"	m	class:NodesManager
addNodeThread	src/spiking/simulator/SpikingNeuralSimulator.java	/^	private void addNodeThread(NodeThread node){$/;"	m	class:SpikingNeuralSimulator	file:
addPlot	src/org/math/plot/Plot2DPanel.java	/^    public int addPlot(String type, String name, Color color, double[]... XY) {$/;"	m	class:Plot2DPanel
addPlot	src/org/math/plot/Plot3DPanel.java	/^    public int addPlot(String type, String name, Color c, double[]... XY) {$/;"	m	class:Plot3DPanel
addPlot	src/org/math/plot/PlotPanel.java	/^    public abstract int addPlot(String type, String name, Color c, double[]... v);$/;"	m	class:PlotPanel
addPlot	src/org/math/plot/PlotPanel.java	/^    public int addPlot(Plot newPlot) {$/;"	m	class:PlotPanel
addPlot	src/org/math/plot/PlotPanel.java	/^    public int addPlot(String type, String name, double[]... v) {$/;"	m	class:PlotPanel
addPlot	src/org/math/plot/canvas/PlotCanvas.java	/^    public int addPlot(Plot newPlot) {$/;"	m	class:PlotCanvas
addPlotToolBar	src/org/math/plot/PlotPanel.java	/^    public void addPlotToolBar(String location) {$/;"	m	class:PlotPanel
addPlotable	src/org/math/plot/PlotPanel.java	/^    public void addPlotable(Plotable p) {$/;"	m	class:PlotPanel
addPlotable	src/org/math/plot/canvas/PlotCanvas.java	/^    public void addPlotable(Plotable p) {$/;"	m	class:PlotCanvas
addQuantile	src/org/math/plot/plots/Plot.java	/^    public void addQuantile(QuantileLayerPlot q) {$/;"	m	class:Plot
addQuantile	src/org/math/plot/plots/Plot.java	/^    public void addQuantile(int a, double r, double q, boolean symetric) {$/;"	m	class:Plot
addQuantile	src/org/math/plot/plots/Plot.java	/^    public void addQuantile(int a, double r, double[] q, boolean symetric) {$/;"	m	class:Plot
addQuantiles	src/org/math/plot/plots/Plot.java	/^    public void addQuantiles(int a, double[] q) {$/;"	m	class:Plot
addQuantiles	src/org/math/plot/plots/Plot.java	/^    public void addQuantiles(int a, double[][] q) {$/;"	m	class:Plot
addQuantilestoPlot	src/org/math/plot/PlotPanel.java	/^    public void addQuantilestoPlot(int numPlot, int numAxe, double[] q) {$/;"	m	class:PlotPanel
addQuantilestoPlot	src/org/math/plot/PlotPanel.java	/^    public void addQuantilestoPlot(int numPlot, int numAxe, double[][] q) {$/;"	m	class:PlotPanel
addQuantilestoPlot	src/org/math/plot/canvas/PlotCanvas.java	/^    public void addQuantilestoPlot(int numPlot, int numAxe, double[] q) {$/;"	m	class:PlotCanvas
addQuantilestoPlot	src/org/math/plot/canvas/PlotCanvas.java	/^    public void addQuantilestoPlot(int numPlot, int numAxe, double[][] q) {$/;"	m	class:PlotCanvas
addQuantiletoPlot	src/org/math/plot/PlotPanel.java	/^    public void addQuantiletoPlot(int numPlot, int numAxe, double rate, boolean symetric, double q) {$/;"	m	class:PlotPanel
addQuantiletoPlot	src/org/math/plot/PlotPanel.java	/^    public void addQuantiletoPlot(int numPlot, int numAxe, double rate, boolean symetric, double[] q) {$/;"	m	class:PlotPanel
addQuantiletoPlot	src/org/math/plot/canvas/PlotCanvas.java	/^    public void addQuantiletoPlot(int numPlot, int numAxe, double rate, boolean symetric, double q) {$/;"	m	class:PlotCanvas
addQuantiletoPlot	src/org/math/plot/canvas/PlotCanvas.java	/^    public void addQuantiletoPlot(int numPlot, int numAxe, double rate, boolean symetric, double[] q) {$/;"	m	class:PlotCanvas
addScatterPlot	src/org/math/plot/Plot2DPanel.java	/^    public int addScatterPlot(String name, Color color, double[] X, double[] Y) {$/;"	m	class:Plot2DPanel
addScatterPlot	src/org/math/plot/Plot2DPanel.java	/^    public int addScatterPlot(String name, Color color, double[] Y) {$/;"	m	class:Plot2DPanel
addScatterPlot	src/org/math/plot/Plot2DPanel.java	/^    public int addScatterPlot(String name, Color color, double[][] XY) {$/;"	m	class:Plot2DPanel
addScatterPlot	src/org/math/plot/Plot2DPanel.java	/^    public int addScatterPlot(String name, double[] X, double[] Y) {$/;"	m	class:Plot2DPanel
addScatterPlot	src/org/math/plot/Plot2DPanel.java	/^    public int addScatterPlot(String name, double[] Y) {$/;"	m	class:Plot2DPanel
addScatterPlot	src/org/math/plot/Plot2DPanel.java	/^    public int addScatterPlot(String name, double[][] XY) {$/;"	m	class:Plot2DPanel
addScatterPlot	src/org/math/plot/Plot3DPanel.java	/^    public int addScatterPlot(String name, Color color, double[] X, double[] Y, double[] Z) {$/;"	m	class:Plot3DPanel
addScatterPlot	src/org/math/plot/Plot3DPanel.java	/^    public int addScatterPlot(String name, Color color, double[][] XY) {$/;"	m	class:Plot3DPanel
addScatterPlot	src/org/math/plot/Plot3DPanel.java	/^    public int addScatterPlot(String name, double[] X, double[] Y, double[] Z) {$/;"	m	class:Plot3DPanel
addScatterPlot	src/org/math/plot/Plot3DPanel.java	/^    public int addScatterPlot(String name, double[][] XY) {$/;"	m	class:Plot3DPanel
addScatterPlot	src/org/math/plot/canvas/Plot2DCanvas.java	/^	public int addScatterPlot(String name, Color c, double[] X, double[] Y) {$/;"	m	class:Plot2DCanvas
addScatterPlot	src/org/math/plot/canvas/Plot2DCanvas.java	/^	public int addScatterPlot(String name, Color c, double[] Y) {$/;"	m	class:Plot2DCanvas
addScatterPlot	src/org/math/plot/canvas/Plot2DCanvas.java	/^	public int addScatterPlot(String name, Color c, double[][] XY) {$/;"	m	class:Plot2DCanvas
addScatterPlot	src/org/math/plot/canvas/Plot3DCanvas.java	/^    public int addScatterPlot(String name, Color c, double[] X, double[] Y, double[] Z) {$/;"	m	class:Plot3DCanvas
addScatterPlot	src/org/math/plot/canvas/Plot3DCanvas.java	/^    public int addScatterPlot(String name, Color c, double[][] XYZ) {$/;"	m	class:Plot3DCanvas
addSelectionListener	src/org/math/plot/MatrixTablePanel.java	/^    public void addSelectionListener(ListSelectionListener lsitener) {$/;"	m	class:MatrixTablePanel
addStaircasePlot	src/org/math/plot/Plot2DPanel.java	/^    public int addStaircasePlot(String name, Color color, double[] X,double[] Y) {$/;"	m	class:Plot2DPanel
addStaircasePlot	src/org/math/plot/Plot2DPanel.java	/^    public int addStaircasePlot(String name, Color color, double[] Y) {$/;"	m	class:Plot2DPanel
addStaircasePlot	src/org/math/plot/Plot2DPanel.java	/^    public int addStaircasePlot(String name, Color color, double[][] XY) {$/;"	m	class:Plot2DPanel
addStaircasePlot	src/org/math/plot/Plot2DPanel.java	/^    public int addStaircasePlot(String name, double[] X,double[] Y) {$/;"	m	class:Plot2DPanel
addStaircasePlot	src/org/math/plot/Plot2DPanel.java	/^    public int addStaircasePlot(String name, double[] Y) {$/;"	m	class:Plot2DPanel
addStaircasePlot	src/org/math/plot/Plot2DPanel.java	/^    public int addStaircasePlot(String name, double[][] XY) {$/;"	m	class:Plot2DPanel
addStaircasePlot	src/org/math/plot/canvas/Plot2DCanvas.java	/^	public int addStaircasePlot(String name, Color c, double[] X, double[] Y) {$/;"	m	class:Plot2DCanvas
addStaircasePlot	src/org/math/plot/canvas/Plot2DCanvas.java	/^	public int addStaircasePlot(String name, Color c, double[] Y) {$/;"	m	class:Plot2DCanvas
addStaircasePlot	src/org/math/plot/canvas/Plot2DCanvas.java	/^	public int addStaircasePlot(String name, Color c, double[][] XY) {$/;"	m	class:Plot2DCanvas
addTableModelListener	src/org/math/plot/DataSelectTable.java	/^		public void addTableModelListener(TableModelListener l) {$/;"	m	class:DataSelectTable.Model
addType	src/connectivity/nodes/ConnectivityPackageManager.java	/^	public void addType(Integer src, Integer dst, Integer type) {$/;"	m	class:ConnectivityPackageManager
addVector	src/org/math/plot/plots/Plot.java	/^    public void addVector(double[][] v) {$/;"	m	class:Plot
addVectortoPlot	src/org/math/plot/PlotPanel.java	/^    public void addVectortoPlot(int numPlot, double[][] v) {$/;"	m	class:PlotPanel
addVectortoPlot	src/org/math/plot/canvas/PlotCanvas.java	/^    public void addVectortoPlot(int numPlot, double[][] v) {$/;"	m	class:PlotCanvas
adjustBounds	src/org/math/plot/canvas/PlotCanvas.java	/^    boolean adjustBounds = true;$/;"	f	class:PlotCanvas
adjustBoundsVisible	src/org/math/plot/components/PlotToolBar.java	/^    boolean adjustBoundsVisible = true;$/;"	f	class:PlotToolBar
affMap	src/spiking/node/plasticity/AfferentManager.java	/^	HashMap<Synapse, Afferent> affMap = new HashMap<>();$/;"	f	class:AfferentManager
ajustBoundsChanged	src/org/math/plot/components/PlotToolBar.java	/^    public void ajustBoundsChanged() {$/;"	m	class:PlotToolBar
allowEdit	src/org/math/plot/canvas/PlotCanvas.java	/^    public boolean allowEdit = true;$/;"	f	class:PlotCanvas
allowNote	src/org/math/plot/canvas/PlotCanvas.java	/^    public boolean allowNote = true;$/;"	f	class:PlotCanvas
allowNoteCoord	src/org/math/plot/canvas/PlotCanvas.java	/^    public boolean allowNoteCoord = true;$/;"	f	class:PlotCanvas
alpha	src/org/math/plot/plotObjects/PaintImage.java	/^    protected float alpha;$/;"	f	class:PaintImage
alpha	src/org/math/plot/plotObjects/RasterImage.java	/^	float alpha;$/;"	f	class:RasterImage
alpha	src/spiking/node/SynapsesManager.java	/^	public Double alpha =1000000.0;$/;"	f	class:SynapsesManager
alpha_lambda	src/spiking/node/NodesInterconnection.java	/^	private Double alpha_lambda=null;$/;"	f	class:NodesInterconnection	file:
amplitudeMatrix	src/spiking/node/external_inputs/ExternalInput.java	/^	private Double[][] amplitudeMatrix;$/;"	f	class:ExternalInput	file:
amplitudeMatrixInit	src/spiking/node/external_inputs/ExternalInput.java	/^	private void amplitudeMatrixInit(){$/;"	m	class:ExternalInput	file:
angle	src/org/math/plot/plotObjects/Label.java	/^	public double angle = 0;$/;"	f	class:Label
append	src/org/math/io/files/ASCIIFile.java	/^    public static void append(File f, String t) {$/;"	m	class:ASCIIFile
appendDoubleArray	src/org/math/io/files/BinaryFile.java	/^    public static void appendDoubleArray(File f, double[] array, String endian) {$/;"	m	class:BinaryFile
appendDoubleArray	src/org/math/io/stream/BinaryOutputStream.java	/^    public static void appendDoubleArray(OutputStream out, double[] array,$/;"	m	class:BinaryOutputStream
appendFloatArray	src/org/math/io/files/BinaryFile.java	/^    public static void appendFloatArray(File f, float[] array, String endian) {$/;"	m	class:BinaryFile
appendFloatArray	src/org/math/io/stream/BinaryOutputStream.java	/^    public static void appendFloatArray(OutputStream out, float[] array,$/;"	m	class:BinaryOutputStream
appendIntArray	src/org/math/io/files/BinaryFile.java	/^    public static void appendIntArray(File f, int[] array, String endian) {$/;"	m	class:BinaryFile
appendIntArray	src/org/math/io/stream/BinaryOutputStream.java	/^    public static void appendIntArray(OutputStream out, int[] array,$/;"	m	class:BinaryOutputStream
approx	src/org/math/plot/plotObjects/Label.java	/^	public static double approx(double val, int decimal) {$/;"	m	class:Label
asByte	src/org/math/plot/utils/NumbersUtils.java	/^    public static byte asByte(int a) {$/;"	m	class:NumbersUtils
asInt	src/org/math/plot/utils/NumbersUtils.java	/^    public static int asInt(long a) {$/;"	m	class:NumbersUtils
asin	src/org/math/plot/utils/FastMath.java	/^    public static double asin(double value) {$/;"	m	class:FastMath
asinDer1DivF1PowTab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] asinDer1DivF1PowTab = new double[ASIN_POWTABS_SIZE];$/;"	f	class:FastMath	file:
asinDer1DivF1Tab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] asinDer1DivF1Tab = new double[ASIN_TABS_SIZE];$/;"	f	class:FastMath	file:
asinDer2DivF2PowTab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] asinDer2DivF2PowTab = new double[ASIN_POWTABS_SIZE];$/;"	f	class:FastMath	file:
asinDer2DivF2Tab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] asinDer2DivF2Tab = new double[ASIN_TABS_SIZE];$/;"	f	class:FastMath	file:
asinDer3DivF3PowTab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] asinDer3DivF3PowTab = new double[ASIN_POWTABS_SIZE];$/;"	f	class:FastMath	file:
asinDer3DivF3Tab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] asinDer3DivF3Tab = new double[ASIN_TABS_SIZE];$/;"	f	class:FastMath	file:
asinDer4DivF4PowTab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] asinDer4DivF4PowTab = new double[ASIN_POWTABS_SIZE];$/;"	f	class:FastMath	file:
asinDer4DivF4Tab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] asinDer4DivF4Tab = new double[ASIN_TABS_SIZE];$/;"	f	class:FastMath	file:
asinInRange	src/org/math/plot/utils/FastMath.java	/^    public static double asinInRange(double value) {$/;"	m	class:FastMath
asinParamPowTab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] asinParamPowTab = new double[ASIN_POWTABS_SIZE];$/;"	f	class:FastMath	file:
asinPowTab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] asinPowTab = new double[ASIN_POWTABS_SIZE];$/;"	f	class:FastMath	file:
asinTab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] asinTab = new double[ASIN_TABS_SIZE];$/;"	f	class:FastMath	file:
atan	src/org/math/plot/utils/FastMath.java	/^    public static double atan(double value) {$/;"	m	class:FastMath
atan2	src/org/math/plot/utils/FastMath.java	/^    public static double atan2(double y, double x) {$/;"	m	class:FastMath
atanDer1DivF1Tab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] atanDer1DivF1Tab = new double[ATAN_TABS_SIZE];$/;"	f	class:FastMath	file:
atanDer2DivF2Tab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] atanDer2DivF2Tab = new double[ATAN_TABS_SIZE];$/;"	f	class:FastMath	file:
atanDer3DivF3Tab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] atanDer3DivF3Tab = new double[ATAN_TABS_SIZE];$/;"	f	class:FastMath	file:
atanDer4DivF4Tab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] atanDer4DivF4Tab = new double[ATAN_TABS_SIZE];$/;"	f	class:FastMath	file:
atanTab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] atanTab = new double[ATAN_TABS_SIZE];$/;"	f	class:FastMath	file:
attachLegend	src/org/math/plot/canvas/PlotCanvas.java	/^    public void attachLegend(LegendPanel lp) {$/;"	m	class:PlotCanvas
authorizedLogScale	src/org/math/plot/plotObjects/Base.java	/^	public boolean authorizedLogScale(int i) {$/;"	m	class:Base
autoSelectVariableParam	src/org/math/plot/DataSelectPanel.java	/^    void autoSelectVariableParam() {$/;"	m	class:DataSelectPanel
autowidth	src/org/math/plot/plots/HistogramPlot2D.java	/^    boolean autowidth;$/;"	f	class:HistogramPlot2D
avgNeuronalSignalSpeed	src/spiking/node/SynapsesManager.java	/^	private Double avgNeuronalSignalSpeed;$/;"	f	class:SynapsesManager	file:
avgNeuronalSignalSpeed	src/spiking/simulator/SpikingNeuralSimulator.java	/^	private Double avgNeuronalSignalSpeed = 5.1;$/;"	f	class:SpikingNeuralSimulator	file:
avg_neuronal_signal_speed	src/utils/configuration/SpikingSimulatorCfg.java	/^	private Double avg_neuronal_signal_speed;$/;"	f	class:SpikingSimulatorCfg	file:
axe	src/org/math/plot/plots/QuantileLayerPlot.java	/^	int axe;$/;"	f	class:QuantileLayerPlot
axesScales	src/org/math/plot/plotObjects/Base.java	/^	public String[] axesScales;$/;"	f	class:Base
axis	src/org/math/plot/plotObjects/BasePlot.java	/^	protected Axis[] axis;$/;"	f	class:BasePlot
axis	src/org/math/plot/plots/DensityLayerPlot.java	/^	int axis;$/;"	f	class:DensityLayerPlot
axis	src/org/math/plot/plots/GaussianDensityLayerPlot.java	/^	int axis;$/;"	f	class:GaussianDensityLayerPlot
axmap	src/spiking/node/SynapsesManager.java	/^	private HashMap<Synapse, Double> axmap;$/;"	f	class:SynapsesManager	file:
axonNeuronId	src/spiking/node/Synapse.java	/^	private Long axonNeuronId;$/;"	f	class:Synapse	file:
axonRegionId	src/spiking/node/Synapse.java	/^	private Integer axonRegionId;$/;"	f	class:Synapse	file:
axonalDelay	src/spiking/internode/InterNodeSpike.java	/^	private Double axonalDelay;$/;"	f	class:InterNodeSpike	file:
b	src/utils/tools/IntegerCouple.java	/^	private Integer b;$/;"	f	class:IntegerCouple	file:
b	src/utils/tools/LongCouple.java	/^	private Long b;$/;"	f	class:LongCouple	file:
badCurve	src/utils/statistics/StatisticsCollector.java	/^	private volatile Boolean badCurve=false;$/;"	f	class:StatisticsCollector	file:
badCurveGuessThreshold	src/spiking/node/NodesManager.java	/^	private final static Integer badCurveGuessThreshold= 15;$/;"	f	class:NodesManager	file:
badCurveGuessThreshold	src/spiking/node/NodesManager.java~	/^	private final static Integer badCurveGuessThreshold= 15;$/;"	f	class:NodesManager	file:
base	src/org/math/plot/canvas/PlotCanvas.java	/^    public Base base;$/;"	f	class:PlotCanvas
base	src/org/math/plot/plotObjects/Axis.java	/^	protected Base base;$/;"	f	class:Axis
base	src/org/math/plot/plotObjects/BasePlot.java	/^	protected Base base;$/;"	f	class:BasePlot
baseCoords	src/org/math/plot/plotObjects/Base.java	/^	public double[][] baseCoords;$/;"	f	class:Base
baseCoordsScreenProjectionRatio	src/org/math/plot/render/Projection.java	/^    protected abstract double[] baseCoordsScreenProjectionRatio(double[] xyz);$/;"	m	class:Projection
baseCoordsScreenProjectionRatio	src/org/math/plot/render/Projection2D.java	/^	protected double[] baseCoordsScreenProjectionRatio(double[] xy) {$/;"	m	class:Projection2D
baseCoordsScreenProjectionRatio	src/org/math/plot/render/Projection3D.java	/^    protected double[] baseCoordsScreenProjectionRatio(double[] xyz) {$/;"	m	class:Projection3D
baseScreenCoords	src/org/math/plot/render/Projection.java	/^    protected int[][] baseScreenCoords;$/;"	f	class:Projection
base_offset	src/org/math/plot/plotObjects/Label.java	/^	protected double[] base_offset;$/;"	f	class:Label
base_offset	src/org/math/plot/render/AbstractDrawer.java	/^    protected double[] base_offset;$/;"	f	class:AbstractDrawer
beta	src/spiking/node/SynapsesManager.java	/^	public Double beta  = madel\/alpha;$/;"	f	class:SynapsesManager
bigEndian	src/org/math/io/files/BinaryFile.java	/^    private boolean bigEndian;$/;"	f	class:BinaryFile	file:
bigEndian	src/org/math/io/stream/BinaryInputStream.java	/^    protected boolean bigEndian;$/;"	f	class:BinaryInputStream
bigEndian	src/org/math/io/stream/BinaryOutputStream.java	/^    protected boolean bigEndian;$/;"	f	class:BinaryOutputStream
bitSizeForSignedValue	src/org/math/plot/utils/NumbersUtils.java	/^    public static int bitSizeForSignedValue(int value) {$/;"	m	class:NumbersUtils
bitSizeForSignedValue	src/org/math/plot/utils/NumbersUtils.java	/^    public static int bitSizeForSignedValue(long value) {$/;"	m	class:NumbersUtils
bitSizeForUnsignedValue	src/org/math/plot/utils/NumbersUtils.java	/^    public static int bitSizeForUnsignedValue(int value) {$/;"	m	class:NumbersUtils
bitSizeForUnsignedValue	src/org/math/plot/utils/NumbersUtils.java	/^    public static int bitSizeForUnsignedValue(long value) {$/;"	m	class:NumbersUtils
bop_to_cycle_factor	src/spiking/simulator/SpikingNeuralSimulator.java	/^	private static final Double bop_to_cycle_factor=1.0;$/;"	f	class:SpikingNeuralSimulator	file:
borderCoeff	src/org/math/plot/render/Projection.java	/^    protected double borderCoeff = 1 - 2 * DEFAULT_BORDER;$/;"	f	class:Projection
botNE	src/org/math/plot/plots/CloudPlot3D.java	/^    double[][] botNE;$/;"	f	class:CloudPlot3D
botNW	src/org/math/plot/plots/CloudPlot3D.java	/^    double[][] botNW;$/;"	f	class:CloudPlot3D
botSE	src/org/math/plot/plots/CloudPlot3D.java	/^    double[][] botSE;$/;"	f	class:CloudPlot3D
botSW	src/org/math/plot/plots/CloudPlot3D.java	/^    double[][] botSW;$/;"	f	class:CloudPlot3D
bottomLeft	src/org/math/plot/plots/HistogramPlot2D.java	/^    double[][] bottomLeft;$/;"	f	class:HistogramPlot2D
bottomNE	src/org/math/plot/plots/HistogramPlot3D.java	/^    double[][] bottomNE;$/;"	f	class:HistogramPlot3D
bottomNW	src/org/math/plot/plots/HistogramPlot3D.java	/^    double[][] bottomNW;$/;"	f	class:HistogramPlot3D
bottomRight	src/org/math/plot/plots/HistogramPlot2D.java	/^    double[][] bottomRight;$/;"	f	class:HistogramPlot2D
bottomSE	src/org/math/plot/plots/HistogramPlot3D.java	/^    double[][] bottomSE;$/;"	f	class:HistogramPlot3D
bottomSW	src/org/math/plot/plots/HistogramPlot3D.java	/^    double[][] bottomSW;$/;"	f	class:HistogramPlot3D
bounds	src/org/math/plot/utils/Histogram.java	/^	private static double[] bounds(double[] values, double min, double max, int n) {$/;"	m	class:Histogram	file:
bounds	src/org/math/plot/utils/Histogram.java	/^	private static double[] bounds(double[] values, int n) {$/;"	m	class:Histogram	file:
bounds_auto	src/org/math/plot/components/ScalesFrame.java	/^        private JButton bounds_auto = new JButton("Automatic");$/;"	f	class:ScalesFrame.ScalePanel	file:
bounds_label	src/org/math/plot/components/ScalesFrame.java	/^        private JLabel bounds_label = new JLabel("Bounds");$/;"	f	class:ScalesFrame.ScalePanel	file:
build	src/org/math/plot/plots/CloudPlot2D.java	/^    private void build() {$/;"	m	class:CloudPlot2D	file:
build	src/org/math/plot/plots/CloudPlot3D.java	/^    private void build() {$/;"	m	class:CloudPlot3D	file:
build	src/org/math/plot/plots/HistogramPlot2D.java	/^    private void build() {$/;"	m	class:HistogramPlot2D	file:
build	src/org/math/plot/plots/HistogramPlot3D.java	/^    private void build() {$/;"	m	class:HistogramPlot3D	file:
buildConstraints	src/org/math/plot/ParametersPanel.java	/^	private void buildConstraints(GridBagConstraints gbc, int gx, int gy, int gw, int gh, int wx, int wy) {$/;"	m	class:ParametersPanel	file:
buildConstraints	src/org/math/plot/components/ScalesFrame.java	/^        private void buildConstraints(GridBagConstraints gbc, int gx, int gy, int gw, int gh, int wx, int wy) {$/;"	m	class:ScalesFrame.ScalePanel	file:
buildIntSeq	src/org/math/plot/DataSelectPanel.java	/^        int[] buildIntSeq(int min, int max) {$/;"	m	class:DataSelectPanel.ParameterRow
buildIntSeq	src/org/math/plot/DataSelectTable.java	/^		int[] buildIntSeq(int min, int max) {$/;"	m	class:DataSelectTable.ParameterRow
buildRows	src/org/math/plot/DataSelectPanel.java	/^    void buildRows(int... selectedaxis) {$/;"	m	class:DataSelectPanel
buildRows	src/org/math/plot/DataSelectTable.java	/^	void buildRows(int... selectedaxis) {$/;"	m	class:DataSelectTable
buildXY	src/org/math/plot/utils/Array.java	/^    public static double[][] buildXY(double Xmin, double Xmax, double[] Y) {$/;"	m	class:Array
buildXY	src/org/math/plot/utils/Array.java	/^    public static double[][] buildXY(double[] X, double[] Y) {$/;"	m	class:Array
buildXYZ_list	src/org/math/plot/plots/GridPlot3D.java	/^    private void buildXYZ_list() {$/;"	m	class:GridPlot3D	file:
buildexptable	src/utils/math/FastMath.java	/^	private void buildexptable(double min, double max, double step){$/;"	m	class:FastMath	file:
burnInterNodeSpike	src/spiking/controllers/node/NodeThread.java	/^	public void burnInterNodeSpike(InterNodeSpike irs){$/;"	m	class:NodeThread
burnNeuron	src/spiking/controllers/node/NodeThread.java	/^	public void burnNeuron($/;"	m	class:NodeThread
burnTime	src/spiking/internode/InterNodeSpike.java	/^	private Double burnTime;$/;"	f	class:InterNodeSpike	file:
burnTime	src/spiking/node/SpikingSynapse.java	/^	private Double burnTime;$/;"	f	class:SpikingSynapse	file:
burnTime	src/spiking/node/spikes/FixedBurnSpike.java	/^	private Double burnTime;$/;"	f	class:FixedBurnSpike	file:
burnTime	src/utils/statistics/CollectedBurn.java	/^	private Double burnTime; $/;"	f	class:CollectedBurn	file:
burningNeuronId	src/spiking/node/neuron/BurningNeuron.java	/^	private Long burningNeuronId;$/;"	f	class:BurningNeuron	file:
burningNeuronInterRegionConnections	src/spiking/node/SynapsesManager.java	/^	private HashMap<Long, ArrayList<Synapse>> burningNeuronInterRegionConnections;$/;"	f	class:SynapsesManager	file:
burningNeuronSynapses	src/spiking/node/SynapsesManager.java	/^	private HashMap<Long, ArrayList<Synapse>> burningNeuronSynapses;$/;"	f	class:SynapsesManager	file:
burningQueueSpikes	src/spiking/controllers/node/NodeThread.java	/^	private PriorityQueue<FixedBurnSpike> burningQueueSpikes=new PriorityQueue<FixedBurnSpike>();$/;"	f	class:NodeThread	file:
burningRegionId	src/spiking/node/neuron/BurningNeuron.java	/^	private Integer burningRegionId;$/;"	f	class:BurningNeuron	file:
burningSpikesCounter	src/utils/statistics/StatisticsCollector.java	/^	private volatile long burningSpikesCounter=0l;$/;"	f	class:StatisticsCollector	file:
burningSpikesHashMap	src/utils/statistics/StatisticsCollector.java	/^	private volatile HashMap<Long, SpikingSynapse>burningSpikesHashMap = new HashMap<Long, SpikingSynapse>();$/;"	f	class:StatisticsCollector	file:
burning_ltd	src/spiking/controllers/node/NodeThread.java	/^	private void burning_ltd(Synapse syn, Double burningTime, Double lastFiringTime){$/;"	m	class:NodeThread	file:
buttonAdjustBounds	src/org/math/plot/components/PlotToolBar.java	/^    protected JButton buttonAdjustBounds;$/;"	f	class:PlotToolBar
buttonCenter	src/org/math/plot/components/PlotToolBar.java	/^    protected JToggleButton buttonCenter;$/;"	f	class:PlotToolBar
buttonDatas	src/org/math/plot/components/PlotToolBar.java	/^    protected JButton buttonDatas;$/;"	f	class:PlotToolBar
buttonGroup	src/org/math/plot/components/PlotToolBar.java	/^    protected ButtonGroup buttonGroup;$/;"	f	class:PlotToolBar
buttonPasteToClipboard	src/org/math/plot/components/DataToolBar.java	/^	protected JButton buttonPasteToClipboard;$/;"	f	class:DataToolBar
buttonReset	src/org/math/plot/components/PlotToolBar.java	/^    protected JButton buttonReset;$/;"	f	class:PlotToolBar
buttonRotate	src/org/math/plot/components/PlotToolBar.java	/^    protected JToggleButton buttonRotate;$/;"	f	class:PlotToolBar
buttonSaveFile	src/org/math/plot/components/DataToolBar.java	/^	protected JButton buttonSaveFile;$/;"	f	class:DataToolBar
buttonSavePNGFile	src/org/math/plot/components/PlotToolBar.java	/^    protected JButton buttonSavePNGFile;$/;"	f	class:PlotToolBar
buttonSetScales	src/org/math/plot/components/PlotToolBar.java	/^    protected JButton buttonSetScales;$/;"	f	class:PlotToolBar
buttonZoom	src/org/math/plot/components/PlotToolBar.java	/^    protected JToggleButton buttonZoom;$/;"	f	class:PlotToolBar
byteAsUnsigned	src/org/math/plot/utils/NumbersUtils.java	/^    public static short byteAsUnsigned(byte value) {$/;"	m	class:NumbersUtils
c	src/spiking/node/neuron/NodeNeuronsManager.java	/^	private Double c=0.04;$/;"	f	class:NodeNeuronsManager	file:
c	src/utils/configuration/NeuManCfg.java	/^	private Double c;$/;"	f	class:NeuManCfg	file:
calculateCompressionFactor	src/spiking/simulator/SpikingNeuralSimulator.java	/^	private void calculateCompressionFactor(){$/;"	m	class:SpikingNeuralSimulator	file:
canvas	src/org/math/plot/render/AbstractDrawer.java	/^    public PlotCanvas canvas;$/;"	f	class:AbstractDrawer
cat	src/org/math/plot/utils/Array.java	/^    public static String cat(Object[] array) {$/;"	m	class:Array
cat	src/org/math/plot/utils/Array.java	/^    public static String cat(Object[][] array) {$/;"	m	class:Array
cat	src/org/math/plot/utils/Array.java	/^    public static String cat(String columnsSeparator, String rowsSeparator, Object[][] array) {$/;"	m	class:Array
cat	src/org/math/plot/utils/Array.java	/^    public static String cat(String separator, Object[] array) {$/;"	m	class:Array
cat	src/org/math/plot/utils/Array.java	/^    public static String cat(String separator, double[] array) {$/;"	m	class:Array
cbrt	src/org/math/plot/utils/FastMath.java	/^    public static double cbrt(double value) {$/;"	m	class:FastMath
cbrtSlopeHiTab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] cbrtSlopeHiTab = new double[MAX_DOUBLE_EXPONENT-MIN_DOUBLE_EXPONENT+1];$/;"	f	class:FastMath	file:
cbrtSlopeLoTab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] cbrtSlopeLoTab = new double[CBRT_LO_TAB_SIZE];$/;"	f	class:FastMath	file:
cbrtXCbrtHiTab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] cbrtXCbrtHiTab = new double[MAX_DOUBLE_EXPONENT-MIN_DOUBLE_EXPONENT+1];$/;"	f	class:FastMath	file:
cbrtXCbrtLoTab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] cbrtXCbrtLoTab = new double[CBRT_LO_TAB_SIZE];$/;"	f	class:FastMath	file:
ceil	src/org/math/plot/utils/FastMath.java	/^    public static double ceil(double value) {$/;"	m	class:FastMath
ceil	src/org/math/plot/utils/FastMath.java	/^    public static float ceil(float value) {$/;"	m	class:FastMath
ceilingPowerOfTwo	src/org/math/plot/utils/NumbersUtils.java	/^    public static int ceilingPowerOfTwo(int a) {$/;"	m	class:NumbersUtils
ceilingPowerOfTwo	src/org/math/plot/utils/NumbersUtils.java	/^    public static long ceilingPowerOfTwo(long a) {$/;"	m	class:NumbersUtils
centers	src/org/math/plot/utils/Histogram.java	/^	private static double[] centers(double[] bounds) {$/;"	m	class:Histogram	file:
centers_2D	src/org/math/plot/utils/Histogram.java	/^	private static double[][] centers_2D(double[] boundsX, double[] boundsY) {$/;"	m	class:Histogram	file:
centers_3D	src/org/math/plot/utils/Histogram.java	/^	private static double[][] centers_3D(double[] boundsX, double[] boundsY, double[] boundsZ) {$/;"	m	class:Histogram	file:
changePlotColor	src/org/math/plot/PlotPanel.java	/^    public void changePlotColor(int I, Color c) {$/;"	m	class:PlotPanel
changePlotColor	src/org/math/plot/canvas/PlotCanvas.java	/^    public void changePlotColor(int I, Color c) {$/;"	m	class:PlotCanvas
changePlotData	src/org/math/plot/PlotPanel.java	/^    public void changePlotData(int I, double[]... XY) {$/;"	m	class:PlotPanel
changePlotData	src/org/math/plot/canvas/PlotCanvas.java	/^    public void changePlotData(int I, double[]... XY) {$/;"	m	class:PlotCanvas
changePlotName	src/org/math/plot/PlotPanel.java	/^    public void changePlotName(int I, String name) {$/;"	m	class:PlotPanel
changePlotName	src/org/math/plot/canvas/PlotCanvas.java	/^    public void changePlotName(int I, String name) {$/;"	m	class:PlotCanvas
check	src/org/math/plot/DataSelectPanel.java	/^        boolean check(Object value) {$/;"	m	class:DataSelectPanel.ParameterRow
check	src/org/math/plot/DataSelectTable.java	/^		boolean check(Object value) {$/;"	m	class:DataSelectTable.ParameterRow
checkAll	src/utils/statistics/StatisticsCollector.java	/^	public void checkAll(){$/;"	m	class:StatisticsCollector
checkBitPositions	src/org/math/plot/utils/NumbersUtils.java	/^    private static boolean checkBitPositions(int firstBitPos, int lastBitPosExcl, int bitSize) {$/;"	m	class:NumbersUtils	file:
checkBitPositionsByte	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean checkBitPositionsByte(int firstBitPos, int lastBitPosExcl) {$/;"	m	class:NumbersUtils
checkBitPositionsInt	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean checkBitPositionsInt(int firstBitPos, int lastBitPosExcl) {$/;"	m	class:NumbersUtils
checkBitPositionsLong	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean checkBitPositionsLong(int firstBitPos, int lastBitPosExcl) {$/;"	m	class:NumbersUtils
checkBitPositionsShort	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean checkBitPositionsShort(int firstBitPos, int lastBitPosExcl) {$/;"	m	class:NumbersUtils
checkBitSizeForSignedInt	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean checkBitSizeForSignedInt(int bitSize) {$/;"	m	class:NumbersUtils
checkBitSizeForSignedLong	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean checkBitSizeForSignedLong(int bitSize) {$/;"	m	class:NumbersUtils
checkBitSizeForUnsignedInt	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean checkBitSizeForUnsignedInt(int bitSize) {$/;"	m	class:NumbersUtils
checkBitSizeForUnsignedLong	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean checkBitSizeForUnsignedLong(int bitSize) {$/;"	m	class:NumbersUtils
checkColumnDimension	src/org/math/plot/utils/Array.java	/^    public static void checkColumnDimension(double[][] M, int n) {$/;"	m	class:Array
checkIsInRange	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean checkIsInRange(double min, double max, double a) {$/;"	m	class:NumbersUtils
checkIsInRange	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean checkIsInRange(float min, float max, float a) {$/;"	m	class:NumbersUtils
checkIsInRange	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean checkIsInRange(int min, int max, int a) {$/;"	m	class:NumbersUtils
checkIsInRange	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean checkIsInRange(long min, long max, long a) {$/;"	m	class:NumbersUtils
checkIsInRangeSigned	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean checkIsInRangeSigned(int a, int bitSize) {$/;"	m	class:NumbersUtils
checkIsInRangeSigned	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean checkIsInRangeSigned(long a, int bitSize) {$/;"	m	class:NumbersUtils
checkIsInRangeUnsigned	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean checkIsInRangeUnsigned(int a, int bitSize) {$/;"	m	class:NumbersUtils
checkIsInRangeUnsigned	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean checkIsInRangeUnsigned(long a, int bitSize) {$/;"	m	class:NumbersUtils
checkLength	src/org/math/plot/utils/Array.java	/^    public static void checkLength(double[] M, int n) {$/;"	m	class:Array
checkRadix	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean checkRadix(int radix) {$/;"	m	class:NumbersUtils
checkRowDimension	src/org/math/plot/utils/Array.java	/^    public static void checkRowDimension(double[][] M, int m) {$/;"	m	class:Array
checkall	src/utils/statistics/StatisticsCollector.java	/^	private volatile Boolean checkall=false;$/;"	f	class:StatisticsCollector	file:
chooseFile	src/org/math/plot/components/DataToolBar.java	/^	void chooseFile() {$/;"	m	class:DataToolBar
choosePNGFile	src/org/math/plot/components/PlotToolBar.java	/^    void choosePNGFile() {$/;"	m	class:PlotToolBar
clearLayers	src/org/math/plot/plots/Plot.java	/^    public void clearLayers() {$/;"	m	class:Plot
clearNotes	src/org/math/plot/canvas/PlotCanvas.java	/^    public void clearNotes() {$/;"	m	class:PlotCanvas
close	src/org/math/io/littleendian/LEDataInputStream.java	/^    public void close() throws IOException {$/;"	m	class:LEDataInputStream
close	src/org/math/io/littleendian/LEDataOutputStream.java	/^    public final void close() throws IOException {$/;"	m	class:LEDataOutputStream
close	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final void close() throws IOException {$/;"	m	class:LERandomAccessFile
closeDB	src/spiking/controllers/node/NodeThread.java	/^	private void closeDB(){$/;"	m	class:NodeThread	file:
closeDb	src/spiking/node/Node.java	/^	public void closeDb(){$/;"	m	class:Node
collectActive	src/utils/statistics/StatisticsCollector.java	/^	public synchronized void collectActive(){$/;"	m	class:StatisticsCollector
collectActive2passive	src/utils/statistics/StatisticsCollector.java	/^	public synchronized void collectActive2passive(){$/;"	m	class:StatisticsCollector
collectBurnSpike	src/utils/statistics/StatisticsCollector.java	/^	public synchronized void collectBurnSpike($/;"	m	class:StatisticsCollector
collectFireSpike	src/utils/statistics/StatisticsCollector.java	/^	public synchronized void collectFireSpike($/;"	m	class:StatisticsCollector
collectMissedFire	src/utils/statistics/StatisticsCollector.java	/^	public synchronized void collectMissedFire(Double missedAxonalDelay){$/;"	m	class:StatisticsCollector
collectPassive	src/utils/statistics/StatisticsCollector.java	/^	public synchronized void collectPassive(){$/;"	m	class:StatisticsCollector
collectPassive2active	src/utils/statistics/StatisticsCollector.java	/^	public synchronized void collectPassive2active(){$/;"	m	class:StatisticsCollector
color	src/org/math/plot/components/DatasFrame.java	/^		JButton color;$/;"	f	class:DatasFrame.DataPanel
color	src/org/math/plot/components/LegendPanel.java	/^        JPanel color;$/;"	f	class:LegendPanel.Legend
color	src/org/math/plot/plotObjects/Axis.java	/^	protected Color color;$/;"	f	class:Axis
color	src/org/math/plot/plotObjects/BasePlot.java	/^	protected Color color;$/;"	f	class:BasePlot
color	src/org/math/plot/plotObjects/Label.java	/^	protected Color color;$/;"	f	class:Label
color	src/org/math/plot/plotObjects/Line.java	/^	protected Color color;$/;"	f	class:Line
color	src/org/math/plot/plots/Plot.java	/^        JButton color;$/;"	f	class:Plot.DefaultDataPanel
color	src/org/math/plot/plots/Plot.java	/^    public Color color;$/;"	f	class:Plot
color	src/org/math/plot/render/AbstractDrawer.java	/^    protected Color color = DEFAULT_COLOR;$/;"	f	class:AbstractDrawer
colorborder	src/org/math/plot/components/LegendPanel.java	/^        Border colorborder;$/;"	f	class:LegendPanel.Legend
columnclasses	src/org/math/plot/DataSelectTable.java	/^	LinkedList<Class< ? >> columnclasses;$/;"	f	class:DataSelectTable
comp2D	src/org/math/plot/render/AbstractDrawer.java	/^    protected Graphics2D comp2D;$/;"	f	class:AbstractDrawer
compareTo	src/spiking/controllers/node/NodeLink.java	/^	public int compareTo(NodeLink o) {$/;"	m	class:NodeLink
compareTo	src/spiking/internode/InterNodeBurningSpike.java	/^    public int compareTo(InterNodeBurningSpike node){$/;"	m	class:InterNodeBurningSpike
compareTo	src/spiking/node/Synapse.java	/^	public int compareTo(Synapse o) {$/;"	m	class:Synapse
compareTo	src/spiking/node/spikes/FixedBurnSpike.java	/^	public int compareTo(FixedBurnSpike node){$/;"	m	class:FixedBurnSpike
compareTo	src/utils/tools/CompressedFire.java	/^	public int compareTo(CompressedFire o) {$/;"	m	class:CompressedFire
compareTo	src/utils/tools/IntegerCouple.java	/^	public int compareTo(IntegerCouple o) {$/;"	m	class:IntegerCouple
compareTo	src/utils/tools/LongCouple.java	/^	public int compareTo(LongCouple o) {$/;"	m	class:LongCouple
compareTo	src/utils/tools/NiceNode.java	/^    public int compareTo(NiceNode node){$/;"	m	class:NiceNode
completed	src/spiking/controllers/node/NodeThread.java	/^	private void completed(){$/;"	m	class:NodeThread	file:
completing	src/spiking/simulator/SpikingNeuralSimulator.java	/^	private int completing;$/;"	f	class:SpikingNeuralSimulator	file:
componentHidden	src/org/math/plot/DataPanel.java	/^    public void componentHidden(ComponentEvent e) {$/;"	m	class:DataPanel
componentHidden	src/org/math/plot/canvas/PlotCanvas.java	/^    public void componentHidden(ComponentEvent e) {$/;"	m	class:PlotCanvas
componentHidden	src/org/math/plot/components/LegendPanel.java	/^    public void componentHidden(ComponentEvent e) {$/;"	m	class:LegendPanel
componentMoved	src/org/math/plot/DataPanel.java	/^    public void componentMoved(ComponentEvent e) {$/;"	m	class:DataPanel
componentMoved	src/org/math/plot/canvas/PlotCanvas.java	/^    public void componentMoved(ComponentEvent e) {$/;"	m	class:PlotCanvas
componentMoved	src/org/math/plot/components/LegendPanel.java	/^    public void componentMoved(ComponentEvent e) {$/;"	m	class:LegendPanel
componentResized	src/org/math/plot/DataPanel.java	/^    public void componentResized(ComponentEvent e) {$/;"	m	class:DataPanel
componentResized	src/org/math/plot/canvas/PlotCanvas.java	/^    public void componentResized(ComponentEvent e) {$/;"	m	class:PlotCanvas
componentResized	src/org/math/plot/components/LegendPanel.java	/^    public void componentResized(ComponentEvent e) {$/;"	m	class:LegendPanel
componentShown	src/org/math/plot/DataPanel.java	/^    public void componentShown(ComponentEvent e) {$/;"	m	class:DataPanel
componentShown	src/org/math/plot/canvas/PlotCanvas.java	/^    public void componentShown(ComponentEvent e) {$/;"	m	class:PlotCanvas
componentShown	src/org/math/plot/components/LegendPanel.java	/^    public void componentShown(ComponentEvent e) {$/;"	m	class:LegendPanel
compressedFireTime	src/utils/tools/CompressedFire.java	/^	private Double compressedFireTime;$/;"	f	class:CompressedFire	file:
compressedNeuronId	src/utils/tools/CompressedFire.java	/^	private Integer compressedNeuronId;$/;"	f	class:CompressedFire	file:
compressionFactor	src/spiking/node/NodesManager.java	/^	private double compressionFactor=1.0;$/;"	f	class:NodesManager	file:
compressionFactor	src/spiking/node/NodesManager.java~	/^	private double compressionFactor=1.0;$/;"	f	class:NodesManager	file:
compressionFactor	src/spiking/simulator/SpikingNeuralSimulator.java	/^	private double compressionFactor;$/;"	f	class:SpikingNeuralSimulator	file:
compressionFactor	src/utils/statistics/CollectedFire.java	/^	private Double compressionFactor; $/;"	f	class:CollectedFire	file:
compressor	src/utils/statistics/StatisticsCollector.java	/^	private volatile HashMap<CompressedFire, Integer> compressor = new HashMap<CompressedFire, Integer>();$/;"	f	class:StatisticsCollector	file:
computeNbrOfChars	src/org/math/plot/utils/NumbersUtils.java	/^    public static int computeNbrOfChars(int value, int radix) {$/;"	m	class:NumbersUtils
computeNbrOfChars	src/org/math/plot/utils/NumbersUtils.java	/^    public static int computeNbrOfChars(int value, int radix, int paddingUpTo) {$/;"	m	class:NumbersUtils
computeNbrOfChars	src/org/math/plot/utils/NumbersUtils.java	/^    public static int computeNbrOfChars(long value, int radix) {$/;"	m	class:NumbersUtils
computeNbrOfChars	src/org/math/plot/utils/NumbersUtils.java	/^    public static int computeNbrOfChars(long value, int radix, int paddingUpTo) {$/;"	m	class:NumbersUtils
computeNbrOfDigits	src/org/math/plot/utils/NumbersUtils.java	/^    public static int computeNbrOfDigits(int value, int radix) {$/;"	m	class:NumbersUtils
computeNbrOfDigits	src/org/math/plot/utils/NumbersUtils.java	/^    public static int computeNbrOfDigits(int value, int radix, int paddingUpTo) {$/;"	m	class:NumbersUtils
computeNbrOfDigits	src/org/math/plot/utils/NumbersUtils.java	/^    public static int computeNbrOfDigits(long value, int radix) {$/;"	m	class:NumbersUtils
computeNbrOfDigits	src/org/math/plot/utils/NumbersUtils.java	/^    public static int computeNbrOfDigits(long value, int radix, int paddingUpTo) {$/;"	m	class:NumbersUtils
computeNbrOfDigits_negValue	src/org/math/plot/utils/NumbersUtils.java	/^    private static int computeNbrOfDigits_negValue(int negValue, int radix) {$/;"	m	class:NumbersUtils	file:
computeNbrOfDigits_negValue	src/org/math/plot/utils/NumbersUtils.java	/^    private static int computeNbrOfDigits_negValue(long negValue, int radix) {$/;"	m	class:NumbersUtils	file:
concatenate	src/org/math/io/files/ASCIIFile.java	/^    public static void concatenate(File f1, File f2) {$/;"	m	class:ASCIIFile
connection	src/utils/configuration/SpikingSimulatorCfg.java	/^	private ArrayList<RegionInterconnectionCfg> connection = new ArrayList<RegionInterconnectionCfg>();$/;"	f	class:SpikingSimulatorCfg	file:
connectionMatrix	src/spiking/node/Node.java	/^	private HashMap<LongCouple, Double> connectionMatrix = new HashMap<>();$/;"	f	class:Node	file:
connection_probability	src/utils/configuration/RegionInterconnectionCfg.java	/^	private Double connection_probability;$/;"	f	class:RegionInterconnectionCfg	file:
connectivity.conn_package	src/connectivity/conn_package/PackageReader.java	/^package connectivity.conn_package;$/;"	p
connectivity.nodes	src/connectivity/nodes/ConnectivityPackageManager.java	/^package connectivity.nodes;$/;"	p
connectivity.nodes	src/connectivity/nodes/Node.java	/^package connectivity.nodes;$/;"	p
constant_Q	src/org/math/plot/plots/DensityLayerPlot.java	/^	double[] constant_Q;$/;"	f	class:DensityLayerPlot
constant_sigma	src/org/math/plot/plots/GaussianDensityLayerPlot.java	/^	double constant_sigma = 0;$/;"	f	class:GaussianDensityLayerPlot
container	src/org/math/plot/components/LegendPanel.java	/^    JPanel container;$/;"	f	class:LegendPanel
convertXY	src/org/math/plot/canvas/Plot2DCanvas.java	/^	private static double[][] convertXY(double[]... XY) {$/;"	m	class:Plot2DCanvas	file:
convertXYZ	src/org/math/plot/canvas/Plot3DCanvas.java	/^    private static double[][] convertXYZ(double[]... XYZ) {$/;"	m	class:Plot3DCanvas	file:
convertY	src/org/math/plot/canvas/Plot2DCanvas.java	/^	private static double[][] convertY(double[] XY) {$/;"	m	class:Plot2DCanvas	file:
coord	src/org/math/plot/plotObjects/Label.java	/^	protected double[] coord;$/;"	f	class:Label
coordNoted	src/org/math/plot/plots/Plot.java	/^    public double[] coordNoted;$/;"	f	class:Plot
coordToString	src/org/math/plot/plotObjects/Label.java	/^	public static String coordToString(double... c) {$/;"	m	class:Label
copy	src/org/math/plot/utils/Array.java	/^    public static double[] copy(double[] M) {$/;"	m	class:Array
copy	src/org/math/plot/utils/Array.java	/^    public static double[][] copy(double[][] M) {$/;"	m	class:Array
copyFile	src/org/math/io/files/DataFile.java	/^    public static void copyFile(File in, File out) throws IOException {$/;"	m	class:DataFile
copySign	src/org/math/plot/utils/FastMath.java	/^    public static double copySign(double magnitude, double sign) {$/;"	m	class:FastMath
copySign	src/org/math/plot/utils/FastMath.java	/^    public static float copySign(float magnitude, float sign) {$/;"	m	class:FastMath
cornerE	src/org/math/plot/plotObjects/Label.java	/^	protected double cornerE = 0.5;$/;"	f	class:Label
cornerN	src/org/math/plot/plotObjects/Label.java	/^	protected double cornerN = 0.5;$/;"	f	class:Label
cos	src/org/math/plot/render/Projection3D.java	/^    private double cos(double x) {$/;"	m	class:Projection3D	file:
cos	src/org/math/plot/utils/FastMath.java	/^    public static double cos(double angle) {$/;"	m	class:FastMath
cosQuick	src/org/math/plot/utils/FastMath.java	/^    public static double cosQuick(double angle) {$/;"	m	class:FastMath
cosTab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] cosTab = new double[SIN_COS_TABS_SIZE];$/;"	f	class:FastMath	file:
cos_phi	src/org/math/plot/render/Projection3D.java	/^    public double cos_phi, sin_phi, tan_phi, cos_theta, sin_theta, tan_theta;$/;"	f	class:Projection3D
cos_theta	src/org/math/plot/render/Projection3D.java	/^    public double cos_phi, sin_phi, tan_phi, cos_theta, sin_theta, tan_theta;$/;"	f	class:Projection3D
cosh	src/org/math/plot/utils/FastMath.java	/^    public static double cosh(double value) {$/;"	m	class:FastMath
count	src/utils/statistics/StatisticsCollector.java	/^	private volatile int count=1;$/;"	f	class:StatisticsCollector	file:
currentTime	src/spiking/controllers/node/NodeThread.java	/^	private double currentTime=0.0;$/;"	f	class:NodeThread	file:
currentTime	src/spiking/simulator/SpikingNeuralSimulator.java	/^	private double currentTime=0.0;$/;"	f	class:SpikingNeuralSimulator	file:
cycle_time	src/spiking/simulator/SpikingNeuralSimulator.java	/^	private double cycle_time;$/;"	f	class:SpikingNeuralSimulator	file:
d	src/org/math/io/littleendian/LEDataInputStream.java	/^    protected DataInputStream d;$/;"	f	class:LEDataInputStream
d	src/org/math/io/littleendian/LEDataOutputStream.java	/^    protected DataOutputStream d;$/;"	f	class:LEDataOutputStream
d4Test	src/spiking/simulator/SpikingNeuralSimulator.java	/^	public static final Double d4Test = 0.04;$/;"	f	class:SpikingNeuralSimulator
darkLabel	src/org/math/plot/plotObjects/Axis.java	/^	protected BaseLabel darkLabel;$/;"	f	class:Axis
darkLabelAngle	src/org/math/plot/plotObjects/Axis.java	/^	protected double darkLabelAngle = 0;$/;"	f	class:Axis
darkLabelFont	src/org/math/plot/plotObjects/Axis.java	/^	protected Font darkLabelFont = AbstractDrawer.DEFAULT_FONT;$/;"	f	class:Axis
darkLabel_base_position	src/org/math/plot/plotObjects/Axis.java	/^	protected double[] darkLabel_base_position;$/;"	f	class:Axis
darkLine	src/org/math/plot/plotObjects/Axis.java	/^	protected BaseLine darkLine;$/;"	f	class:Axis
data	src/utils/plotter/FastScatterPlotter.java	/^	private float [][]data;$/;"	f	class:FastScatterPlotter	file:
dataFrame	src/org/math/plot/canvas/PlotCanvas.java	/^    DataFrame dataFrame = new DataFrame(this);$/;"	f	class:PlotCanvas
dataPanel	src/org/math/plot/components/DataToolBar.java	/^	private DataPanel dataPanel;$/;"	f	class:DataToolBar	file:
dataUpdated	src/org/math/plot/DataSelectPanel.java	/^    boolean dataUpdated = false;$/;"	f	class:DataSelectPanel
dataUpdated	src/org/math/plot/DataSelectTable.java	/^	boolean dataUpdated = false;$/;"	f	class:DataSelectTable
datapanel	src/org/math/plot/plots/Plot.java	/^    public DataPanel datapanel = null;$/;"	f	class:Plot
debActiveprintln	src/spiking/controllers/node/NodeThread.java	/^	private void debActiveprintln(String s){$/;"	m	class:NodeThread	file:
debNum	src/spiking/controllers/node/NodeThread.java	/^	private int debNum=28;$/;"	f	class:NodeThread	file:
debNum	src/spiking/simulator/SpikingNeuralSimulator.java	/^	private int debNum=27;$/;"	f	class:SpikingNeuralSimulator	file:
debprintln	src/spiking/controllers/node/NodeThread.java	/^	private void debprintln(String s){$/;"	m	class:NodeThread	file:
debprintln	src/spiking/node/NodesManager.java	/^	private void debprintln(String s){$/;"	m	class:NodesManager	file:
debprintln	src/spiking/node/NodesManager.java~	/^	private void debprintln(String s){$/;"	m	class:NodesManager	file:
debprintln	src/spiking/node/neuron/NodeNeuronsManager.java	/^	private void debprintln(String s){$/;"	m	class:NodeNeuronsManager	file:
debprintln	src/spiking/simulator/SpikingNeuralSimulator.java	/^	private void debprintln(String s){$/;"	m	class:SpikingNeuralSimulator	file:
debug	src/spiking/controllers/node/NodeThread.java	/^	private Boolean debug = false;$/;"	f	class:NodeThread	file:
debug	src/spiking/node/NodesManager.java	/^	private Boolean debug = false;$/;"	f	class:NodesManager	file:
debug	src/spiking/node/NodesManager.java~	/^	private Boolean debug = false;$/;"	f	class:NodesManager	file:
debug	src/spiking/node/neuron/NodeNeuronsManager.java	/^	private Boolean debug = false;$/;"	f	class:NodeNeuronsManager	file:
debug	src/spiking/simulator/SpikingNeuralSimulator.java	/^	private Boolean debug = false;$/;"	f	class:SpikingNeuralSimulator	file:
debugCases	src/spiking/simulator/SpikingNeuralSimulator.java	/^	private int [] debugCases = new int[debNum];$/;"	f	class:SpikingNeuralSimulator	file:
debugMaxWPDiff	src/spiking/controllers/node/NodeThread.java	/^	private Double debugMaxWPDiff=0.0;$/;"	f	class:NodeThread	file:
debug_level	src/spiking/controllers/node/NodeThread.java	/^	private int debug_level = 3;$/;"	f	class:NodeThread	file:
defFileName	src/utils/statistics/StatisticsCollector.java	/^	private String defFileName=null;$/;"	f	class:StatisticsCollector	file:
defaultColumnDelimiter	src/org/math/io/parser/ArrayString.java	/^    public static String defaultColumnDelimiter = " ";$/;"	f	class:ArrayString
defaultRowDelimiter	src/org/math/io/parser/ArrayString.java	/^    public static String defaultRowDelimiter = "\\n";$/;"	f	class:ArrayString
defaultSize	src/org/math/plot/ParametersPanel.java	/^	private Dimension defaultSize;$/;"	f	class:ParametersPanel	file:
delete	src/org/math/plot/utils/Array.java	/^    public static double[] delete(double[] x, int... J) {$/;"	m	class:Array
delete	src/utils/tools/NiceQueue.java	/^    public void delete(Long fn){$/;"	m	class:NiceQueue
deleteColumns	src/org/math/plot/utils/Array.java	/^    public static double[][] deleteColumns(double[][] x, int... J) {$/;"	m	class:Array
deleteColumnsRange	src/org/math/plot/utils/Array.java	/^    public static double[][] deleteColumnsRange(double[][] x, int J1, int J2) {$/;"	m	class:Array
deleteRange	src/org/math/plot/utils/Array.java	/^    public static double[] deleteRange(double[] x, int J1, int J2) {$/;"	m	class:Array
deleteRows	src/org/math/plot/utils/Array.java	/^    public static double[][] deleteRows(double[][] x, int... I) {$/;"	m	class:Array
deleteRowsRange	src/org/math/plot/utils/Array.java	/^    public static double[][] deleteRowsRange(double[][] x, int I1, int I2) {$/;"	m	class:Array
deliverInterNodeSpike	src/spiking/node/NodesManager.java	/^	private void deliverInterNodeSpike(InterNodeSpike irs){$/;"	m	class:NodesManager	file:
deliverInterNodeSpike	src/spiking/node/NodesManager.java~	/^	private void deliverInterNodeSpike(InterNodeSpike irs){$/;"	m	class:NodesManager	file:
dendriteNeuronId	src/spiking/node/Synapse.java	/^	private Long dendriteNeuronId;$/;"	f	class:Synapse	file:
dendriteRegionId	src/spiking/node/Synapse.java	/^	private Integer dendriteRegionId;$/;"	f	class:Synapse	file:
denySaveSecurity	src/org/math/plot/components/DataToolBar.java	/^	private boolean denySaveSecurity;$/;"	f	class:DataToolBar	file:
denySaveSecurity	src/org/math/plot/components/PlotToolBar.java	/^    private boolean denySaveSecurity;$/;"	f	class:PlotToolBar	file:
destinationRegionId	src/utils/configuration/RegionInterconnectionCfg.java	/^	private Integer destinationRegionId;$/;"	f	class:RegionInterconnectionCfg	file:
dframe	src/org/math/plot/components/DatasFrame.java	/^		DatasFrame dframe;$/;"	f	class:DatasFrame.DataPanel
dilate	src/org/math/plot/render/AWTDrawer.java	/^    public void dilate(int[] screenOrigin, double[] screenRatio) {$/;"	m	class:AWTDrawer
dilate	src/org/math/plot/render/AWTDrawer3D.java	/^    public void dilate(int[] screenOrigin, double[] screenRatio) {$/;"	m	class:AWTDrawer3D
dilate	src/org/math/plot/render/AbstractDrawer.java	/^    public abstract void dilate(int[] screenOrigin, double[] screenRatio);$/;"	m	class:AbstractDrawer
dilate	src/org/math/plot/render/Projection.java	/^    public void dilate(int[] screenOrigin, double[] screenRatio) {$/;"	m	class:Projection
dimension	src/org/math/plot/DataPanel.java	/^    public static int[] dimension = new int[]{400, 400};$/;"	f	class:DataPanel
dimension	src/org/math/plot/plotObjects/Base.java	/^	public int dimension;$/;"	f	class:Base
dir	src/utils/experiment/Experiment.java	/^	private static String dir="\/output\/";$/;"	f	class:Experiment	file:
displayDataFrame	src/org/math/plot/canvas/PlotCanvas.java	/^    public void displayDataFrame() {$/;"	m	class:PlotCanvas
displayDataFrame	src/org/math/plot/canvas/PlotCanvas.java	/^    public void displayDataFrame(int i) {$/;"	m	class:PlotCanvas
displayScalesFrame	src/org/math/plot/canvas/PlotCanvas.java	/^    public void displayScalesFrame() {$/;"	m	class:PlotCanvas
do_fast	src/spiking/controllers/node/NodeThread.java	/^	private Boolean do_fast;$/;"	f	class:NodeThread	file:
dontUseMe_isInNonEmptyRange_	src/org/math/plot/utils/NumbersUtils.java	/^    private static boolean dontUseMe_isInNonEmptyRange_(int min, int max, int a) {$/;"	m	class:NumbersUtils	file:
dot_pattern	src/org/math/plot/render/AbstractDrawer.java	/^    protected boolean[][] dot_pattern = DOT_TRIANGLE_PATTERN;$/;"	f	class:AbstractDrawer
dot_radius	src/org/math/plot/render/AbstractDrawer.java	/^    protected int dot_radius = DEFAULT_DOT_RADIUS;$/;"	f	class:AbstractDrawer
dot_type	src/org/math/plot/render/AbstractDrawer.java	/^    protected int dot_type = ROUND_DOT;$/;"	f	class:AbstractDrawer
dragging	src/org/math/plot/canvas/PlotCanvas.java	/^    protected boolean dragging = false;$/;"	f	class:PlotCanvas
draw	src/org/math/plot/ParametersPanel.java	/^	private void draw() {$/;"	m	class:ParametersPanel	file:
draw	src/org/math/plot/canvas/PlotCanvas.java	/^    protected AbstractDrawer draw;$/;"	f	class:PlotCanvas
draw	src/org/math/plot/render/Projection.java	/^    protected AWTDrawer draw;$/;"	f	class:Projection
drawCoordinate	src/org/math/plot/render/AbstractDrawer.java	/^    public void drawCoordinate(double... pC) {$/;"	m	class:AbstractDrawer
drawCrossDot	src/org/math/plot/render/AWTDrawer.java	/^    public void drawCrossDot(double... pC) {$/;"	m	class:AWTDrawer
drawCrossDot	src/org/math/plot/render/AbstractDrawer.java	/^    public abstract void drawCrossDot(double... pC);$/;"	m	class:AbstractDrawer
drawDot	src/org/math/plot/render/AbstractDrawer.java	/^    public void drawDot(double... pC) {$/;"	m	class:AbstractDrawer
drawImage	src/org/math/plot/render/AWTDrawer.java	/^    public void drawImage(Image img, float alpha, double[] _xyzSW, double[] _xyzSE, double[] _xyzNW) {$/;"	m	class:AWTDrawer
drawImage	src/org/math/plot/render/AbstractDrawer.java	/^    public abstract void drawImage(Image img, float alpha, double[] _xyzSW, double[] _xyzSE, double[] _xyzNW);$/;"	m	class:AbstractDrawer
drawLine	src/org/math/plot/render/AWTDrawer.java	/^    private void drawLine(int[]... c) {$/;"	m	class:AWTDrawer	file:
drawLine	src/org/math/plot/render/AWTDrawer.java	/^    public void drawLine(double[]... pC) {$/;"	m	class:AWTDrawer
drawLine	src/org/math/plot/render/AbstractDrawer.java	/^    public abstract void drawLine(double[]... pC);$/;"	m	class:AbstractDrawer
drawLineBase	src/org/math/plot/render/AWTDrawer.java	/^    public void drawLineBase(double[]... rC) {$/;"	m	class:AWTDrawer
drawLineBase	src/org/math/plot/render/AbstractDrawer.java	/^    public abstract void drawLineBase(double[]... rC);$/;"	m	class:AbstractDrawer
drawPatternDot	src/org/math/plot/render/AWTDrawer.java	/^    public void drawPatternDot(double... pC) {$/;"	m	class:AWTDrawer
drawPatternDot	src/org/math/plot/render/AbstractDrawer.java	/^    public abstract void drawPatternDot(double... pC);$/;"	m	class:AbstractDrawer
drawPolygon	src/org/math/plot/render/AWTDrawer.java	/^    public void drawPolygon(double[]... pC) {$/;"	m	class:AWTDrawer
drawPolygon	src/org/math/plot/render/AbstractDrawer.java	/^    public abstract void drawPolygon(double[]... pC);$/;"	m	class:AbstractDrawer
drawRect	src/org/math/plot/canvas/PlotCanvas.java	/^    int[] drawRect = null;$/;"	f	class:PlotCanvas
drawRoundDot	src/org/math/plot/render/AWTDrawer.java	/^    public void drawRoundDot(double... pC) {$/;"	m	class:AWTDrawer
drawRoundDot	src/org/math/plot/render/AbstractDrawer.java	/^    public abstract void drawRoundDot(double... pC);$/;"	m	class:AbstractDrawer
drawShadowedText	src/org/math/plot/render/AWTDrawer.java	/^    public void drawShadowedText(String label, float alpha, double... pC) {$/;"	m	class:AWTDrawer
drawShadowedText	src/org/math/plot/render/AbstractDrawer.java	/^    public abstract void drawShadowedText(String label,float alpha, double... pC);$/;"	m	class:AbstractDrawer
drawText	src/org/math/plot/render/AWTDrawer.java	/^    public void drawText(String label, double... pC) {$/;"	m	class:AWTDrawer
drawText	src/org/math/plot/render/AbstractDrawer.java	/^    public abstract void drawText(String label, double... pC);$/;"	m	class:AbstractDrawer
drawTextBase	src/org/math/plot/render/AWTDrawer.java	/^    public void drawTextBase(String label, double... rC) {$/;"	m	class:AWTDrawer
drawTextBase	src/org/math/plot/render/AbstractDrawer.java	/^    public abstract void drawTextBase(String label, double... rC);$/;"	m	class:AbstractDrawer
draw_dot	src/org/math/plot/plots/BarPlot.java	/^	public boolean draw_dot = true;$/;"	f	class:BarPlot
draw_dot	src/org/math/plot/plots/LinePlot.java	/^	public boolean draw_dot = false;$/;"	f	class:LinePlot
draw_lines	src/org/math/plot/plots/GridPlot3D.java	/^    public boolean draw_lines = true;$/;"	f	class:GridPlot3D
dstNeuronId	src/spiking/controllers/node/NodeLink.java	/^	private Integer dstNeuronId;$/;"	f	class:NodeLink	file:
dstNodeId	src/spiking/controllers/node/NodeLink.java	/^	private Integer dstNodeId;$/;"	f	class:NodeLink	file:
duplicate	src/org/math/plot/utils/Array.java	/^    public static String[] duplicate(int m, String c) {$/;"	m	class:Array
duplicate	src/org/math/plot/utils/Array.java	/^    public static int[] duplicate(int m, int c) {$/;"	m	class:Array
edgesNum	src/connectivity/conn_package/PackageReader.java	/^	private Long edgesNum;$/;"	f	class:PackageReader	file:
edit	src/org/math/plot/plotObjects/Axis.java	/^	public void edit(Object plotCanvas) {$/;"	m	class:Axis
edit	src/org/math/plot/plotObjects/Editable.java	/^	public void edit(Object editParent);$/;"	m	interface:Editable
edit	src/org/math/plot/plots/Plot.java	/^    public void edit(Object src) {$/;"	m	class:Plot
editColor	src/org/math/plot/components/LegendPanel.java	/^        public void editColor() {$/;"	m	class:LegendPanel.Legend
editText	src/org/math/plot/components/LegendPanel.java	/^        public void editText() {$/;"	m	class:LegendPanel.Legend
editable	src/org/math/plot/components/ScalesFrame.java	/^    boolean editable = true;$/;"	f	class:ScalesFrame
editnote	src/org/math/plot/plotObjects/Axis.java	/^	public void editnote(AbstractDrawer draw) {$/;"	m	class:Axis
editnote	src/org/math/plot/plotObjects/Editable.java	/^	public void editnote(AbstractDrawer draw);$/;"	m	interface:Editable
editnote	src/org/math/plot/plots/Plot.java	/^    public void editnote(AbstractDrawer draw) {$/;"	m	class:Plot
end	src/org/math/plot/plotObjects/Axis.java	/^	protected double[] end;$/;"	f	class:Axis
epsilon	src/spiking/simulator/SpikingNeuralSimulator.java	/^	private static final Double epsilon = 0.00000001;$/;"	f	class:SpikingNeuralSimulator	file:
equal	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean equal(double a, double b) {$/;"	m	class:NumbersUtils
equal	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean equal(float a, float b) {$/;"	m	class:NumbersUtils
equals	src/org/math/plot/utils/Array.java	/^    public static boolean equals(double[] x, double[] y) {$/;"	m	class:Array
equals	src/spiking/controllers/node/NodeLink.java	/^	public boolean equals(Object obj) {$/;"	m	class:NodeLink
equals	src/spiking/node/Synapse.java	/^	public boolean equals(Object obj) {$/;"	m	class:Synapse
equals	src/utils/tools/CompressedFire.java	/^	public boolean equals(Object obj) {$/;"	m	class:CompressedFire
equals	src/utils/tools/IntegerCouple.java	/^	public boolean equals(Object obj) {$/;"	m	class:IntegerCouple
equals	src/utils/tools/LongCouple.java	/^	public boolean equals(Object obj) {$/;"	m	class:LongCouple
etam	src/spiking/node/Node.java	/^	private Double etam;$/;"	f	class:Node	file:
etam	src/spiking/node/plasticity/AfferentManager.java	/^	private Double etam = 0.05;$/;"	f	class:AfferentManager	file:
etam	src/utils/configuration/NodeCfg.java	/^	private Double etam;$/;"	f	class:NodeCfg	file:
etap	src/spiking/node/Node.java	/^	private Double etap;$/;"	f	class:Node	file:
etap	src/spiking/node/plasticity/AfferentManager.java	/^	private Double etap = 0.01;$/;"	f	class:AfferentManager	file:
etap	src/utils/configuration/NodeCfg.java	/^	private Double etap;$/;"	f	class:NodeCfg	file:
eventQueueCondition	src/utils/statistics/StatisticsCollector.java	/^	private Condition eventQueueCondition = lock.newCondition();$/;"	f	class:StatisticsCollector	file:
excitProportion4Test	src/spiking/simulator/SpikingNeuralSimulator.java	/^	public static final Double excitProportion4Test = 0.8;$/;"	f	class:SpikingNeuralSimulator
excitatory	src/spiking/node/Node.java	/^	private Long excitatory;$/;"	f	class:Node	file:
excitatory	src/spiking/node/NodesManager.java	/^	private Long excitatory=0l;$/;"	f	class:NodesManager	file:
excitatory	src/spiking/node/NodesManager.java~	/^	private Long excitatory=0l;$/;"	f	class:NodesManager	file:
excitatoryPresynapticDefVal	src/spiking/node/neuron/NodeNeuronsManager.java	/^	private Double excitatoryPresynapticDefVal=2.0;$/;"	f	class:NodeNeuronsManager	file:
exp	src/org/math/plot/utils/FastMath.java	/^    public static double exp(double value) {$/;"	m	class:FastMath
expHiInvTab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] expHiInvTab = new double[1-(int)EXP_UNDERFLOW_LIMIT];$/;"	f	class:FastMath	file:
expHiTab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] expHiTab = new double[1+(int)EXP_OVERFLOW_LIMIT];$/;"	f	class:FastMath	file:
expLoNegTab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] expLoNegTab = new double[EXP_LO_TAB_SIZE];$/;"	f	class:FastMath	file:
expLoPosTab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] expLoPosTab = new double[EXP_LO_TAB_SIZE];$/;"	f	class:FastMath	file:
expName	src/utils/experiment/Experiment.java	/^	private static String expName="";$/;"	f	class:Experiment	file:
expQuick	src/org/math/plot/utils/FastMath.java	/^    public static double expQuick(double value) {$/;"	m	class:FastMath
exp_decay	src/spiking/controllers/node/NodeThread.java	/^  private Boolean exp_decay = false;$/;"	f	class:NodeThread	file:
exp_decay	src/utils/configuration/SpikingSimulatorCfg.java	/^    private Boolean exp_decay;$/;"	f	class:SpikingSimulatorCfg	file:
expadjust	src/utils/math/FastMath.java	/^	private static float expadjust[] ;$/;"	f	class:FastMath	file:
expm1	src/org/math/plot/utils/FastMath.java	/^    public static double expm1(double value) {$/;"	m	class:FastMath
ext	src/spiking/node/Node.java	/^	private ExternalInput ext;$/;"	f	class:Node	file:
extInputReset	src/spiking/node/neuron/NodeNeuronsManager.java	/^	public void extInputReset(Long extNeuronId, double currentTime){$/;"	m	class:NodeNeuronsManager
externalAmplitude	src/spiking/node/Node.java	/^	private Double externalAmplitude=ExternalInput.EXTERNAL_AMPLITUDE_DEF_VALUE;$/;"	f	class:Node	file:
externalAmplitude	src/spiking/node/external_inputs/ExternalInput.java	/^	private Double externalAmplitude = EXTERNAL_AMPLITUDE_DEF_VALUE;$/;"	f	class:ExternalInput	file:
externalInputInit	src/spiking/node/Node.java	/^	private void externalInputInit(){$/;"	m	class:Node	file:
externalInputType	src/spiking/node/Node.java	/^	private int externalInputType=-1;$/;"	f	class:Node	file:
externalInputs	src/spiking/node/Node.java	/^	private Integer externalInputs=0;	$/;"	f	class:Node	file:
externalInputs	src/spiking/node/NodesManager.java	/^	private Integer externalInputs=0;$/;"	f	class:NodesManager	file:
externalInputs	src/spiking/node/NodesManager.java~	/^	private Integer externalInputs=0;$/;"	f	class:NodesManager	file:
externalInputs	src/spiking/node/external_inputs/ExternalInput.java	/^	private Integer externalInputs;$/;"	f	class:ExternalInput	file:
externalInputsTimeOffset	src/spiking/node/Node.java	/^	private Double externalInputsTimeOffset;$/;"	f	class:Node	file:
externalInputsTimeOffset	src/spiking/node/external_inputs/ExternalInput.java	/^	private Double externalInputsTimeOffset=0.1;$/;"	f	class:ExternalInput	file:
externalNeurons	src/spiking/simulator/SpikingNeuralSimulator.java	/^	public final static int externalNeurons=10;$/;"	f	class:SpikingNeuralSimulator
externalSourcesPresynapticDefVal	src/spiking/node/neuron/NodeNeuronsManager.java	/^	private Double externalSourcesPresynapticDefVal=1.0;$/;"	f	class:NodeNeuronsManager	file:
externalSpikes	src/spiking/node/external_inputs/ExternalInput.java	/^	private int externalSpikes = 0;$/;"	f	class:ExternalInput	file:
external_inputs_amplitude	src/utils/configuration/NodeCfg.java	/^	private Double external_inputs_amplitude;$/;"	f	class:NodeCfg	file:
external_inputs_fireduration	src/utils/configuration/NodeCfg.java	/^	private Integer external_inputs_fireduration;$/;"	f	class:NodeCfg	file:
external_inputs_firerate	src/utils/configuration/NodeCfg.java	/^	private Double external_inputs_firerate;$/;"	f	class:NodeCfg	file:
external_inputs_number	src/utils/configuration/NodeCfg.java	/^	private Integer external_inputs_number;$/;"	f	class:NodeCfg	file:
external_inputs_time_phase	src/utils/configuration/NodeCfg.java	/^	private Double external_inputs_time_phase;$/;"	f	class:NodeCfg	file:
external_inputs_timestep	src/utils/configuration/NodeCfg.java	/^	private Integer external_inputs_timestep;$/;"	f	class:NodeCfg	file:
external_inputs_type	src/utils/configuration/NodeCfg.java	/^	private Integer external_inputs_type;$/;"	f	class:NodeCfg	file:
extractExternalMinSpikeTime	src/spiking/node/Node.java	/^	public NiceNode extractExternalMinSpikeTime(Long extNeuronGlobalId){$/;"	m	class:Node
extractMin	src/utils/tools/NiceQueue.java	/^    public NiceNode extractMin(){$/;"	m	class:NiceQueue
extractMinSpikeTime	src/spiking/node/external_inputs/ExternalInput.java	/^	public NiceNode extractMinSpikeTime(int extNeuron){$/;"	m	class:ExternalInput
extrem	src/org/math/plot/plotObjects/Line.java	/^	protected double[][] extrem = new double[2][];$/;"	f	class:Line
f	src/org/math/plot/plots/CloudPlot2D.java	/^    float[] f;$/;"	f	class:CloudPlot2D
f	src/org/math/plot/plots/CloudPlot3D.java	/^    float[] f;$/;"	f	class:CloudPlot3D
factor	src/org/math/plot/render/Projection3D.java	/^    public double factor = 1.4;$/;"	f	class:Projection3D
factorWidth	src/org/math/plot/plots/HistogramPlot2D.java	/^    double factorWidth;$/;"	f	class:HistogramPlot2D
fastexp	src/utils/math/FastMath.java	/^	public float fastexp(Double x){$/;"	m	class:FastMath
fastexp	src/utils/math/FastMath.java	/^	public float fastexp(float x){$/;"	m	class:FastMath
fields	src/org/math/plot/ParametersPanel.java	/^	private JComboBox[] fields;$/;"	f	class:ParametersPanel	file:
file	src/org/math/io/files/BinaryFile.java	/^    private File file;$/;"	f	class:BinaryFile	file:
file	src/org/math/io/files/DataFile.java	/^    protected File file;$/;"	f	class:DataFile
fileChooser	src/org/math/plot/components/DataToolBar.java	/^	private JFileChooser fileChooser;$/;"	f	class:DataToolBar	file:
filename	src/utils/statistics/StatisticsCollector.java	/^	private volatile String filename = "";$/;"	f	class:StatisticsCollector	file:
fillPolygon	src/org/math/plot/render/AWTDrawer.java	/^    public void fillPolygon(float alpha, double[]... pC) {$/;"	m	class:AWTDrawer
fillPolygon	src/org/math/plot/render/AbstractDrawer.java	/^    public abstract void fillPolygon(float alpha, double[]... pC);$/;"	m	class:AbstractDrawer
fill_shape	src/org/math/plot/plots/CloudPlot2D.java	/^    boolean fill_shape = true;$/;"	f	class:CloudPlot2D
fill_shape	src/org/math/plot/plots/CloudPlot3D.java	/^    boolean fill_shape = true;$/;"	f	class:CloudPlot3D
fill_shape	src/org/math/plot/plots/GridPlot3D.java	/^    public boolean fill_shape = true;$/;"	f	class:GridPlot3D
fill_shape	src/org/math/plot/plots/HistogramPlot2D.java	/^    boolean fill_shape = true;$/;"	f	class:HistogramPlot2D
fill_shape	src/org/math/plot/plots/HistogramPlot3D.java	/^    boolean fill_shape = true;$/;"	f	class:HistogramPlot3D
findNoLtp	src/spiking/node/plasticity/AfferentManager.java	/^	public Afferent findNoLtp(Synapse syn) {$/;"	m	class:AfferentManager
fireDuration	src/spiking/node/Node.java	/^	private int fireDuration = 1;$/;"	f	class:Node	file:
fireDuration	src/spiking/node/external_inputs/ExternalInput.java	/^	private Integer fireDuration=5; 											\/\/duration in ms$/;"	f	class:ExternalInput	file:
fireRate	src/spiking/node/Node.java	/^	private double fireRate = -1;$/;"	f	class:Node	file:
fireSelectedDataChanged	src/org/math/plot/DataSelectPanel.java	/^    public void fireSelectedDataChanged(String from) {$/;"	m	class:DataSelectPanel
fireSelectedDataChanged	src/org/math/plot/DataSelectTable.java	/^	public void fireSelectedDataChanged(String from) {$/;"	m	class:DataSelectTable
fireTime	src/spiking/internode/InterNodeSpike.java	/^	private Double fireTime;$/;"	f	class:InterNodeSpike	file:
fireTime	src/spiking/node/SpikingSynapse.java	/^	private Double fireTime;$/;"	f	class:SpikingSynapse	file:
fireTime	src/spiking/node/spikes/FixedBurnSpike.java	/^	private Double fireTime;$/;"	f	class:FixedBurnSpike	file:
fireTime	src/utils/statistics/CollectedBurn.java	/^	private Double fireTime;$/;"	f	class:CollectedBurn	file:
fire_ltp	src/spiking/controllers/node/NodeThread.java	/^	private void fire_ltp(Synapse syn, Double fireTime){$/;"	m	class:NodeThread	file:
firingNeuronId	src/spiking/node/FiringNeuron.java	/^	private Long firingNeuronId;$/;"	f	class:FiringNeuron	file:
firingNeuronId	src/utils/statistics/CollectedFire.java	/^	private Long firingNeuronId; $/;"	f	class:CollectedFire	file:
firingNeuronInterRegionSynapses	src/spiking/node/SynapsesManager.java	/^	private HashMap<Long, ArrayList<Synapse>> firingNeuronInterRegionSynapses;$/;"	f	class:SynapsesManager	file:
firingNeuronSynapses	src/spiking/node/SynapsesManager.java	/^	private HashMap<Long, ArrayList<Synapse>> firingNeuronSynapses;$/;"	f	class:SynapsesManager	file:
firingNeurons	src/utils/statistics/StatisticsCollector.java	/^	private volatile ArrayList<Double> firingNeurons= new ArrayList<Double>();$/;"	f	class:StatisticsCollector	file:
firingRate	src/spiking/node/external_inputs/ExternalInput.java	/^	private Double firingRate=0.1;												\/\/firing rate	$/;"	f	class:ExternalInput	file:
firingRegionId	src/spiking/node/FiringNeuron.java	/^	private Integer firingRegionId;$/;"	f	class:FiringNeuron	file:
firingRegionId	src/utils/statistics/CollectedFire.java	/^	private Integer firingRegionId; $/;"	f	class:CollectedFire	file:
firingSpikesCounter	src/utils/statistics/StatisticsCollector.java	/^	private volatile long firingSpikesCounter=0l;$/;"	f	class:StatisticsCollector	file:
firingSpikesHashMap	src/utils/statistics/StatisticsCollector.java	/^	private volatile HashMap<Long, FiringNeuron>firingSpikesHashMap = new HashMap<Long, FiringNeuron>();$/;"	f	class:StatisticsCollector	file:
firingTime	src/spiking/node/FiringNeuron.java	/^	private Double firingTime;$/;"	f	class:FiringNeuron	file:
firingTime	src/utils/statistics/CollectedFire.java	/^	private Double firingTime; $/;"	f	class:CollectedFire	file:
firingTimes	src/utils/statistics/StatisticsCollector.java	/^	private volatile ArrayList<Double> firingTimes= new ArrayList<Double>();$/;"	f	class:StatisticsCollector	file:
firstFiringNeurons	src/utils/statistics/StatisticsCollector.java	/^	private volatile ArrayList<Double> firstFiringNeurons= null;$/;"	f	class:StatisticsCollector	file:
firstFiringTimes	src/utils/statistics/StatisticsCollector.java	/^	private volatile ArrayList<Double> firstFiringTimes= null;$/;"	f	class:StatisticsCollector	file:
floor	src/org/math/plot/utils/FastMath.java	/^    public static double floor(double value) {$/;"	m	class:FastMath
floor	src/org/math/plot/utils/FastMath.java	/^    public static float floor(float value) {$/;"	m	class:FastMath
floorPowerOfTwo	src/org/math/plot/utils/NumbersUtils.java	/^    public static int floorPowerOfTwo(int a) {$/;"	m	class:NumbersUtils
floorPowerOfTwo	src/org/math/plot/utils/NumbersUtils.java	/^    public static long floorPowerOfTwo(long a) {$/;"	m	class:NumbersUtils
flush	src/org/math/io/littleendian/LEDataOutputStream.java	/^    public void flush() throws IOException {$/;"	m	class:LEDataOutputStream
fm	src/spiking/controllers/node/NodeThread.java	/^	private FastMath fm = new FastMath();$/;"	f	class:NodeThread	file:
fn	src/utils/tools/NiceNode.java	/^	public Long fn;$/;"	f	class:NiceNode
font	src/org/math/plot/DataSelectPanel.java	/^    public Font font = new Font("Arial", Font.PLAIN, 10);$/;"	f	class:DataSelectPanel
font	src/org/math/plot/PlotPanel.java	/^    private Font font = new Font("Arial", Font.PLAIN, 10);$/;"	f	class:PlotPanel	file:
font	src/org/math/plot/plotObjects/Label.java	/^	public Font font = AbstractDrawer.DEFAULT_FONT;$/;"	f	class:Label
font	src/org/math/plot/render/AbstractDrawer.java	/^    protected Font font = DEFAULT_FONT;$/;"	f	class:AbstractDrawer
frame	src/utils/plotter/ScatterPlotter.java	/^	private JFrame frame;$/;"	f	class:ScatterPlotter	file:
fromExternal	src/spiking/node/Synapse.java	/^	public Boolean fromExternal(){$/;"	m	class:Synapse
fromExternalInput	src/spiking/node/Synapse.java	/^	private Boolean fromExternalInput=false;$/;"	f	class:Synapse	file:
fromExternalInput	src/spiking/node/Synapse.java	/^	public Boolean fromExternalInput() {$/;"	m	class:Synapse
fromExternalInputInteger	src/spiking/node/Synapse.java	/^	public Integer fromExternalInputInteger() {$/;"	m	class:Synapse
fromExternalNode	src/spiking/node/Synapse.java	/^	private Boolean fromExternalNode=false;$/;"	f	class:Synapse	file:
fromExternalNode	src/spiking/node/Synapse.java	/^	public Boolean fromExternalNode(){$/;"	m	class:Synapse
fromExternalSource	src/spiking/node/SpikingSynapse.java	/^	private Boolean fromExternalSource;$/;"	f	class:SpikingSynapse	file:
fromExternalSource	src/utils/statistics/CollectedBurn.java	/^	private Boolean fromExternalSource; $/;"	f	class:CollectedBurn	file:
fromState	src/spiking/node/SpikingSynapse.java	/^	private Double fromState;$/;"	f	class:SpikingSynapse	file:
fromState	src/utils/statistics/CollectedBurn.java	/^	private Double fromState; $/;"	f	class:CollectedBurn	file:
gausspdf_sigma	src/org/math/plot/plots/GaussianDensityLayerPlot.java	/^	private float[][] gausspdf_sigma;$/;"	f	class:GaussianDensityLayerPlot	file:
gd	src/spiking/node/SynapsesManager.java	/^	private GammaDistribution gd; $/;"	f	class:SynapsesManager	file:
getA	src/utils/tools/IntegerCouple.java	/^	public Integer getA(){$/;"	m	class:IntegerCouple
getA	src/utils/tools/LongCouple.java	/^	public Long getA(){$/;"	m	class:LongCouple
getActiveNeuronsNum	src/spiking/node/neuron/NodeNeuronsManager.java	/^	public int getActiveNeuronsNum(){$/;"	m	class:NodeNeuronsManager
getAdjustBounds	src/org/math/plot/canvas/PlotCanvas.java	/^    public boolean getAdjustBounds() {$/;"	m	class:PlotCanvas
getAffineTransform	src/org/math/plot/render/AWTDrawer.java	/^    public AffineTransform getAffineTransform(int width, int height, double[] _xyzSW, double[] _xyzSE, double[] _xyzNW) {$/;"	m	class:AWTDrawer
getAmplitudeValue	src/spiking/node/Node.java	/^	public Double getAmplitudeValue(Long extNeuronGlobalId, Long bin){$/;"	m	class:Node
getAmplitudeValue	src/spiking/node/external_inputs/ExternalInput.java	/^	public Double getAmplitudeValue(int extNeuron, int bin){$/;"	m	class:ExternalInput
getAvg_neuronal_signal_speed	src/utils/configuration/SpikingSimulatorCfg.java	/^	public Double getAvg_neuronal_signal_speed() {$/;"	m	class:SpikingSimulatorCfg
getAxDelay	src/spiking/node/SynapsesManager.java	/^	public Double getAxDelay(Synapse syn){$/;"	m	class:SynapsesManager
getAxe	src/org/math/plot/plots/DensityLayerPlot.java	/^	public int getAxe() {$/;"	m	class:DensityLayerPlot
getAxe	src/org/math/plot/plots/GaussianDensityLayerPlot.java	/^	public int getAxe() {$/;"	m	class:GaussianDensityLayerPlot
getAxe	src/org/math/plot/plots/QuantileLayerPlot.java	/^	public int getAxe() {$/;"	m	class:QuantileLayerPlot
getAxeScale	src/org/math/plot/plotObjects/Base.java	/^	public String getAxeScale(int i) {$/;"	m	class:Base
getAxesScales	src/org/math/plot/plotObjects/Base.java	/^	public String[] getAxesScales() {$/;"	m	class:Base
getAxis	src/org/math/plot/PlotPanel.java	/^    public Axis getAxis(int i) {$/;"	m	class:PlotPanel
getAxis	src/org/math/plot/plotObjects/BasePlot.java	/^	public Axis getAxis(int i) {$/;"	m	class:BasePlot
getAxis	src/org/math/plot/plotObjects/BasePlot.java	/^	public Axis[] getAxis() {$/;"	m	class:BasePlot
getAxisScales	src/org/math/plot/PlotPanel.java	/^    public String[] getAxisScales() {$/;"	m	class:PlotPanel
getAxisScales	src/org/math/plot/canvas/PlotCanvas.java	/^    public String[] getAxisScales() {$/;"	m	class:PlotCanvas
getAxonNeuronId	src/spiking/node/Synapse.java	/^	public Long getAxonNeuronId() {$/;"	m	class:Synapse
getAxonNodeId	src/spiking/node/Synapse.java	/^	public Integer getAxonNodeId() {$/;"	m	class:Synapse
getAxonalDelay	src/spiking/internode/InterNodeSpike.java	/^	public Double getAxonalDelay(){$/;"	m	class:InterNodeSpike
getB	src/utils/tools/IntegerCouple.java	/^	public Integer getB(){$/;"	m	class:IntegerCouple
getB	src/utils/tools/LongCouple.java	/^	public Long getB(){$/;"	m	class:LongCouple
getBaseOffset	src/org/math/plot/render/AbstractDrawer.java	/^    public double[] getBaseOffset() {$/;"	m	class:AbstractDrawer
getBn	src/spiking/node/Node.java	/^	public Integer getBn() {$/;"	m	class:Node
getBn	src/utils/configuration/NodeCfg.java	/^	public Integer getBn() {$/;"	m	class:NodeCfg
getBounds	src/org/math/plot/plots/BoxPlot2D.java	/^    public double[][] getBounds() {$/;"	m	class:BoxPlot2D
getBounds	src/org/math/plot/plots/BoxPlot3D.java	/^    public double[][] getBounds() {$/;"	m	class:BoxPlot3D
getBounds	src/org/math/plot/plots/CloudPlot2D.java	/^    public double[][] getBounds() {$/;"	m	class:CloudPlot2D
getBounds	src/org/math/plot/plots/CloudPlot3D.java	/^    public double[][] getBounds() {$/;"	m	class:CloudPlot3D
getBounds	src/org/math/plot/plots/GridPlot3D.java	/^    public double[][] getBounds() {$/;"	m	class:GridPlot3D
getBounds	src/org/math/plot/plots/HistogramPlot2D.java	/^    public double[][] getBounds() {$/;"	m	class:HistogramPlot2D
getBounds	src/org/math/plot/plots/HistogramPlot3D.java	/^    public double[][] getBounds() {$/;"	m	class:HistogramPlot3D
getBounds	src/org/math/plot/plots/LayerPlot.java	/^    public double[][] getBounds() {$/;"	m	class:LayerPlot
getBounds	src/org/math/plot/plots/Plot.java	/^    public double[] getBounds(int axis) {$/;"	m	class:Plot
getBounds	src/org/math/plot/plots/Plot.java	/^    public double[][] getBounds() {$/;"	m	class:Plot
getBounds	src/org/math/plot/plots/ScatterPlot.java	/^    public double[][] getBounds() {$/;"	m	class:ScatterPlot
getBurnTime	src/spiking/internode/InterNodeSpike.java	/^	public Double getBurnTime() {$/;"	m	class:InterNodeSpike
getBurnTime	src/spiking/node/SpikingSynapse.java	/^	public Double getBurnTime() {$/;"	m	class:SpikingSynapse
getBurnTime	src/spiking/node/spikes/FixedBurnSpike.java	/^	public Double getBurnTime() {$/;"	m	class:FixedBurnSpike
getBurnTime	src/utils/statistics/CollectedBurn.java	/^	public Double getBurnTime() {$/;"	m	class:CollectedBurn
getBurning	src/spiking/node/Synapse.java	/^	public Long getBurning(){$/;"	m	class:Synapse
getBurning	src/utils/tools/IntegerCouple.java	/^	public Integer getBurning(){$/;"	m	class:IntegerCouple
getBurning	src/utils/tools/LongCouple.java	/^	public Long getBurning(){$/;"	m	class:LongCouple
getBurningNeuron	src/spiking/node/plasticity/Afferent.java	/^	public Long getBurningNeuron(){$/;"	m	class:Afferent
getBurningNeuronConnections	src/spiking/node/SynapsesManager.java	/^	public ArrayList<Synapse> getBurningNeuronConnections(Long burningNeuronId){$/;"	m	class:SynapsesManager
getBurningNeuronId	src/spiking/node/neuron/BurningNeuron.java	/^	public Long getBurningNeuronId() {$/;"	m	class:BurningNeuron
getBurningNeuronInterNodeConnections	src/spiking/node/SynapsesManager.java	/^	public ArrayList<Synapse> getBurningNeuronInterNodeConnections(Long burningNeuronId){$/;"	m	class:SynapsesManager
getBurningRegionId	src/spiking/node/neuron/BurningNeuron.java	/^	public Integer getBurningRegionId() {$/;"	m	class:BurningNeuron
getC	src/utils/configuration/NeuManCfg.java	/^	public Double getC() {$/;"	m	class:NeuManCfg
getColor	src/org/math/plot/plotObjects/Axis.java	/^	public Color getColor() {$/;"	m	class:Axis
getColor	src/org/math/plot/plotObjects/BasePlot.java	/^	public Color getColor() {$/;"	m	class:BasePlot
getColor	src/org/math/plot/plotObjects/Label.java	/^	public Color getColor() {$/;"	m	class:Label
getColor	src/org/math/plot/plotObjects/Line.java	/^	public Color getColor() {$/;"	m	class:Line
getColor	src/org/math/plot/plotObjects/PaintImage.java	/^    public Color getColor() {$/;"	m	class:PaintImage
getColor	src/org/math/plot/plotObjects/Plotable.java	/^	public Color getColor();$/;"	m	interface:Plotable
getColor	src/org/math/plot/plotObjects/RasterImage.java	/^	public Color getColor() {$/;"	m	class:RasterImage
getColor	src/org/math/plot/plots/Plot.java	/^    public Color getColor() {$/;"	m	class:Plot
getColor	src/org/math/plot/render/AWTDrawer.java	/^    public Color getColor() {$/;"	m	class:AWTDrawer
getColor	src/org/math/plot/render/AbstractDrawer.java	/^    public Color getColor() {$/;"	m	class:AbstractDrawer
getColumn	src/org/math/plot/DataSelectPanel.java	/^    static Object[] getColumn(int j, Object[][] mat) {$/;"	m	class:DataSelectPanel
getColumn	src/org/math/plot/DataSelectTable.java	/^	static Object[] getColumn(int j, Object[][] mat) {$/;"	m	class:DataSelectTable
getColumnClass	src/org/math/plot/DataSelectTable.java	/^		public Class< ? > getColumnClass(int columnIndex) {$/;"	m	class:DataSelectTable.Model
getColumnCopy	src/org/math/plot/utils/Array.java	/^    public static double[] getColumnCopy(double[][] M, int j) {$/;"	m	class:Array
getColumnCopy	src/org/math/plot/utils/Array.java	/^    public static double[] getColumnCopy(double[][][] M, int j, int k) {$/;"	m	class:Array
getColumnCount	src/org/math/plot/DataSelectTable.java	/^		public int getColumnCount() {$/;"	m	class:DataSelectTable.Model
getColumnDimension	src/org/math/plot/utils/Array.java	/^    public static int getColumnDimension(double[][] M, int i) {$/;"	m	class:Array
getColumnName	src/org/math/plot/DataSelectTable.java	/^		public String getColumnName(int columnIndex) {$/;"	m	class:DataSelectTable.Model
getColumnsCopy	src/org/math/plot/utils/Array.java	/^    public static double[][] getColumnsCopy(double[][] M, int... J) {$/;"	m	class:Array
getColumnsRangeCopy	src/org/math/plot/utils/Array.java	/^    public static double[][] getColumnsRangeCopy(double[][] M, int j1, int j2) {$/;"	m	class:Array
getCompressedFireTime	src/utils/tools/CompressedFire.java	/^	public Double getCompressedFireTime() {$/;"	m	class:CompressedFire
getCompressedNeuronId	src/utils/tools/CompressedFire.java	/^	public Integer getCompressedNeuronId() {$/;"	m	class:CompressedFire
getCompressionFactor	src/spiking/node/NodesManager.java	/^	public double getCompressionFactor() {$/;"	m	class:NodesManager
getCompressionFactor	src/spiking/node/NodesManager.java~	/^	public double getCompressionFactor() {$/;"	m	class:NodesManager
getCompressionFactor	src/utils/statistics/CollectedFire.java	/^	public Double getCompressionFactor() {$/;"	m	class:CollectedFire
getConnection	src/utils/configuration/SpikingSimulatorCfg.java	/^	public ArrayList<RegionInterconnectionCfg> getConnection() {$/;"	m	class:SpikingSimulatorCfg
getConnectionPresynapticWeight	src/spiking/node/Node.java	/^	public Double getConnectionPresynapticWeight(Long firingNeuronId, Long burningNeuronId){$/;"	m	class:Node
getConnection_probability	src/utils/configuration/RegionInterconnectionCfg.java	/^	public Double getConnection_probability() {$/;"	m	class:RegionInterconnectionCfg
getConnections	src/utils/configuration/SpikingSimulatorCfg.java	/^	public ArrayList<RegionInterconnectionCfg> getConnections() {$/;"	m	class:SpikingSimulatorCfg
getCoords	src/org/math/plot/plotObjects/Base.java	/^	public double[][] getCoords() {$/;"	m	class:Base
getCopy	src/org/math/plot/utils/Array.java	/^    public static double[] getCopy(double[] M, int... I) {$/;"	m	class:Array
getCurrentTime	src/spiking/controllers/node/NodeThread.java	/^	public double getCurrentTime() {$/;"	m	class:NodeThread
getD	src/utils/configuration/NeuManCfg.java	/^	public Double getD() {$/;"	m	class:NeuManCfg
getData	src/org/math/plot/plots/BoxPlot2D.java	/^    public double[][] getData() {$/;"	m	class:BoxPlot2D
getData	src/org/math/plot/plots/BoxPlot3D.java	/^    public double[][] getData() {$/;"	m	class:BoxPlot3D
getData	src/org/math/plot/plots/CloudPlot2D.java	/^    public double[][] getData() {$/;"	m	class:CloudPlot2D
getData	src/org/math/plot/plots/CloudPlot3D.java	/^    public double[][] getData() {$/;"	m	class:CloudPlot3D
getData	src/org/math/plot/plots/DensityLayerPlot.java	/^	public double[][] getData() {$/;"	m	class:DensityLayerPlot
getData	src/org/math/plot/plots/GaussianDensityLayerPlot.java	/^	public double[][] getData() {$/;"	m	class:GaussianDensityLayerPlot
getData	src/org/math/plot/plots/GridPlot3D.java	/^    public double[][] getData() {$/;"	m	class:GridPlot3D
getData	src/org/math/plot/plots/HistogramPlot2D.java	/^    public double[][] getData() {$/;"	m	class:HistogramPlot2D
getData	src/org/math/plot/plots/HistogramPlot3D.java	/^    public double[][] getData() {$/;"	m	class:HistogramPlot3D
getData	src/org/math/plot/plots/Plot.java	/^    public abstract double[][] getData();$/;"	m	class:Plot
getData	src/org/math/plot/plots/QuantileLayerPlot.java	/^	public double[][] getData() {$/;"	m	class:QuantileLayerPlot
getData	src/org/math/plot/plots/ScatterPlot.java	/^    public double[][] getData() {$/;"	m	class:ScatterPlot
getData	src/org/math/plot/plots/VectorLayerPlot.java	/^	public double[][] getData() {$/;"	m	class:VectorLayerPlot
getDataPanel	src/org/math/plot/plots/LayerPlot.java	/^    public DataPanel getDataPanel(PlotCanvas plotCanvas) {$/;"	m	class:LayerPlot
getDataPanel	src/org/math/plot/plots/Plot.java	/^    public DataPanel getDataPanel(PlotCanvas plotCanvas) {$/;"	m	class:Plot
getDataWidth	src/org/math/plot/plots/BoxPlot2D.java	/^    public double[][] getDataWidth() {$/;"	m	class:BoxPlot2D
getDataWidth	src/org/math/plot/plots/BoxPlot3D.java	/^    public double[][] getDataWidth() {$/;"	m	class:BoxPlot3D
getDataWidth	src/org/math/plot/plots/HistogramPlot2D.java	/^    public double[] getDataWidth() {$/;"	m	class:HistogramPlot2D
getDataWidth	src/org/math/plot/plots/HistogramPlot3D.java	/^    public double[][] getDataWidth() {$/;"	m	class:HistogramPlot3D
getDataX	src/org/math/plot/plots/GridPlot3D.java	/^    public double[] getDataX() {$/;"	m	class:GridPlot3D
getDataY	src/org/math/plot/plots/GridPlot3D.java	/^    public double[] getDataY() {$/;"	m	class:GridPlot3D
getDataZ	src/org/math/plot/plots/GridPlot3D.java	/^    public double[][] getDataZ() {$/;"	m	class:GridPlot3D
getDendriteNeuronId	src/spiking/node/Synapse.java	/^	public Long getDendriteNeuronId() {$/;"	m	class:Synapse
getDendriteNodeId	src/spiking/node/Synapse.java	/^	public Integer getDendriteNodeId() {$/;"	m	class:Synapse
getDotPattern	src/org/math/plot/render/AbstractDrawer.java	/^    public boolean[][] getDotPattern() {$/;"	m	class:AbstractDrawer
getDotRadius	src/org/math/plot/render/AbstractDrawer.java	/^    public int getDotRadius() {$/;"	m	class:AbstractDrawer
getDotType	src/org/math/plot/render/AbstractDrawer.java	/^    public int getDotType() {$/;"	m	class:AbstractDrawer
getDst	src/utils/tools/IntegerCouple.java	/^	public Integer getDst(){$/;"	m	class:IntegerCouple
getDst	src/utils/tools/LongCouple.java	/^	public Long getDst(){$/;"	m	class:LongCouple
getDstNeuronId	src/spiking/controllers/node/NodeLink.java	/^	public Integer getDstNeuronId() {$/;"	m	class:NodeLink
getDstNodeId	src/spiking/controllers/node/NodeLink.java	/^	public Integer getDstNodeId() {$/;"	m	class:NodeLink
getDstRegionId	src/utils/configuration/RegionInterconnectionCfg.java	/^	public Integer getDstRegionId() {$/;"	m	class:RegionInterconnectionCfg
getEdgesNum	src/connectivity/nodes/ConnectivityPackageManager.java	/^	public Integer getEdgesNum() {$/;"	m	class:ConnectivityPackageManager
getEditable	src/org/math/plot/PlotPanel.java	/^    public boolean getEditable() {$/;"	m	class:PlotPanel
getEditable	src/org/math/plot/canvas/PlotCanvas.java	/^    public boolean getEditable() {$/;"	m	class:PlotCanvas
getEtam	src/spiking/node/Node.java	/^	public Double getEtam() {$/;"	m	class:Node
getEtam	src/spiking/node/plasticity/AfferentManager.java	/^	public Double getEtam() {$/;"	m	class:AfferentManager
getEtam	src/utils/configuration/NodeCfg.java	/^	public Double getEtam() {$/;"	m	class:NodeCfg
getEtap	src/spiking/node/Node.java	/^	public Double getEtap() {$/;"	m	class:Node
getEtap	src/spiking/node/plasticity/AfferentManager.java	/^	public Double getEtap() {$/;"	m	class:AfferentManager
getEtap	src/utils/configuration/NodeCfg.java	/^	public Double getEtap() {$/;"	m	class:NodeCfg
getExc_ampl	src/spiking/node/Node.java	/^	public Double getExc_ampl() {$/;"	m	class:Node
getExcitProportion	src/spiking/node/Node.java	/^	public Double getExcitProportion() {$/;"	m	class:Node
getExcitatory	src/spiking/controllers/node/NodeThread.java	/^	public Long getExcitatory(){$/;"	m	class:NodeThread
getExcitatory	src/spiking/node/Node.java	/^	public Long getExcitatory() {$/;"	m	class:Node
getExcitatoryPresynapticDefVal	src/spiking/node/neuron/NodeNeuronsManager.java	/^	public Double getExcitatoryPresynapticDefVal() {$/;"	m	class:NodeNeuronsManager
getExcitatoryPresynapticWeight	src/spiking/controllers/node/NodeThread.java	/^	public Double getExcitatoryPresynapticWeight() {$/;"	m	class:NodeThread
getExcitatory_inhibitory_ratio	src/utils/configuration/NodeCfg.java	/^	public Double getExcitatory_inhibitory_ratio() {$/;"	m	class:NodeCfg
getExp_decay	src/utils/configuration/SpikingSimulatorCfg.java	/^  public Boolean getExp_decay() {$/;"	m	class:SpikingSimulatorCfg
getExperimentDir	src/utils/experiment/Experiment.java	/^	public static String getExperimentDir() {$/;"	m	class:Experiment
getExperimentName	src/utils/experiment/Experiment.java	/^	public static String getExperimentName() {$/;"	m	class:Experiment
getExponent	src/org/math/plot/utils/FastMath.java	/^    public static int getExponent(double value) {$/;"	m	class:FastMath
getExponent	src/org/math/plot/utils/FastMath.java	/^    public static int getExponent(float value) {$/;"	m	class:FastMath
getExternalAmplitude	src/spiking/node/Node.java	/^	public Double getExternalAmplitude() {$/;"	m	class:Node
getExternalInput	src/spiking/node/Node.java	/^	public ExternalInput getExternalInput() {$/;"	m	class:Node
getExternalInputs	src/spiking/controllers/node/NodeThread.java	/^	public Integer getExternalInputs(){$/;"	m	class:NodeThread
getExternalInputs	src/spiking/node/Node.java	/^	public Integer getExternalInputs() {$/;"	m	class:Node
getExternalInputsNum	src/spiking/node/external_inputs/ExternalInput.java	/^	protected Integer getExternalInputsNum(){$/;"	m	class:ExternalInput
getExternalInputsTimeOffset	src/spiking/node/Node.java	/^	public Double getExternalInputsTimeOffset() {$/;"	m	class:Node
getExternalInputsType	src/spiking/node/Node.java	/^	public int getExternalInputsType(){$/;"	m	class:Node
getExternalSourcesPresynapticDefVal	src/spiking/node/neuron/NodeNeuronsManager.java	/^	public Double getExternalSourcesPresynapticDefVal() {$/;"	m	class:NodeNeuronsManager
getExternalSpikesInQueue	src/spiking/node/external_inputs/ExternalInput.java	/^	public int getExternalSpikesInQueue(){$/;"	m	class:ExternalInput
getExternal_inputs_amplitude	src/utils/configuration/NodeCfg.java	/^	public Double getExternal_inputs_amplitude() {$/;"	m	class:NodeCfg
getExternal_inputs_fireduration	src/utils/configuration/NodeCfg.java	/^	public Integer getExternal_inputs_fireduration() {$/;"	m	class:NodeCfg
getExternal_inputs_firerate	src/utils/configuration/NodeCfg.java	/^	public Double getExternal_inputs_firerate() {$/;"	m	class:NodeCfg
getExternal_inputs_number	src/utils/configuration/NodeCfg.java	/^	public Integer getExternal_inputs_number() {$/;"	m	class:NodeCfg
getExternal_inputs_time_phase	src/utils/configuration/NodeCfg.java	/^	public Double getExternal_inputs_time_phase() {$/;"	m	class:NodeCfg
getExternal_inputs_timestep	src/utils/configuration/NodeCfg.java	/^	public Integer getExternal_inputs_timestep() {$/;"	m	class:NodeCfg
getExternal_inputs_type	src/utils/configuration/NodeCfg.java	/^	public Integer getExternal_inputs_type() {$/;"	m	class:NodeCfg
getFD	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final FileDescriptor getFD() throws IOException {$/;"	m	class:LERandomAccessFile
getFilePointer	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final long getFilePointer() throws IOException {$/;"	m	class:LERandomAccessFile
getFireDuration	src/spiking/node/external_inputs/ExternalInput.java	/^	public Integer getFireDuration(){$/;"	m	class:ExternalInput
getFireTime	src/spiking/internode/InterNodeSpike.java	/^	public Double getFireTime(){$/;"	m	class:InterNodeSpike
getFireTime	src/spiking/node/SpikingSynapse.java	/^	public Double getFireTime() {$/;"	m	class:SpikingSynapse
getFireTime	src/spiking/node/spikes/FixedBurnSpike.java	/^	public Double getFireTime() {$/;"	m	class:FixedBurnSpike
getFireTime	src/utils/statistics/CollectedBurn.java	/^	public Double getFireTime() {$/;"	m	class:CollectedBurn
getFiring	src/spiking/node/Synapse.java	/^	public Long getFiring(){$/;"	m	class:Synapse
getFiring	src/utils/tools/IntegerCouple.java	/^	public Integer getFiring(){$/;"	m	class:IntegerCouple
getFiring	src/utils/tools/LongCouple.java	/^	public Long getFiring(){$/;"	m	class:LongCouple
getFiringNeuronConnections	src/spiking/node/SynapsesManager.java	/^	public ArrayList<Synapse> getFiringNeuronConnections(Long firingNeuronId){$/;"	m	class:SynapsesManager
getFiringNeuronId	src/spiking/node/FiringNeuron.java	/^	public Long getFiringNeuronId() {$/;"	m	class:FiringNeuron
getFiringNeuronId	src/utils/statistics/CollectedFire.java	/^	public Long getFiringNeuronId() {$/;"	m	class:CollectedFire
getFiringNeuronInterNodeConnections	src/spiking/node/SynapsesManager.java	/^	public ArrayList<Synapse> getFiringNeuronInterNodeConnections(Long firingNeuronId){$/;"	m	class:SynapsesManager
getFiringRegionId	src/spiking/node/FiringNeuron.java	/^	public Integer getFiringRegionId() {$/;"	m	class:FiringNeuron
getFiringRegionId	src/utils/statistics/CollectedFire.java	/^	public Integer getFiringRegionId() {$/;"	m	class:CollectedFire
getFiringTime	src/spiking/node/FiringNeuron.java	/^	public Double getFiringTime() {$/;"	m	class:FiringNeuron
getFiringTime	src/utils/statistics/CollectedFire.java	/^	public Double getFiringTime() {$/;"	m	class:CollectedFire
getFont	src/org/math/plot/PlotPanel.java	/^    public Font getFont() {$/;"	m	class:PlotPanel
getFont	src/org/math/plot/plotObjects/Label.java	/^	public Font getFont() {$/;"	m	class:Label
getFont	src/org/math/plot/render/AWTDrawer.java	/^    public Font getFont() {$/;"	m	class:AWTDrawer
getFont	src/org/math/plot/render/AbstractDrawer.java	/^    public Font getFont() {$/;"	m	class:AbstractDrawer
getFromExternalSource	src/utils/statistics/CollectedBurn.java	/^	public Boolean getFromExternalSource() {$/;"	m	class:CollectedBurn
getFromState	src/spiking/node/SpikingSynapse.java	/^	public Double getFromState(){$/;"	m	class:SpikingSynapse
getFromState	src/utils/statistics/CollectedBurn.java	/^	public Double getFromState() {$/;"	m	class:CollectedBurn
getGlob_Bn	src/utils/configuration/SpikingSimulatorCfg.java	/^	public Integer getGlob_Bn() {$/;"	m	class:SpikingSimulatorCfg
getGlob_IBI	src/utils/configuration/SpikingSimulatorCfg.java	/^	public Double getGlob_IBI() {$/;"	m	class:SpikingSimulatorCfg
getGlob_etam	src/utils/configuration/SpikingSimulatorCfg.java	/^	public Double getGlob_etam() {$/;"	m	class:SpikingSimulatorCfg
getGlob_etap	src/utils/configuration/SpikingSimulatorCfg.java	/^	public Double getGlob_etap() {$/;"	m	class:SpikingSimulatorCfg
getGlob_external_inputs_amplitude	src/utils/configuration/SpikingSimulatorCfg.java	/^	public Double getGlob_external_inputs_amplitude() {$/;"	m	class:SpikingSimulatorCfg
getGlob_external_inputs_fireduration	src/utils/configuration/SpikingSimulatorCfg.java	/^	public Integer getGlob_external_inputs_fireduration() {$/;"	m	class:SpikingSimulatorCfg
getGlob_external_inputs_firerate	src/utils/configuration/SpikingSimulatorCfg.java	/^	public Double getGlob_external_inputs_firerate() {$/;"	m	class:SpikingSimulatorCfg
getGlob_external_inputs_number	src/utils/configuration/SpikingSimulatorCfg.java	/^	public Integer getGlob_external_inputs_number() {$/;"	m	class:SpikingSimulatorCfg
getGlob_external_inputs_time_offset	src/utils/configuration/SpikingSimulatorCfg.java	/^	public Double getGlob_external_inputs_time_offset() {$/;"	m	class:SpikingSimulatorCfg
getGlob_external_inputs_timestep	src/utils/configuration/SpikingSimulatorCfg.java	/^	public Integer getGlob_external_inputs_timestep() {$/;"	m	class:SpikingSimulatorCfg
getGlob_external_inputs_type	src/utils/configuration/SpikingSimulatorCfg.java	/^	public Integer getGlob_external_inputs_type() {$/;"	m	class:SpikingSimulatorCfg
getGlob_k	src/utils/configuration/SpikingSimulatorCfg.java	/^	public Integer getGlob_k() {$/;"	m	class:SpikingSimulatorCfg
getGlob_local_n	src/utils/configuration/SpikingSimulatorCfg.java	/^	public Long getGlob_local_n() {$/;"	m	class:SpikingSimulatorCfg
getGlob_mu_w_exc	src/utils/configuration/SpikingSimulatorCfg.java	/^	public Double getGlob_mu_w_exc() {$/;"	m	class:SpikingSimulatorCfg
getGlob_mu_w_inh	src/utils/configuration/SpikingSimulatorCfg.java	/^	public Double getGlob_mu_w_inh() {$/;"	m	class:SpikingSimulatorCfg
getGlob_plasticity	src/utils/configuration/SpikingSimulatorCfg.java	/^	public Boolean getGlob_plasticity() {$/;"	m	class:SpikingSimulatorCfg
getGlob_pw_max	src/utils/configuration/SpikingSimulatorCfg.java	/^	public Double getGlob_pw_max() {$/;"	m	class:SpikingSimulatorCfg
getGlob_rewiring_P	src/utils/configuration/SpikingSimulatorCfg.java	/^	public Double getGlob_rewiring_P() {$/;"	m	class:SpikingSimulatorCfg
getGlob_taum	src/utils/configuration/SpikingSimulatorCfg.java	/^	public Double getGlob_taum() {$/;"	m	class:SpikingSimulatorCfg
getGlob_taup	src/utils/configuration/SpikingSimulatorCfg.java	/^	public Double getGlob_taup() {$/;"	m	class:SpikingSimulatorCfg
getGlob_to	src/utils/configuration/SpikingSimulatorCfg.java	/^	public Double getGlob_to() {$/;"	m	class:SpikingSimulatorCfg
getGlob_w_pre_exc	src/utils/configuration/SpikingSimulatorCfg.java	/^	public Double getGlob_w_pre_exc() {$/;"	m	class:SpikingSimulatorCfg
getGlob_w_pre_inh	src/utils/configuration/SpikingSimulatorCfg.java	/^	public Double getGlob_w_pre_inh() {$/;"	m	class:SpikingSimulatorCfg
getGlobal_neuron_manager	src/utils/configuration/SpikingSimulatorCfg.java	/^	public NeuManCfg getGlobal_neuron_manager() {$/;"	m	class:SpikingSimulatorCfg
getGradientColor	src/org/math/plot/plotObjects/Line.java	/^	public Color getGradientColor() {$/;"	m	class:Line
getGraphics2D	src/org/math/plot/render/AbstractDrawer.java	/^    public Graphics2D getGraphics2D() {$/;"	m	class:AbstractDrawer
getGrid	src/org/math/plot/canvas/PlotCanvas.java	/^    public BasePlot getGrid() {$/;"	m	class:PlotCanvas
getIBI	src/spiking/node/Node.java	/^	public Double getIBI() {$/;"	m	class:Node
getIBI	src/utils/configuration/NodeCfg.java	/^	public Double getIBI() {$/;"	m	class:NodeCfg
getId	src/connectivity/nodes/Node.java	/^	public Integer getId(){$/;"	m	class:Node
getId	src/spiking/node/Node.java	/^	public Integer getId(){$/;"	m	class:Node
getId	src/utils/configuration/NodeCfg.java	/^	public Integer getId() {$/;"	m	class:NodeCfg
getIndex	src/org/math/plot/DataSelectPanel.java	/^            public int getIndex(int i) {$/;"	m	class:DataSelectPanel.ParameterRow.Sorting
getIndex	src/org/math/plot/DataSelectPanel.java	/^            public int[] getIndex() {$/;"	m	class:DataSelectPanel.ParameterRow.Sorting
getInh_ampl	src/spiking/node/Node.java	/^	public Double getInh_ampl() {$/;"	m	class:Node
getInhibithory	src/spiking/controllers/node/NodeThread.java	/^	public Long getInhibithory(){$/;"	m	class:NodeThread
getInhibithory	src/spiking/node/Node.java	/^	public Long getInhibithory() {$/;"	m	class:Node
getInhibithorySynapticDefVal	src/spiking/node/neuron/NodeNeuronsManager.java	/^	public Double getInhibithorySynapticDefVal() {$/;"	m	class:NodeNeuronsManager
getInitialized	src/spiking/node/NodesManager.java	/^	public Boolean getInitialized() {$/;"	m	class:NodesManager
getInitialized	src/spiking/node/NodesManager.java~	/^	public Boolean getInitialized() {$/;"	m	class:NodesManager
getInstantToFire	src/spiking/node/SpikingSynapse.java	/^	public Double getInstantToFire() {$/;"	m	class:SpikingSynapse
getInterNodeConnections	src/connectivity/nodes/ConnectivityPackageManager.java	/^	public ArrayList<NodesInterconnection> getInterNodeConnections() {$/;"	m	class:ConnectivityPackageManager
getInterNodeSpike	src/spiking/internode/InterNodeBurningSpike.java	/^	public InterNodeSpike getInterNodeSpike(){$/;"	m	class:InterNodeBurningSpike
getIsExcitatory	src/utils/statistics/CollectedFire.java	/^	public Boolean getIsExcitatory() {$/;"	m	class:CollectedFire
getIsExternal	src/utils/statistics/CollectedFire.java	/^	public Boolean getIsExternal() {$/;"	m	class:CollectedFire
getIterator	src/spiking/node/Node.java	/^	public Iterator<Entry<LongCouple, Double>> getIterator(){$/;"	m	class:Node
getK	src/spiking/node/Node.java	/^	public Integer getK() {$/;"	m	class:Node
getK	src/utils/configuration/NodeCfg.java	/^	public Integer getK() {$/;"	m	class:NodeCfg
getKeyConnectionIterator	src/spiking/node/Node.java	/^	public Iterator<LongCouple> getKeyConnectionIterator(){$/;"	m	class:Node
getLabel	src/connectivity/nodes/Node.java	/^	public String getLabel() {$/;"	m	class:Node
getLastBurningTime	src/spiking/node/Synapse.java	/^	public Double getLastBurningTime() {$/;"	m	class:Synapse
getLastBurningTime	src/spiking/node/neuron/Neuron.java	/^	public Double getLastBurningTime() {$/;"	m	class:Neuron
getLastBurningTime	src/spiking/node/neuron/NodeNeuronsManager.java	/^	public Double getLastBurningTime(Long neuronId) {$/;"	m	class:NodeNeuronsManager
getLastFireTime	src/spiking/node/plasticity/Afferent.java	/^	public Double getLastFireTime() {$/;"	m	class:Afferent
getLastFiringTime	src/spiking/node/neuron/Neuron.java	/^	public Double getLastFiringTime() {$/;"	m	class:Neuron
getLastFiringTime	src/spiking/node/neuron/NodeNeuronsManager.java	/^	public Double getLastFiringTime(Long neuronId){$/;"	m	class:NodeNeuronsManager
getLegend	src/org/math/plot/plotObjects/Axis.java	/^	public String getLegend() {$/;"	m	class:Axis
getLegend	src/org/math/plot/plotObjects/BasePlot.java	/^	public String getLegend(int i) {$/;"	m	class:BasePlot
getLegend	src/org/math/plot/plotObjects/BasePlot.java	/^	public String[] getLegend() {$/;"	m	class:BasePlot
getLegendCoord	src/org/math/plot/plotObjects/Axis.java	/^	public double[] getLegendCoord() {$/;"	m	class:Axis
getLength	src/spiking/node/NodesInterconnection.java	/^	public Double getLength(){$/;"	m	class:NodesInterconnection
getLength	src/spiking/node/Synapse.java	/^	public Double getLength() {$/;"	m	class:Synapse
getLengthShapeParameter	src/spiking/node/NodesInterconnection.java	/^	public Double getLengthShapeParameter() {$/;"	m	class:NodesInterconnection
getLif	src/utils/configuration/SpikingSimulatorCfg.java	/^  public Boolean getLif(){$/;"	m	class:SpikingSimulatorCfg
getLineWidth	src/org/math/plot/render/AbstractDrawer.java	/^    public int getLineWidth() {$/;"	m	class:AbstractDrawer
getLinearDecayD	src/spiking/node/neuron/NodeNeuronsManager.java	/^	public Double getLinearDecayD(){$/;"	m	class:NodeNeuronsManager
getLtdFlag	src/spiking/node/plasticity/Afferent.java	/^	public Boolean getLtdFlag() {$/;"	m	class:Afferent
getLtpFlag	src/spiking/node/plasticity/Afferent.java	/^	public Boolean getLtpFlag() {$/;"	m	class:Afferent
getMatrix	src/org/math/plot/MatrixTablePanel.java	/^    public Object[][] getMatrix() {$/;"	m	class:MatrixTablePanel
getMaxBounds	src/org/math/plot/plotObjects/Base.java	/^	public double[] getMaxBounds() {$/;"	m	class:Base
getMaxN	src/spiking/node/NodesManager.java	/^	public long getMaxN(){$/;"	m	class:NodesManager
getMaxN	src/spiking/node/NodesManager.java~	/^	public long getMaxN(){$/;"	m	class:NodesManager
getMaxN	src/utils/statistics/CollectedFire.java	/^	public Long getMaxN() {$/;"	m	class:CollectedFire
getMaxNe_xn_ratio	src/connectivity/conn_package/PackageReader.java	/^	public Double getMaxNe_xn_ratio(){$/;"	m	class:PackageReader
getMaxNe_xn_ratio	src/connectivity/nodes/ConnectivityPackageManager.java	/^	public Double getMaxNe_xn_ratio(){$/;"	m	class:ConnectivityPackageManager
getMinAxDelay	src/spiking/node/SynapsesManager.java	/^	public Double getMinAxDelay(){$/;"	m	class:SynapsesManager
getMinBounds	src/org/math/plot/plotObjects/Base.java	/^	public double[] getMinBounds() {$/;"	m	class:Base
getMinFiringTime	src/spiking/node/neuron/NodeNeuronsManager.java	/^	public Double getMinFiringTime(){$/;"	m	class:NodeNeuronsManager
getMinNe_xn_ratio	src/connectivity/conn_package/PackageReader.java	/^	public Double getMinNe_xn_ratio(){$/;"	m	class:PackageReader
getMinNe_xn_ratio	src/connectivity/nodes/ConnectivityPackageManager.java	/^	public Double getMinNe_xn_ratio(){$/;"	m	class:ConnectivityPackageManager
getMinTime	src/utils/tools/NiceQueue.java	/^	public Double getMinTime(){$/;"	m	class:NiceQueue
getMinTractLength	src/spiking/node/NodesManager.java	/^	public Double getMinTractLength(){$/;"	m	class:NodesManager
getMinTractLength	src/spiking/node/NodesManager.java~	/^	public Double getMinTractLength(){$/;"	m	class:NodesManager
getMu_omega	src/spiking/node/NodesInterconnection.java	/^	public Double getMu_omega() {$/;"	m	class:NodesInterconnection
getMu_w_agnostic	src/spiking/node/Node.java	/^	public Double getMu_w_agnostic(Long neuronId) {$/;"	m	class:Node
getMu_w_exc	src/spiking/node/Node.java	/^	public Double getMu_w_exc() {$/;"	m	class:Node
getMu_w_exc	src/utils/configuration/NodeCfg.java	/^	public Double getMu_w_exc() {$/;"	m	class:NodeCfg
getMu_w_inh	src/spiking/node/Node.java	/^	public Double getMu_w_inh() {$/;"	m	class:Node
getMu_w_inh	src/utils/configuration/NodeCfg.java	/^	public Double getMu_w_inh() {$/;"	m	class:NodeCfg
getN	src/spiking/controllers/node/NodeThread.java	/^	public Long getN(){$/;"	m	class:NodeThread
getN	src/spiking/node/Node.java	/^	public Long getN() {$/;"	m	class:Node
getN	src/utils/configuration/NodeCfg.java	/^	public Long getN() {$/;"	m	class:NodeCfg
getName	src/org/math/plot/plots/Plot.java	/^    public String getName() {$/;"	m	class:Plot
getNe_xn_ratio	src/spiking/node/NodesInterconnection.java	/^	public Double getNe_xn_ratio(){$/;"	m	class:NodesInterconnection
getNeuronIntermoduleConnectionIterator	src/spiking/node/SynapsesManager.java	/^	public Iterator <Long> getNeuronIntermoduleConnectionIterator(){$/;"	m	class:SynapsesManager
getNeuron_manager	src/utils/configuration/NodeCfg.java	/^	public NeuManCfg getNeuron_manager(){$/;"	m	class:NodeCfg
getNewColor	src/org/math/plot/PlotPanel.java	/^    protected Color getNewColor() {$/;"	m	class:PlotPanel
getNextFiringNeuron	src/spiking/node/neuron/NodeNeuronsManager.java	/^	public NiceNode getNextFiringNeuron() {$/;"	m	class:NodeNeuronsManager
getNode	src/connectivity/nodes/ConnectivityPackageManager.java	/^	public Node getNode(Integer id){$/;"	m	class:ConnectivityPackageManager
getNodeId	src/spiking/controllers/node/NodeThread.java	/^	public Integer getNodeId(){$/;"	m	class:NodeThread
getNodeThread	src/spiking/node/NodesManager.java	/^	public NodeThread getNodeThread(int index){$/;"	m	class:NodesManager
getNodeThread	src/spiking/node/NodesManager.java~	/^	public NodeThread getNodeThread(int index){$/;"	m	class:NodesManager
getNodeThreadsNum	src/spiking/node/NodesManager.java	/^	public int getNodeThreadsNum(){$/;"	m	class:NodesManager
getNodeThreadsNum	src/spiking/node/NodesManager.java~	/^	public int getNodeThreadsNum(){$/;"	m	class:NodesManager
getNodes	src/utils/configuration/SpikingSimulatorCfg.java	/^	public ArrayList<NodeCfg> getNodes() {$/;"	m	class:SpikingSimulatorCfg
getNodesMap	src/utils/configuration/SpikingSimulatorCfg.java	/^	public HashMap<Integer,NodeCfg> getNodesMap() {$/;"	m	class:SpikingSimulatorCfg
getNodesNum	src/connectivity/nodes/ConnectivityPackageManager.java	/^	public Integer getNodesNum() {$/;"	m	class:ConnectivityPackageManager
getNodesNumMaxMask	src/spiking/simulator/SpikingNeuralSimulator.java	/^	public String getNodesNumMaxMask(){$/;"	m	class:SpikingNeuralSimulator
getNotable	src/org/math/plot/PlotPanel.java	/^    public boolean getNotable() {$/;"	m	class:PlotPanel
getNotable	src/org/math/plot/canvas/PlotCanvas.java	/^    public boolean getNotable() {$/;"	m	class:PlotCanvas
getOldPostSynapticWeight	src/spiking/node/plasticity/Afferent.java	/^	public Double getOldPostSynapticWeight() {$/;"	m	class:Afferent
getPlasticity	src/spiking/node/Node.java	/^	public Boolean getPlasticity(){$/;"	m	class:Node
getPlasticity	src/utils/configuration/NodeCfg.java	/^	public Boolean getPlasticity() {$/;"	m	class:NodeCfg
getPlasticity	src/utils/configuration/SpikingSimulatorCfg.java	/^	public Boolean getPlasticity() {$/;"	m	class:SpikingSimulatorCfg
getPlot	src/org/math/plot/PlotPanel.java	/^    public Plot getPlot(int i) {$/;"	m	class:PlotPanel
getPlot	src/org/math/plot/canvas/PlotCanvas.java	/^    public Plot getPlot(int i) {$/;"	m	class:PlotCanvas
getPlotIndex	src/org/math/plot/PlotPanel.java	/^    public int getPlotIndex(Plot p) {$/;"	m	class:PlotPanel
getPlotIndex	src/org/math/plot/canvas/PlotCanvas.java	/^    public int getPlotIndex(Plot p) {$/;"	m	class:PlotCanvas
getPlotToolBar	src/org/math/plot/PlotPanel.java	/^    public PlotToolBar getPlotToolBar() {$/;"	m	class:PlotPanel
getPlotable	src/org/math/plot/PlotPanel.java	/^    public Plotable getPlotable(int i) {$/;"	m	class:PlotPanel
getPlotable	src/org/math/plot/canvas/PlotCanvas.java	/^    public Plotable getPlotable(int i) {$/;"	m	class:PlotCanvas
getPlotables	src/org/math/plot/PlotPanel.java	/^    public LinkedList<Plotable> getPlotables() {$/;"	m	class:PlotPanel
getPlotables	src/org/math/plot/canvas/PlotCanvas.java	/^    public LinkedList<Plotable> getPlotables() {$/;"	m	class:PlotCanvas
getPlots	src/org/math/plot/PlotPanel.java	/^    public LinkedList<Plot> getPlots() {$/;"	m	class:PlotPanel
getPlots	src/org/math/plot/canvas/PlotCanvas.java	/^    public LinkedList<Plot> getPlots() {$/;"	m	class:PlotCanvas
getPostSynapticWeight	src/spiking/node/SpikingSynapse.java	/^	public Double getPostSynapticWeight() {$/;"	m	class:SpikingSynapse
getPostSynapticWeight	src/spiking/node/Synapse.java	/^	public Double getPostSynapticWeight() {$/;"	m	class:Synapse
getPostsynapticWeight	src/utils/statistics/CollectedBurn.java	/^	public Double getPostsynapticWeight() {$/;"	m	class:CollectedBurn
getPreSynapticWeight	src/spiking/node/Synapse.java	/^	public Double getPreSynapticWeight() {$/;"	m	class:Synapse
getPreSynapticWeight	src/spiking/node/neuron/Neuron.java	/^	public Double getPreSynapticWeight() {$/;"	m	class:Neuron
getPreSynapticWeight	src/spiking/node/neuron/NodeNeuronsManager.java	/^	public Double getPreSynapticWeight(Long neuronId){$/;"	m	class:NodeNeuronsManager
getPrecisionUnit	src/org/math/plot/plotObjects/Base.java	/^	public double[] getPrecisionUnit() {$/;"	m	class:Base
getPresynapticForNeuron	src/spiking/node/Node.java	/^	public Double getPresynapticForNeuron(Long neuronId) {$/;"	m	class:Node
getPresynapticWeight	src/spiking/node/SpikingSynapse.java	/^	public Double getPresynapticWeight() {$/;"	m	class:SpikingSynapse
getPresynapticWeight	src/utils/statistics/CollectedBurn.java	/^	public Double getPresynapticWeight() {$/;"	m	class:CollectedBurn
getPrew	src/spiking/node/Node.java	/^	public Double getPrew() {$/;"	m	class:Node
getPwMax	src/spiking/node/Node.java	/^	public Double getPwMax() {$/;"	m	class:Node
getPwMax	src/spiking/node/plasticity/AfferentManager.java	/^	public Double getPwMax() {$/;"	m	class:AfferentManager
getPw_max	src/utils/configuration/NodeCfg.java	/^	public Double getPw_max() {$/;"	m	class:NodeCfg
getQuantileRate	src/org/math/plot/plots/QuantileLayerPlot.java	/^	public double getQuantileRate() {$/;"	m	class:QuantileLayerPlot
getQuantilesValue	src/org/math/plot/plots/GaussianDensityLayerPlot.java	/^	public double getQuantilesValue(int numCoord) {$/;"	m	class:GaussianDensityLayerPlot
getQuantilesValue	src/org/math/plot/plots/QuantileLayerPlot.java	/^	public double getQuantilesValue(int numCoord) {$/;"	m	class:QuantileLayerPlot
getR	src/utils/configuration/SpikingSimulatorCfg.java	/^	public Double getR() {$/;"	m	class:SpikingSimulatorCfg
getRangeCopy	src/org/math/plot/utils/Array.java	/^    public static double[] getRangeCopy(double[] M, int j1, int j2) {$/;"	m	class:Array
getReducingFactor	src/spiking/simulator/SpikingNeuralSimulator.java	/^	public double getReducingFactor(){$/;"	m	class:SpikingNeuralSimulator
getRegion	src/utils/configuration/SpikingSimulatorCfg.java	/^	public ArrayList<NodeCfg> getRegion() {$/;"	m	class:SpikingSimulatorCfg
getRowCopy	src/org/math/plot/utils/Array.java	/^    public static double[] getRowCopy(double[][] M, int i) {$/;"	m	class:Array
getRowCount	src/org/math/plot/DataSelectTable.java	/^		public int getRowCount() {$/;"	m	class:DataSelectTable.Model
getRowsCopy	src/org/math/plot/utils/Array.java	/^    public static double[][] getRowsCopy(double[][] M, int... I) {$/;"	m	class:Array
getRowsRangeCopy	src/org/math/plot/utils/Array.java	/^    public static double[][] getRowsRangeCopy(double[][] M, int i1, int i2) {$/;"	m	class:Array
getS	src/spiking/node/SpikingSynapse.java	/^	public Synapse getS() {$/;"	m	class:SpikingSynapse
getS	src/utils/statistics/CollectedBurn.java	/^	public Synapse getS() {$/;"	m	class:CollectedBurn
getScreenOffset	src/org/math/plot/render/AbstractDrawer.java	/^    public int[] getScreenOffset() {$/;"	m	class:AbstractDrawer
getSelectedAxisIndex	src/org/math/plot/DataSelectPanel.java	/^    public int[] getSelectedAxisIndex() {$/;"	m	class:DataSelectPanel
getSelectedAxisIndex	src/org/math/plot/DataSelectTable.java	/^	public int[] getSelectedAxisIndex() {$/;"	m	class:DataSelectTable
getSelectedDataIndex	src/org/math/plot/DataSelectPanel.java	/^    public int[] getSelectedDataIndex() {$/;"	m	class:DataSelectPanel
getSelectedDataIndex	src/org/math/plot/DataSelectTable.java	/^	public int[] getSelectedDataIndex() {$/;"	m	class:DataSelectTable
getSelectedFullData	src/org/math/plot/DataSelectPanel.java	/^    public Object[][] getSelectedFullData() {$/;"	m	class:DataSelectPanel
getSelectedFullData	src/org/math/plot/DataSelectTable.java	/^	public Object[][] getSelectedFullData() {$/;"	m	class:DataSelectTable
getSelectedProjectedData	src/org/math/plot/DataSelectPanel.java	/^    public Object[][] getSelectedProjectedData() {$/;"	m	class:DataSelectPanel
getSelectedProjectedData	src/org/math/plot/DataSelectTable.java	/^	public Object[][] getSelectedProjectedData() {$/;"	m	class:DataSelectTable
getSelectedXAxis	src/org/math/plot/DataSelectPanel.java	/^    public String getSelectedXAxis() {$/;"	m	class:DataSelectPanel
getSelectedXAxis	src/org/math/plot/DataSelectTable.java	/^	public String getSelectedXAxis() {$/;"	m	class:DataSelectTable
getSelectedYAxis	src/org/math/plot/DataSelectPanel.java	/^    public String getSelectedYAxis() {$/;"	m	class:DataSelectPanel
getSelectedYAxis	src/org/math/plot/DataSelectTable.java	/^	public String getSelectedYAxis() {$/;"	m	class:DataSelectTable
getSelectedZAxis	src/org/math/plot/DataSelectPanel.java	/^    public String getSelectedZAxis() {$/;"	m	class:DataSelectPanel
getSelectedZAxis	src/org/math/plot/DataSelectTable.java	/^	public String getSelectedZAxis() {$/;"	m	class:DataSelectTable
getSigma_w	src/spiking/node/NodesInterconnection.java	/^	public Double getSigma_w(){$/;"	m	class:NodesInterconnection
getSmall_world_topology	src/utils/configuration/NodeCfg.java	/^	public Boolean getSmall_world_topology() {$/;"	m	class:NodeCfg
getSpikingNeuron	src/spiking/node/plasticity/Afferent.java	/^	public Long getSpikingNeuron(){$/;"	m	class:Afferent
getSpikingThr	src/spiking/node/neuron/NodeNeuronsManager.java	/^	public Double getSpikingThr() {$/;"	m	class:NodeNeuronsManager
getSrc	src/utils/tools/IntegerCouple.java	/^	public Integer getSrc(){$/;"	m	class:IntegerCouple
getSrc	src/utils/tools/LongCouple.java	/^	public Long getSrc(){$/;"	m	class:LongCouple
getSrcNeuronId	src/spiking/controllers/node/NodeLink.java	/^	public Integer getSrcNeuronId() {$/;"	m	class:NodeLink
getSrcNodeId	src/spiking/controllers/node/NodeLink.java	/^	public Integer getSrcNodeId() {$/;"	m	class:NodeLink
getSrcRegionId	src/utils/configuration/RegionInterconnectionCfg.java	/^	public Integer getSrcRegionId() {$/;"	m	class:RegionInterconnectionCfg
getState	src/spiking/node/neuron/Neuron.java	/^	public Double getState() {$/;"	m	class:Neuron
getState	src/spiking/node/neuron/NodeNeuronsManager.java	/^	public Double getState(Long neuronId){$/;"	m	class:NodeNeuronsManager
getStatisticsCollector	src/spiking/node/NodesManager.java	/^	public StatisticsCollector getStatisticsCollector() {$/;"	m	class:NodesManager
getStatisticsCollector	src/spiking/node/NodesManager.java~	/^	public StatisticsCollector getStatisticsCollector() {$/;"	m	class:NodesManager
getStepInState	src/spiking/node/SpikingSynapse.java	/^	public Double getStepInState() {$/;"	m	class:SpikingSynapse
getStepInState	src/utils/statistics/CollectedBurn.java	/^	public Double getStepInState() {$/;"	m	class:CollectedBurn
getStop	src/utils/configuration/SpikingSimulatorCfg.java	/^	public int getStop() {$/;"	m	class:SpikingSimulatorCfg
getStopTime	src/spiking/controllers/node/NodeThread.java	/^	public double getStopTime() {$/;"	m	class:NodeThread
getStringMap	src/org/math/plot/plotObjects/Axis.java	/^	public HashMap<String, Double> getStringMap() {$/;"	m	class:Axis
getSubMatrixRangeCopy	src/org/math/plot/utils/Array.java	/^    public static double[][] getSubMatrixRangeCopy(double[][] M, int i1, int i2, int j1, int j2) {$/;"	m	class:Array
getSyn	src/spiking/internode/InterNodeSpike.java	/^	public Synapse getSyn() {$/;"	m	class:InterNodeSpike
getSyn	src/spiking/node/spikes/FixedBurnSpike.java	/^	public Synapse getSyn() {$/;"	m	class:FixedBurnSpike
getSynapse	src/spiking/node/plasticity/Afferent.java	/^	public Synapse getSynapse(){$/;"	m	class:Afferent
getT_arp	src/spiking/node/neuron/NodeNeuronsManager.java	/^	public Double getT_arp(){$/;"	m	class:NodeNeuronsManager
getT_arp	src/utils/configuration/NeuManCfg.java	/^	public Double getT_arp() {$/;"	m	class:NeuManCfg
getTabSizePower	src/org/math/plot/utils/FastMath.java	/^    private static int getTabSizePower(int tabSizePower) {$/;"	m	class:FastMath	file:
getTaum	src/spiking/node/Node.java	/^	public Double getTaum() {$/;"	m	class:Node
getTaum	src/spiking/node/plasticity/AfferentManager.java	/^	public Double getTaum() {$/;"	m	class:AfferentManager
getTaum	src/utils/configuration/NodeCfg.java	/^	public Double getTaum() {$/;"	m	class:NodeCfg
getTaup	src/spiking/node/Node.java	/^	public Double getTaup() {$/;"	m	class:Node
getTaup	src/spiking/node/plasticity/AfferentManager.java	/^	public Double getTaup() {$/;"	m	class:AfferentManager
getTaup	src/utils/configuration/NodeCfg.java	/^	public Double getTaup() {$/;"	m	class:NodeCfg
getText	src/org/math/io/StringPrintable.java	/^    public String getText();$/;"	m	interface:StringPrintable
getText	src/org/math/plot/MatrixTablePanel.java	/^    public String getText() {$/;"	m	class:MatrixTablePanel
getText	src/org/math/plot/components/ScalesFrame.java	/^        public String getText() {$/;"	m	class:ScalesFrame.ScalePanel
getText	src/org/math/plot/plotObjects/Label.java	/^	public String getText() {$/;"	m	class:Label
getText	src/org/math/plot/plots/Plot.java	/^        public String getText() {$/;"	m	class:Plot.DefaultDataPanel
getTextAngle	src/org/math/plot/render/AbstractDrawer.java	/^    public double getTextAngle() {$/;"	m	class:AbstractDrawer
getTextOffset	src/org/math/plot/render/AbstractDrawer.java	/^    public double[] getTextOffset() {$/;"	m	class:AbstractDrawer
getTimeStep	src/spiking/node/external_inputs/ExternalInput.java	/^	public int getTimeStep(){$/;"	m	class:ExternalInput
getTimeToBurn	src/spiking/internode/InterNodeBurningSpike.java	/^	public Double getTimeToBurn(){$/;"	m	class:InterNodeBurningSpike
getTimeToFire	src/spiking/node/neuron/Neuron.java	/^	public Double getTimeToFire() {$/;"	m	class:Neuron
getTimeToFire	src/spiking/node/neuron/NodeNeuronsManager.java	/^	public Double getTimeToFire(Long neuronId){$/;"	m	class:NodeNeuronsManager
getTimeToFire	src/utils/statistics/CollectedBurn.java	/^	public Double getTimeToFire() {$/;"	m	class:CollectedBurn
getTo	src/spiking/node/Node.java	/^	public Double getTo() {$/;"	m	class:Node
getTo	src/spiking/node/plasticity/AfferentManager.java	/^	public Double getTo(){$/;"	m	class:AfferentManager
getTo	src/utils/configuration/NodeCfg.java	/^	public Double getTo() {$/;"	m	class:NodeCfg
getTotalInterNodeConnectionsNumber	src/spiking/node/NodesManager.java	/^	public Long getTotalInterNodeConnectionsNumber(){$/;"	m	class:NodesManager
getTotalInterNodeConnectionsNumber	src/spiking/node/NodesManager.java~	/^	public Long getTotalInterNodeConnectionsNumber(){$/;"	m	class:NodesManager
getTotalN	src/spiking/node/NodesManager.java	/^	public Long getTotalN(){$/;"	m	class:NodesManager
getTotalN	src/spiking/node/NodesManager.java~	/^	public Long getTotalN(){$/;"	m	class:NodesManager
getType	src/spiking/node/NodesInterconnection.java	/^	public Integer getType() {$/;"	m	class:NodesInterconnection
getValue	src/org/math/plot/ParametersPanel.java	/^	public String getValue(int i) {$/;"	m	class:ParametersPanel
getValueAt	src/org/math/plot/DataSelectTable.java	/^		public Object getValueAt(int rowIndex, int columnIndex) {$/;"	m	class:DataSelectTable.Model
getValueIndex	src/org/math/plot/ParametersPanel.java	/^	public int getValueIndex(int i) {$/;"	m	class:ParametersPanel
getValues	src/org/math/plot/ParametersPanel.java	/^	public String[] getValues() {$/;"	m	class:ParametersPanel
getValuesIndex	src/org/math/plot/ParametersPanel.java	/^	public int[] getValuesIndex() {$/;"	m	class:ParametersPanel
getVertexNum	src/connectivity/conn_package/PackageReader.java	/^	public Integer getVertexNum(){$/;"	m	class:PackageReader
getVisible	src/org/math/plot/plotObjects/Axis.java	/^	public boolean getVisible() {$/;"	m	class:Axis
getVisible	src/org/math/plot/plotObjects/BasePlot.java	/^	public boolean getVisible() {$/;"	m	class:BasePlot
getVisible	src/org/math/plot/plotObjects/Label.java	/^	public boolean getVisible() {$/;"	m	class:Label
getVisible	src/org/math/plot/plotObjects/Line.java	/^	public boolean getVisible() {$/;"	m	class:Line
getVisible	src/org/math/plot/plotObjects/PaintImage.java	/^    public boolean getVisible() {$/;"	m	class:PaintImage
getVisible	src/org/math/plot/plotObjects/Plotable.java	/^	public boolean getVisible();$/;"	m	interface:Plotable
getVisible	src/org/math/plot/plotObjects/RasterImage.java	/^	public boolean getVisible() {$/;"	m	class:RasterImage
getVisible	src/org/math/plot/plots/Plot.java	/^    public boolean getVisible() {$/;"	m	class:Plot
getW_pre_exc	src/utils/configuration/NodeCfg.java	/^	public Double getW_pre_exc() {$/;"	m	class:NodeCfg
getW_pre_inh	src/utils/configuration/NodeCfg.java	/^	public Double getW_pre_inh() {$/;"	m	class:NodeCfg
getX	src/connectivity/nodes/Node.java	/^	public Double getX() {$/;"	m	class:Node
getY	src/connectivity/nodes/Node.java	/^	public Double getY() {$/;"	m	class:Node
getZ	src/connectivity/nodes/Node.java	/^	public Double getZ() {$/;"	m	class:Node
get_rewiring_P	src/utils/configuration/NodeCfg.java	/^	public Double get_rewiring_P() {$/;"	m	class:NodeCfg
getedgesNum	src/connectivity/conn_package/PackageReader.java	/^	public Long getedgesNum(){$/;"	m	class:PackageReader
getnSms	src/spiking/node/NodesManager.java	/^	public Integer getnSms() {$/;"	m	class:NodesManager
getnSms	src/spiking/node/NodesManager.java~	/^	public Integer getnSms() {$/;"	m	class:NodesManager
glob_Bn	src/utils/configuration/SpikingSimulatorCfg.java	/^	private Integer glob_Bn;$/;"	f	class:SpikingSimulatorCfg	file:
glob_IBI	src/utils/configuration/SpikingSimulatorCfg.java	/^	private Double glob_IBI;$/;"	f	class:SpikingSimulatorCfg	file:
glob_R	src/utils/configuration/SpikingSimulatorCfg.java	/^	private Double glob_R;$/;"	f	class:SpikingSimulatorCfg	file:
glob_etam	src/utils/configuration/SpikingSimulatorCfg.java	/^	private Double glob_etam = Constants.ETAM;$/;"	f	class:SpikingSimulatorCfg	file:
glob_etap	src/utils/configuration/SpikingSimulatorCfg.java	/^	private Double glob_etap = Constants.ETAP;$/;"	f	class:SpikingSimulatorCfg	file:
glob_external_inputs_amplitude	src/utils/configuration/SpikingSimulatorCfg.java	/^	private Double glob_external_inputs_amplitude; $/;"	f	class:SpikingSimulatorCfg	file:
glob_external_inputs_fireduration	src/utils/configuration/SpikingSimulatorCfg.java	/^	private Integer glob_external_inputs_fireduration;$/;"	f	class:SpikingSimulatorCfg	file:
glob_external_inputs_firerate	src/utils/configuration/SpikingSimulatorCfg.java	/^	private Double glob_external_inputs_firerate; $/;"	f	class:SpikingSimulatorCfg	file:
glob_external_inputs_number	src/utils/configuration/SpikingSimulatorCfg.java	/^	private Integer glob_external_inputs_number;$/;"	f	class:SpikingSimulatorCfg	file:
glob_external_inputs_time_offset	src/utils/configuration/SpikingSimulatorCfg.java	/^	private Double glob_external_inputs_time_offset;$/;"	f	class:SpikingSimulatorCfg	file:
glob_external_inputs_timestep	src/utils/configuration/SpikingSimulatorCfg.java	/^	private Integer glob_external_inputs_timestep;$/;"	f	class:SpikingSimulatorCfg	file:
glob_external_inputs_type	src/utils/configuration/SpikingSimulatorCfg.java	/^	private Integer glob_external_inputs_type;$/;"	f	class:SpikingSimulatorCfg	file:
glob_k	src/utils/configuration/SpikingSimulatorCfg.java	/^	private Integer glob_k;$/;"	f	class:SpikingSimulatorCfg	file:
glob_mu_w_exc	src/utils/configuration/SpikingSimulatorCfg.java	/^	private Double glob_mu_w_exc;$/;"	f	class:SpikingSimulatorCfg	file:
glob_mu_w_inh	src/utils/configuration/SpikingSimulatorCfg.java	/^	private Double glob_mu_w_inh;$/;"	f	class:SpikingSimulatorCfg	file:
glob_n	src/utils/configuration/SpikingSimulatorCfg.java	/^	private Long glob_n;$/;"	f	class:SpikingSimulatorCfg	file:
glob_plasticity	src/utils/configuration/SpikingSimulatorCfg.java	/^	private Boolean glob_plasticity;$/;"	f	class:SpikingSimulatorCfg	file:
glob_pw_max	src/utils/configuration/SpikingSimulatorCfg.java	/^	private Double glob_pw_max = Constants.PWMAX;$/;"	f	class:SpikingSimulatorCfg	file:
glob_rewiring_P	src/utils/configuration/SpikingSimulatorCfg.java	/^	private Double glob_rewiring_P;$/;"	f	class:SpikingSimulatorCfg	file:
glob_taum	src/utils/configuration/SpikingSimulatorCfg.java	/^	private Double glob_taum = Constants.TAUM;$/;"	f	class:SpikingSimulatorCfg	file:
glob_taup	src/utils/configuration/SpikingSimulatorCfg.java	/^	private Double glob_taup = Constants.TAUP;$/;"	f	class:SpikingSimulatorCfg	file:
glob_to	src/utils/configuration/SpikingSimulatorCfg.java	/^	private Double glob_to = Constants.TO;	$/;"	f	class:SpikingSimulatorCfg	file:
glob_w_pre_exc	src/utils/configuration/SpikingSimulatorCfg.java	/^	private Double glob_w_pre_exc;$/;"	f	class:SpikingSimulatorCfg	file:
glob_w_pre_inh	src/utils/configuration/SpikingSimulatorCfg.java	/^	private Double glob_w_pre_inh;$/;"	f	class:SpikingSimulatorCfg	file:
globalId	src/connectivity/nodes/Node.java	/^	private static Integer globalId=0;$/;"	f	class:Node	file:
global_neuron_manager	src/utils/configuration/SpikingSimulatorCfg.java	/^	private NeuManCfg global_neuron_manager;$/;"	f	class:SpikingSimulatorCfg	file:
goodCurveGuessThreshold	src/spiking/node/NodesManager.java	/^	private final static Integer goodCurveGuessThreshold= 5;$/;"	f	class:NodesManager	file:
goodCurveGuessThreshold	src/spiking/node/NodesManager.java~	/^	private final static Integer goodCurveGuessThreshold= 5;$/;"	f	class:NodesManager	file:
gradC	src/org/math/plot/plots/QuantileLayerPlot.java	/^	Color gradC;$/;"	f	class:QuantileLayerPlot
gradC_0sigma	src/org/math/plot/plots/GaussianDensityLayerPlot.java	/^	Color gradC_0sigma, gradC_1sigma, gradC_2sigma, gradC_3sigma;$/;"	f	class:GaussianDensityLayerPlot
gradC_1sigma	src/org/math/plot/plots/GaussianDensityLayerPlot.java	/^	Color gradC_0sigma, gradC_1sigma, gradC_2sigma, gradC_3sigma;$/;"	f	class:GaussianDensityLayerPlot
gradC_2sigma	src/org/math/plot/plots/GaussianDensityLayerPlot.java	/^	Color gradC_0sigma, gradC_1sigma, gradC_2sigma, gradC_3sigma;$/;"	f	class:GaussianDensityLayerPlot
gradC_3sigma	src/org/math/plot/plots/GaussianDensityLayerPlot.java	/^	Color gradC_0sigma, gradC_1sigma, gradC_2sigma, gradC_3sigma;$/;"	f	class:GaussianDensityLayerPlot
gradientColor	src/org/math/plot/plotObjects/Line.java	/^	protected Color gradientColor;$/;"	f	class:Line
grid	src/org/math/plot/canvas/PlotCanvas.java	/^    protected BasePlot grid;$/;"	f	class:PlotCanvas
gridVisible	src/org/math/plot/plotObjects/Axis.java	/^	boolean gridVisible = true;$/;"	f	class:Axis
hasExternalInput	src/spiking/controllers/node/NodeThread.java	/^	public boolean hasExternalInput() {$/;"	m	class:NodeThread
hasExternalInput	src/spiking/node/Node.java	/^	public Boolean hasExternalInput(){$/;"	m	class:Node
hasExternalInputs	src/spiking/node/Node.java	/^	private Boolean hasExternalInputs = false;$/;"	f	class:Node	file:
hasInterNodeSpikes	src/spiking/controllers/node/NodeThread.java	/^	public Boolean hasInterNodeSpikes(){$/;"	m	class:NodeThread
hashCode	src/spiking/controllers/node/NodeLink.java	/^	public int hashCode() {$/;"	m	class:NodeLink
hashCode	src/spiking/node/Synapse.java	/^	public int hashCode() {$/;"	m	class:Synapse
hashCode	src/utils/tools/CompressedFire.java	/^	public int hashCode() {$/;"	m	class:CompressedFire
hashCode	src/utils/tools/IntegerCouple.java	/^	public int hashCode() {$/;"	m	class:IntegerCouple
hashCode	src/utils/tools/LongCouple.java	/^	public int hashCode() {$/;"	m	class:LongCouple
haveSameEvenness	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean haveSameEvenness(int a, int b) {$/;"	m	class:NumbersUtils
haveSameEvenness	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean haveSameEvenness(long a, long b) {$/;"	m	class:NumbersUtils
haveSameSign	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean haveSameSign(int a, int b) {$/;"	m	class:NumbersUtils
haveSameSign	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean haveSameSign(long a, long b) {$/;"	m	class:NumbersUtils
header	src/org/math/plot/DataSelectTable.java	/^	LinkedList<String> header;$/;"	f	class:DataSelectTable
headers	src/org/math/plot/MatrixTablePanel.java	/^    private String[] headers;$/;"	f	class:MatrixTablePanel	file:
histogram	src/org/math/plot/utils/Histogram.java	/^	public static double[] histogram(double[] values, double min, double max, int n) {$/;"	m	class:Histogram
histogram	src/org/math/plot/utils/Histogram.java	/^	public static double[] histogram(double[] values, double[] bounds) {$/;"	m	class:Histogram
histogram	src/org/math/plot/utils/Histogram.java	/^	public static double[] histogram(double[] values, int n) {$/;"	m	class:Histogram
histogram_2D	src/org/math/plot/utils/Histogram.java	/^	public static double[] histogram_2D(double[][] values, double minX, double maxX, int nX, double minY, double maxY, int nY) {$/;"	m	class:Histogram
histogram_2D	src/org/math/plot/utils/Histogram.java	/^	public static double[] histogram_2D(double[][] values, double[] boundsX, double[] boundsY) {$/;"	m	class:Histogram
histogram_2D	src/org/math/plot/utils/Histogram.java	/^	public static double[] histogram_2D(double[][] values, int nX, int nY) {$/;"	m	class:Histogram
histogram_3D	src/org/math/plot/utils/Histogram.java	/^	public static double[] histogram_3D(double[][] values, double[] boundsX, double[] boundsY, double[] boundsZ) {$/;"	m	class:Histogram
histogram_classes	src/org/math/plot/utils/Histogram.java	/^	public static double[][] histogram_classes(double[] values, double min, double max, int n) {$/;"	m	class:Histogram
histogram_classes	src/org/math/plot/utils/Histogram.java	/^	public static double[][] histogram_classes(double[] values, double[] bounds) {$/;"	m	class:Histogram
histogram_classes	src/org/math/plot/utils/Histogram.java	/^	public static double[][] histogram_classes(double[] values, int n) {$/;"	m	class:Histogram
histogram_classes_2D	src/org/math/plot/utils/Histogram.java	/^	public static double[][] histogram_classes_2D(double[][] values, double minX, double maxX, int nX, double minY, double maxY, int nY) {$/;"	m	class:Histogram
histogram_classes_2D	src/org/math/plot/utils/Histogram.java	/^	public static double[][] histogram_classes_2D(double[][] values, double[] boundsX, double[] boundsY) {$/;"	m	class:Histogram
histogram_classes_2D	src/org/math/plot/utils/Histogram.java	/^	public static double[][] histogram_classes_2D(double[][] values, int nX, int nY) {$/;"	m	class:Histogram
histogram_classes_3D	src/org/math/plot/utils/Histogram.java	/^	public static double[][] histogram_classes_3D(double[][] values, int nX, int nY, int nZ) {$/;"	m	class:Histogram
hypot	src/org/math/plot/utils/FastMath.java	/^    public static double hypot(double x, double y) {$/;"	m	class:FastMath
id	src/connectivity/nodes/Node.java	/^	private Integer id=globalId;$/;"	f	class:Node	file:
id	src/spiking/node/Node.java	/^	private Integer id;$/;"	f	class:Node	file:
id	src/utils/configuration/NodeCfg.java	/^	private Integer id;$/;"	f	class:NodeCfg	file:
img	src/org/math/plot/plotObjects/PaintImage.java	/^    protected Image img;$/;"	f	class:PaintImage
img	src/org/math/plot/plotObjects/RasterImage.java	/^	Image img;$/;"	f	class:RasterImage
in	src/org/math/io/littleendian/LEDataInputStream.java	/^    protected InputStream in;$/;"	f	class:LEDataInputStream
includeInBounds	src/org/math/plot/PlotPanel.java	/^    public void includeInBounds(Plot plot) {$/;"	m	class:PlotPanel
includeInBounds	src/org/math/plot/PlotPanel.java	/^    public void includeInBounds(double... into) {$/;"	m	class:PlotPanel
includeInBounds	src/org/math/plot/canvas/PlotCanvas.java	/^    public void includeInBounds(Plot plot) {$/;"	m	class:PlotCanvas
includeInBounds	src/org/math/plot/canvas/PlotCanvas.java	/^    public void includeInBounds(double... into) {$/;"	m	class:PlotCanvas
includeInBounds	src/org/math/plot/plotObjects/Base.java	/^    public boolean includeInBounds(double[] XY) {$/;"	m	class:Base
includeInBounds	src/org/math/plot/plotObjects/Base.java	/^    public boolean includeInBounds(int dim, double XY) {$/;"	m	class:Base
increment	src/org/math/plot/utils/Array.java	/^    public static double[] increment(int m, double begin, double pitch) {$/;"	m	class:Array
increment	src/org/math/plot/utils/Array.java	/^    public static double[][] increment(int m, int n, double begin, double pitch) {$/;"	m	class:Array
index	src/org/math/plot/plotObjects/Axis.java	/^	protected int index;$/;"	f	class:Axis
index2	src/org/math/plot/utils/Histogram.java	/^	private static int index2(int i, int j, int imax) {$/;"	m	class:Histogram	file:
index3	src/org/math/plot/utils/Histogram.java	/^	private static int index3(int i, int j, int k,int imax, int jmax) {$/;"	m	class:Histogram	file:
indexes	src/connectivity/nodes/ConnectivityPackageManager.java	/^	private HashMap<IntegerCouple, Integer> indexes = new HashMap<>();$/;"	f	class:ConnectivityPackageManager	file:
inhibithory	src/spiking/node/Node.java	/^	private Long inhibithory;$/;"	f	class:Node	file:
inhibithory	src/spiking/node/NodesManager.java	/^	private Long inhibithory=0l;$/;"	f	class:NodesManager	file:
inhibithory	src/spiking/node/NodesManager.java~	/^	private Long inhibithory=0l;$/;"	f	class:NodesManager	file:
inhibithoryPresynapticDefVal	src/spiking/node/neuron/NodeNeuronsManager.java	/^	private Double inhibithoryPresynapticDefVal=-1.0;$/;"	f	class:NodeNeuronsManager	file:
init	src/org/math/plot/DataPanel.java	/^    protected void init() {$/;"	m	class:DataPanel
init	src/org/math/plot/plotObjects/Axis.java	/^	public void init() {$/;"	m	class:Axis
init	src/org/math/plot/plotObjects/Base.java	/^	private void init(int d) {$/;"	m	class:Base	file:
init	src/spiking/controllers/node/NodeThread.java	/^	public void init($/;"	m	class:NodeThread
init	src/spiking/node/SynapsesManager.java	/^	private void init(){ $/;"	m	class:SynapsesManager	file:
init	src/spiking/node/external_inputs/ExternalInput.java	/^	private void init(){$/;"	m	class:ExternalInput	file:
init	src/spiking/node/neuron/NodeNeuronsManager.java	/^	private void init(){$/;"	m	class:NodeNeuronsManager	file:
init	src/spiking/simulator/SpikingNeuralSimulator.java	/^	public void init(){$/;"	m	class:SpikingNeuralSimulator
initBaseCoordsProjection	src/org/math/plot/render/Projection.java	/^    public void initBaseCoordsProjection(boolean reset) {$/;"	m	class:Projection
initBaseCoordsProjection	src/org/math/plot/render/Projection3D.java	/^    public void initBaseCoordsProjection(boolean reset) {$/;"	m	class:Projection3D
initBasenGrid	src/org/math/plot/canvas/Plot2DCanvas.java	/^	public void initBasenGrid() {$/;"	m	class:Plot2DCanvas
initBasenGrid	src/org/math/plot/canvas/Plot2DCanvas.java	/^	public void initBasenGrid(double[] min, double[] max) {$/;"	m	class:Plot2DCanvas
initBasenGrid	src/org/math/plot/canvas/Plot3DCanvas.java	/^    public void initBasenGrid() {$/;"	m	class:Plot3DCanvas
initBasenGrid	src/org/math/plot/canvas/Plot3DCanvas.java	/^    public void initBasenGrid(double[] min, double[] max) {$/;"	m	class:Plot3DCanvas
initBasenGrid	src/org/math/plot/canvas/PlotCanvas.java	/^    public abstract void initBasenGrid();$/;"	m	class:PlotCanvas
initBasenGrid	src/org/math/plot/canvas/PlotCanvas.java	/^    public abstract void initBasenGrid(double[] min, double[] max);$/;"	m	class:PlotCanvas
initBasenGrid	src/org/math/plot/canvas/PlotCanvas.java	/^    public void initBasenGrid(Base b, BasePlot bp) {$/;"	m	class:PlotCanvas
initBasenGrid	src/org/math/plot/canvas/PlotCanvas.java	/^    public void initBasenGrid(double[] min, double[] max, String[] axesScales, String[] axesLabels) {$/;"	m	class:PlotCanvas
initDarkLabels	src/org/math/plot/plotObjects/Axis.java	/^	private void initDarkLabels() {$/;"	m	class:Axis	file:
initDarkLines	src/org/math/plot/plotObjects/Axis.java	/^	private void initDarkLines() {$/;"	m	class:Axis	file:
initDrawer	src/org/math/plot/canvas/Plot2DCanvas.java	/^	public void initDrawer() {$/;"	m	class:Plot2DCanvas
initDrawer	src/org/math/plot/canvas/Plot3DCanvas.java	/^    public void initDrawer() {$/;"	m	class:Plot3DCanvas
initDrawer	src/org/math/plot/canvas/PlotCanvas.java	/^    public abstract void initDrawer();$/;"	m	class:PlotCanvas
initExcitInhib	src/spiking/node/Node.java	/^	public void initExcitInhib(){$/;"	m	class:Node
initExtInput	src/spiking/controllers/node/NodeThread.java	/^	private void initExtInput(){$/;"	m	class:NodeThread	file:
initFromConfigFileAndConnectivityPackage	src/spiking/simulator/SpikingNeuralSimulator.java	/^	public void initFromConfigFileAndConnectivityPackage(String configPath, String connPkgPath, Boolean do_fast) $/;"	m	class:SpikingNeuralSimulator
initGraphics	src/org/math/plot/render/AbstractDrawer.java	/^    public void initGraphics(Graphics2D _comp2D) {$/;"	m	class:AbstractDrawer
initOriginEnd	src/org/math/plot/plotObjects/Axis.java	/^	private void initOriginEnd() {$/;"	m	class:Axis	file:
initPanel	src/org/math/plot/canvas/PlotCanvas.java	/^    private void initPanel() {$/;"	m	class:PlotCanvas	file:
initReverseMap	src/org/math/plot/canvas/PlotCanvas.java	/^    private void initReverseMap(int j) {$/;"	m	class:PlotCanvas	file:
initSize	src/org/math/plot/DataPanel.java	/^    protected void initSize() {$/;"	m	class:DataPanel
initToolBar	src/org/math/plot/DataPanel.java	/^    protected void initToolBar() {$/;"	m	class:DataPanel
initialized	src/spiking/node/NodesManager.java	/^	private Boolean initialized=false;$/;"	f	class:NodesManager	file:
initialized	src/spiking/node/NodesManager.java~	/^	private Boolean initialized=false;$/;"	f	class:NodesManager	file:
initialized	src/spiking/simulator/SpikingNeuralSimulator.java	/^	private Boolean initialized=false;$/;"	f	class:SpikingNeuralSimulator	file:
insert	src/org/math/plot/utils/Array.java	/^    public static double[] insert(double[] x, int I, double... y) {$/;"	m	class:Array
insert	src/utils/tools/NiceQueue.java	/^    public void insert(Double tf, Long fn){$/;"	m	class:NiceQueue
insertColumn	src/org/math/plot/utils/Array.java	/^    public static double[][] insertColumn(double[][] x, double[] y, int J) {$/;"	m	class:Array
insertColumns	src/org/math/plot/utils/Array.java	/^    public static double[][] insertColumns(double[][] x, double[][] y, int J) {$/;"	m	class:Array
insertRow	src/org/math/plot/utils/Array.java	/^    public static double[][] insertRow(double[][] x, double[] y, int I) {$/;"	m	class:Array
insertRows	src/org/math/plot/utils/Array.java	/^    public static double[][] insertRows(double[][] x, double[][] y, int I) {$/;"	m	class:Array
inset	src/org/math/plot/components/LegendPanel.java	/^    private int inset = 5;$/;"	f	class:LegendPanel	file:
instantToFire	src/spiking/node/SpikingSynapse.java	/^	private Double instantToFire;$/;"	f	class:SpikingSynapse	file:
intAsUnsigned	src/org/math/plot/utils/NumbersUtils.java	/^    public static long intAsUnsigned(int value) {$/;"	m	class:NumbersUtils
intHash	src/org/math/plot/utils/NumbersUtils.java	/^    public static int intHash(long a) {$/;"	m	class:NumbersUtils
intMaskLSBits0	src/org/math/plot/utils/NumbersUtils.java	/^    public static int intMaskLSBits0(int bitSize) {$/;"	m	class:NumbersUtils
intMaskLSBits1	src/org/math/plot/utils/NumbersUtils.java	/^    public static int intMaskLSBits1(int bitSize) {$/;"	m	class:NumbersUtils
intMaskMSBits0	src/org/math/plot/utils/NumbersUtils.java	/^    public static int intMaskMSBits0(int bitSize) {$/;"	m	class:NumbersUtils
intMaskMSBits1	src/org/math/plot/utils/NumbersUtils.java	/^    public static int intMaskMSBits1(int bitSize) {$/;"	m	class:NumbersUtils
interNodeBurningSpikes	src/spiking/controllers/node/NodeThread.java	/^	private PriorityQueue<InterNodeBurningSpike> interNodeBurningSpikes=new PriorityQueue<InterNodeBurningSpike>();$/;"	f	class:NodeThread	file:
interNodeSpike	src/spiking/internode/InterNodeBurningSpike.java	/^	private InterNodeSpike interNodeSpike;$/;"	f	class:InterNodeBurningSpike	file:
interRegionConnectionsNum	src/spiking/node/SynapsesManager.java	/^	public int interRegionConnectionsNum(){$/;"	m	class:SynapsesManager
inter_node_conns_num	src/spiking/node/NodesManager.java	/^	private Long inter_node_conns_num=0l;$/;"	f	class:NodesManager	file:
inter_node_conns_num	src/spiking/node/NodesManager.java~	/^	private Long inter_node_conns_num=0l;$/;"	f	class:NodesManager	file:
internalAmplitude4Test	src/spiking/simulator/SpikingNeuralSimulator.java	/^	public static final Double internalAmplitude4Test = 1.0;$/;"	f	class:SpikingNeuralSimulator
internodeFires	src/spiking/controllers/node/NodeThread.java	/^	private ArrayList<InterNodeSpike> internodeFires;	$/;"	f	class:NodeThread	file:
invertIndex	src/org/math/plot/DataSelectPanel.java	/^            public int[] invertIndex(int[] ind) {$/;"	m	class:DataSelectPanel.ParameterRow.Sorting
isBigEndian	src/org/math/io/files/BinaryFile.java	/^    private boolean isBigEndian(String endian) {$/;"	m	class:BinaryFile	file:
isBigEndian	src/org/math/io/stream/BinaryInputStream.java	/^    private boolean isBigEndian(String endian) {$/;"	m	class:BinaryInputStream	file:
isBigEndian	src/org/math/io/stream/BinaryOutputStream.java	/^    private boolean isBigEndian(String endian) {$/;"	m	class:BinaryOutputStream	file:
isCellEditable	src/org/math/plot/DataSelectTable.java	/^		public boolean isCellEditable(int rowIndex, int columnIndex) {$/;"	m	class:DataSelectTable.Model
isColumnDimension	src/org/math/plot/utils/Array.java	/^    public static boolean isColumnDimension(double[][] M, int n) {$/;"	m	class:Array
isDiff	src/org/math/plot/render/AWTDrawer.java	/^    static boolean isDiff(double[] x, int[] y) {$/;"	m	class:AWTDrawer
isDouble	src/org/math/plot/utils/Array.java	/^    public static boolean isDouble(String s) {$/;"	m	class:Array
isEven	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean isEven(int a) {$/;"	m	class:NumbersUtils
isEven	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean isEven(long a) {$/;"	m	class:NumbersUtils
isExcitatory	src/spiking/node/FiringNeuron.java	/^	private Boolean isExcitatory;$/;"	f	class:FiringNeuron	file:
isExcitatory	src/spiking/node/FiringNeuron.java	/^	public Boolean isExcitatory() {$/;"	m	class:FiringNeuron
isExcitatory	src/spiking/node/Node.java	/^	public boolean isExcitatory(Long neuronId){$/;"	m	class:Node
isExcitatory	src/spiking/node/neuron/NodeNeuronsManager.java	/^	public boolean isExcitatory(Long neuronId){$/;"	m	class:NodeNeuronsManager
isExcitatory	src/utils/statistics/CollectedFire.java	/^	private Boolean isExcitatory; $/;"	f	class:CollectedFire	file:
isExternal	src/spiking/node/FiringNeuron.java	/^	private Boolean isExternal;$/;"	f	class:FiringNeuron	file:
isExternal	src/spiking/node/FiringNeuron.java	/^	public Boolean isExternal() {$/;"	m	class:FiringNeuron
isExternal	src/utils/statistics/CollectedFire.java	/^	private Boolean isExternal;$/;"	f	class:CollectedFire	file:
isExternalInput	src/spiking/node/Node.java	/^	public Boolean isExternalInput(Long neuronId){$/;"	m	class:Node
isInClockwiseDomain	src/org/math/plot/utils/FastMath.java	/^    public static boolean isInClockwiseDomain(double startAngRad, double angSpanRad, double angRad) {$/;"	m	class:FastMath
isInRange	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean isInRange(double min, double max, double a) {$/;"	m	class:NumbersUtils
isInRange	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean isInRange(float min, float max, float a) {$/;"	m	class:NumbersUtils
isInRange	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean isInRange(int min, int max, int a) {$/;"	m	class:NumbersUtils
isInRange	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean isInRange(long min, long max, long a) {$/;"	m	class:NumbersUtils
isInRangeSigned	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean isInRangeSigned(int a, int bitSize) {$/;"	m	class:NumbersUtils
isInRangeSigned	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean isInRangeSigned(long a, int bitSize) {$/;"	m	class:NumbersUtils
isInRangeUnsigned	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean isInRangeUnsigned(int a, int bitSize) {$/;"	m	class:NumbersUtils
isInRangeUnsigned	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean isInRangeUnsigned(long a, int bitSize) {$/;"	m	class:NumbersUtils
isLength	src/org/math/plot/utils/Array.java	/^    public static boolean isLength(double[] M, int n) {$/;"	m	class:Array
isList	src/org/math/plot/ParametersPanel.java	/^	private boolean[] isList;$/;"	f	class:ParametersPanel	file:
isNaNOrInfinite	src/org/math/plot/utils/FastMath.java	/^    public static boolean isNaNOrInfinite(double value) {$/;"	m	class:FastMath
isNaNOrInfinite	src/org/math/plot/utils/FastMath.java	/^    public static boolean isNaNOrInfinite(float value) {$/;"	m	class:FastMath
isNaNOrInfinite	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean isNaNOrInfinite(double a) {$/;"	m	class:NumbersUtils
isNaNOrInfinite	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean isNaNOrInfinite(float a) {$/;"	m	class:NumbersUtils
isOdd	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean isOdd(int a) {$/;"	m	class:NumbersUtils
isOdd	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean isOdd(long a) {$/;"	m	class:NumbersUtils
isOptimizedDrawingEnabled	src/org/math/plot/canvas/PlotCanvas.java	/^    public boolean isOptimizedDrawingEnabled() {$/;"	m	class:PlotCanvas
isPowerOfTwo	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean isPowerOfTwo(int a) {$/;"	m	class:NumbersUtils
isPowerOfTwo	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean isPowerOfTwo(long a) {$/;"	m	class:NumbersUtils
isRowDimension	src/org/math/plot/utils/Array.java	/^    public static boolean isRowDimension(double[][] M, int m) {$/;"	m	class:Array
isSelected	src/org/math/plot/plotObjects/Axis.java	/^	public double[] isSelected(int[] screenCoordTest, AbstractDrawer draw) {$/;"	m	class:Axis
isSelected	src/org/math/plot/plotObjects/Editable.java	/^	public double[] isSelected(int[] screenCoord, AbstractDrawer draw);$/;"	m	interface:Editable
isSelected	src/org/math/plot/plotObjects/Noteable.java	/^	public double[] isSelected(int[] screenCoord, AbstractDrawer draw);$/;"	m	interface:Noteable
isSelected	src/org/math/plot/plots/BoxPlot2D.java	/^    public double[] isSelected(int[] screenCoordTest, AbstractDrawer draw) {$/;"	m	class:BoxPlot2D
isSelected	src/org/math/plot/plots/BoxPlot3D.java	/^    public double[] isSelected(int[] screenCoordTest, AbstractDrawer draw) {$/;"	m	class:BoxPlot3D
isSelected	src/org/math/plot/plots/CloudPlot2D.java	/^    public double[] isSelected(int[] screenCoordTest, AbstractDrawer draw) {$/;"	m	class:CloudPlot2D
isSelected	src/org/math/plot/plots/CloudPlot3D.java	/^    public double[] isSelected(int[] screenCoordTest, AbstractDrawer draw) {$/;"	m	class:CloudPlot3D
isSelected	src/org/math/plot/plots/GridPlot3D.java	/^    public double[] isSelected(int[] screenCoordTest, AbstractDrawer draw) {$/;"	m	class:GridPlot3D
isSelected	src/org/math/plot/plots/HistogramPlot2D.java	/^    public double[] isSelected(int[] screenCoordTest, AbstractDrawer draw) {$/;"	m	class:HistogramPlot2D
isSelected	src/org/math/plot/plots/HistogramPlot3D.java	/^    public double[] isSelected(int[] screenCoordTest, AbstractDrawer draw) {$/;"	m	class:HistogramPlot3D
isSelected	src/org/math/plot/plots/LayerPlot.java	/^	public double[] isSelected(int[] screenCoordTest, AbstractDrawer draw) {$/;"	m	class:LayerPlot
isSelected	src/org/math/plot/plots/Plot.java	/^    public abstract double[] isSelected(int[] screenCoordTest, AbstractDrawer draw);$/;"	m	class:Plot
isSelected	src/org/math/plot/plots/ScatterPlot.java	/^    public double[] isSelected(int[] screenCoordTest, AbstractDrawer draw) {$/;"	m	class:ScatterPlot
isSignedPowerOfTwo	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean isSignedPowerOfTwo(int a) {$/;"	m	class:NumbersUtils
isSignedPowerOfTwo	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean isSignedPowerOfTwo(long a) {$/;"	m	class:NumbersUtils
isValidBitSizeForSignedInt	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean isValidBitSizeForSignedInt(int bitSize) {$/;"	m	class:NumbersUtils
isValidBitSizeForSignedLong	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean isValidBitSizeForSignedLong(int bitSize) {$/;"	m	class:NumbersUtils
isValidBitSizeForUnsignedInt	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean isValidBitSizeForUnsignedInt(int bitSize) {$/;"	m	class:NumbersUtils
isValidBitSizeForUnsignedLong	src/org/math/plot/utils/NumbersUtils.java	/^    public static boolean isValidBitSizeForUnsignedLong(int bitSize) {$/;"	m	class:NumbersUtils
k	src/spiking/node/Node.java	/^	private Integer k=20;	$/;"	f	class:Node	file:
k	src/utils/configuration/NodeCfg.java	/^	private Integer k;$/;"	f	class:NodeCfg	file:
k4Test	src/spiking/simulator/SpikingNeuralSimulator.java	/^	public static final Integer k4Test = 20;$/;"	f	class:SpikingNeuralSimulator
keepRunning	src/spiking/controllers/node/NodeThread.java	/^	private Boolean keepRunning=true;$/;"	f	class:NodeThread	file:
keepRunning	src/utils/statistics/StatisticsCollector.java	/^	private Boolean keepRunning=true;$/;"	f	class:StatisticsCollector	file:
keep_running	src/spiking/simulator/SpikingNeuralSimulator.java	/^	private Boolean keep_running=true;$/;"	f	class:SpikingNeuralSimulator	file:
kill	src/spiking/controllers/node/NodeThread.java	/^	public void kill(){$/;"	m	class:NodeThread
kill	src/utils/statistics/StatisticsCollector.java	/^	public void kill(){$/;"	m	class:StatisticsCollector
killAll	src/spiking/node/NodesManager.java	/^	public void killAll() {$/;"	m	class:NodesManager
killAll	src/spiking/node/NodesManager.java~	/^	public void killAll() {$/;"	m	class:NodesManager
killAll	src/spiking/simulator/SpikingNeuralSimulator.java	/^	public void killAll(){$/;"	m	class:SpikingNeuralSimulator
kr4Test	src/spiking/simulator/SpikingNeuralSimulator.java	/^	public static final Double kr4Test = 0.3;$/;"	f	class:SpikingNeuralSimulator
label	src/connectivity/nodes/Node.java	/^	private String label;$/;"	f	class:Node	file:
label	src/org/math/plot/plotObjects/Axis.java	/^	protected String label;$/;"	f	class:Axis
label	src/org/math/plot/plotObjects/Label.java	/^	protected String label;$/;"	f	class:Label
labels	src/org/math/plot/ParametersPanel.java	/^	private JLabel[] labels;$/;"	f	class:ParametersPanel	file:
labelsSlicing	src/org/math/plot/plotObjects/Axis.java	/^	protected double[] labelsSlicing;$/;"	f	class:Axis
lastBurningTime	src/spiking/node/Synapse.java	/^	private Double lastBurningTime;$/;"	f	class:Synapse	file:
lastBurningTime	src/spiking/node/neuron/Neuron.java	/^	private Double lastBurningTime; $/;"	f	class:Neuron	file:
lastBurningTimes	src/spiking/node/neuron/NodeNeuronsManager.java	/^	private HashMap<Long, Double> lastBurningTimes;$/;"	f	class:NodeNeuronsManager	file:
lastFireTime	src/spiking/node/plasticity/Afferent.java	/^	private Double lastFireTime;$/;"	f	class:Afferent	file:
lastFiringTime	src/spiking/node/neuron/Neuron.java	/^	private Double lastFiringTime; $/;"	f	class:Neuron	file:
lastFiringTimes	src/spiking/node/neuron/NodeNeuronsManager.java	/^	private HashMap<Long, Double> lastFiringTimes;$/;"	f	class:NodeNeuronsManager	file:
layers	src/org/math/plot/plots/Plot.java	/^    public LinkedList<LayerPlot> layers;$/;"	f	class:Plot
ld4Test	src/spiking/simulator/SpikingNeuralSimulator.java	/^	public static final Double ld4Test = 0.001; $/;"	f	class:SpikingNeuralSimulator
legend	src/org/math/plot/components/DatasFrame.java	/^	private LegendPanel legend;$/;"	f	class:DatasFrame	file:
legends	src/org/math/plot/components/LegendPanel.java	/^    LinkedList<Legend> legends;$/;"	f	class:LegendPanel
length	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final long length() throws IOException {$/;"	m	class:LERandomAccessFile
length	src/spiking/node/Synapse.java	/^	private Double length;$/;"	f	class:Synapse	file:
leveldebprintln	src/spiking/controllers/node/NodeThread.java	/^	private void leveldebprintln(String s, int level){$/;"	m	class:NodeThread	file:
lif	src/spiking/controllers/node/NodeThread.java	/^  private Boolean lif = false;$/;"	f	class:NodeThread	file:
lif	src/utils/configuration/SpikingSimulatorCfg.java	/^    private Boolean lif;$/;"	f	class:SpikingSimulatorCfg	file:
lightLabelAngle	src/org/math/plot/plotObjects/Axis.java	/^	protected double lightLabelAngle = 0;$/;"	f	class:Axis
lightLabelFont	src/org/math/plot/plotObjects/Axis.java	/^	protected Font lightLabelFont = AbstractDrawer.DEFAULT_FONT;$/;"	f	class:Axis
lightLabelNames	src/org/math/plot/plotObjects/Axis.java	/^	protected String[] lightLabelNames;$/;"	f	class:Axis
lightLabels	src/org/math/plot/plotObjects/Axis.java	/^	protected Label[] lightLabels;$/;"	f	class:Axis
lightLabels_base_offset	src/org/math/plot/plotObjects/Axis.java	/^	protected double lightLabels_base_offset = 0.05;$/;"	f	class:Axis
lightLines	src/org/math/plot/plotObjects/Axis.java	/^	protected Line[][] lightLines;$/;"	f	class:Axis
line_type	src/org/math/plot/render/AbstractDrawer.java	/^    protected int line_type = CONTINOUS_LINE;$/;"	f	class:AbstractDrawer
line_width	src/org/math/plot/render/AbstractDrawer.java	/^    protected int line_width = DEFAULT_LINE_WIDTH;$/;"	f	class:AbstractDrawer
linear_check	src/org/math/plot/components/ScalesFrame.java	/^        private JRadioButton linear_check = new JRadioButton("Linear");$/;"	f	class:ScalesFrame.ScalePanel	file:
linear_slicing	src/org/math/plot/plotObjects/Axis.java	/^	protected int linear_slicing = 10;$/;"	f	class:Axis
linesSlicing	src/org/math/plot/plotObjects/Axis.java	/^	protected double[] linesSlicing;$/;"	f	class:Axis
link	src/org/math/plot/plots/StaircasePlot.java	/^	public boolean link = true;$/;"	f	class:StaircasePlot
linkedLegendPanel	src/org/math/plot/canvas/PlotCanvas.java	/^    public LegendPanel linkedLegendPanel;$/;"	f	class:PlotCanvas
linkminmax	src/org/math/plot/DataSelectPanel.java	/^        JCheckBox linkminmax;$/;"	f	class:DataSelectPanel.ParameterRow
linkminmax	src/org/math/plot/DataSelectTable.java	/^		JCheckBox linkminmax;$/;"	f	class:DataSelectTable.ParameterRow
list	src/org/math/plot/DataSelectPanel.java	/^        JList list;$/;"	f	class:DataSelectPanel.ParameterRow
list	src/org/math/plot/DataSelectTable.java	/^		JList list;$/;"	f	class:DataSelectTable.ParameterRow
lock	src/spiking/controllers/node/NodeThread.java	/^	private Lock lock = new ReentrantLock();$/;"	f	class:NodeThread	file:
lock	src/utils/statistics/StatisticsCollector.java	/^	private Lock lock = new ReentrantLock();$/;"	f	class:StatisticsCollector	file:
log	src/org/math/plot/utils/FastMath.java	/^    public static double log(double value) {$/;"	m	class:FastMath
log10	src/org/math/plot/plotObjects/Axis.java	/^        public final double log10 = FastMath.log(10);$/;"	f	class:Axis
log10	src/org/math/plot/utils/FastMath.java	/^    public static double log10(double value) {$/;"	m	class:FastMath
log1p	src/org/math/plot/utils/FastMath.java	/^    public static double log1p(double value) {$/;"	m	class:FastMath
log2	src/org/math/plot/utils/FastMath.java	/^    public static int log2(int value) {$/;"	m	class:FastMath
log2	src/org/math/plot/utils/FastMath.java	/^    public static int log2(long value) {$/;"	m	class:FastMath
log2	src/org/math/plot/utils/NumbersUtils.java	/^    public static int log2(int value) {$/;"	m	class:NumbersUtils
log2	src/org/math/plot/utils/NumbersUtils.java	/^    public static int log2(long value) {$/;"	m	class:NumbersUtils
logQuick	src/org/math/plot/utils/FastMath.java	/^    public static double logQuick(double value) {$/;"	m	class:FastMath
logXInvTab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] logXInvTab = new double[LOG_TAB_SIZE];$/;"	f	class:FastMath	file:
logXLogTab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] logXLogTab = new double[LOG_TAB_SIZE];$/;"	f	class:FastMath	file:
logXTab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] logXTab = new double[LOG_TAB_SIZE];$/;"	f	class:FastMath	file:
log_check	src/org/math/plot/components/ScalesFrame.java	/^        private JRadioButton log_check = new JRadioButton("Logarithmic");$/;"	f	class:ScalesFrame.ScalePanel	file:
longMaskLSBits0	src/org/math/plot/utils/NumbersUtils.java	/^    public static long longMaskLSBits0(int bitSize) {$/;"	m	class:NumbersUtils
longMaskLSBits1	src/org/math/plot/utils/NumbersUtils.java	/^    public static long longMaskLSBits1(int bitSize) {$/;"	m	class:NumbersUtils
longMaskMSBits0	src/org/math/plot/utils/NumbersUtils.java	/^    public static long longMaskMSBits0(int bitSize) {$/;"	m	class:NumbersUtils
longMaskMSBits1	src/org/math/plot/utils/NumbersUtils.java	/^    public static long longMaskMSBits1(int bitSize) {$/;"	m	class:NumbersUtils
ltdFlag	src/spiking/node/plasticity/Afferent.java	/^	private Boolean ltdFlag = true;$/;"	f	class:Afferent	file:
ltpFlag	src/spiking/node/plasticity/Afferent.java	/^	private Boolean ltpFlag = true;$/;"	f	class:Afferent	file:
madel	src/spiking/node/SynapsesManager.java	/^	public Double madel =8.0;$/;"	f	class:SynapsesManager
main	src/connectivity/nodes/ConnectivityPackageManager.java	/^	public static void main(String[] args) {$/;"	m	class:ConnectivityPackageManager
main	src/connectivity/nodes/Node.java	/^	public static void main(String[] args) {$/;"	m	class:Node
main	src/org/math/io/files/ASCIIFile.java	/^    public static void main(String[] args) {$/;"	m	class:ASCIIFile
main	src/org/math/io/files/BinaryFile.java	/^    public static void main(String[] args) {$/;"	m	class:BinaryFile
main	src/org/math/plot/DataSelectPanel.java	/^    public static void main(String[] args) {$/;"	m	class:DataSelectPanel
main	src/org/math/plot/DataSelectTable.java	/^	public static void main(String[] args) {$/;"	m	class:DataSelectTable
main	src/org/math/plot/PlotPanel.java	/^    public static void main(String[] args) {$/;"	m	class:PlotPanel
main	src/org/math/plot/canvas/Plot2DCanvas.java	/^	public static void main(String[] args) {$/;"	m	class:Plot2DCanvas
main	src/org/math/plot/plotObjects/Axis.java	/^	public static void main(String[] args) {$/;"	m	class:Axis
main	src/org/math/plot/plotObjects/BaseLabel.java	/^	public static void main(String[] args) {$/;"	m	class:BaseLabel
main	src/org/math/plot/plotObjects/RasterImage.java	/^	public static void main(String[] args) {$/;"	m	class:RasterImage
main	src/org/math/plot/plots/BarPlot.java	/^	public static void main(String[] args) {$/;"	m	class:BarPlot
main	src/org/math/plot/plots/BoxPlot3D.java	/^    public static void main(String[] args) {$/;"	m	class:BoxPlot3D
main	src/org/math/plot/plots/CloudPlot2D.java	/^    public static void main(String[] args) {$/;"	m	class:CloudPlot2D
main	src/org/math/plot/plots/CloudPlot3D.java	/^    public static void main(String[] args) {$/;"	m	class:CloudPlot3D
main	src/org/math/plot/plots/DensityLayerPlot.java	/^	public static void main(String[] args) {$/;"	m	class:DensityLayerPlot
main	src/org/math/plot/plots/GaussianDensityLayerPlot.java	/^	public static void main(String[] args) {$/;"	m	class:GaussianDensityLayerPlot
main	src/org/math/plot/plots/GridPlot3D.java	/^    public static void main(String[] args) {$/;"	m	class:GridPlot3D
main	src/org/math/plot/plots/HistogramPlot2D.java	/^    public static void main(String[] args) {$/;"	m	class:HistogramPlot2D
main	src/org/math/plot/plots/HistogramPlot3D.java	/^    public static void main(String[] args) {$/;"	m	class:HistogramPlot3D
main	src/org/math/plot/plots/LinePlot.java	/^	public static void main(String[] args) {$/;"	m	class:LinePlot
main	src/org/math/plot/plots/QuantileLayerPlot.java	/^	public static void main(String[] args) {$/;"	m	class:QuantileLayerPlot
main	src/org/math/plot/plots/ScatterPlot.java	/^    public static void main(String[] args) {$/;"	m	class:ScatterPlot
main	src/org/math/plot/plots/StaircasePlot.java	/^	public static void main(String[] args) {$/;"	m	class:StaircasePlot
main	src/org/math/plot/plots/VectorLayerPlot.java	/^	public static void main(String[] args) {$/;"	m	class:VectorLayerPlot
main	src/spiking/simulator/SpikingNeuralSimulator.java	/^	public static void main(String[] args) {		$/;"	m	class:SpikingNeuralSimulator
main	src/utils/configuration/SpikingConfigManager.java	/^	public static void main(String[] args) {$/;"	m	class:SpikingConfigManager
main	src/utils/math/FastMath.java	/^	public static void main(String[] args) {$/;"	m	class:FastMath
main	src/utils/tools/IntegerCouple.java	/^	public static void main(String[] args) {$/;"	m	class:IntegerCouple
main	src/utils/tools/LongCouple.java	/^	public static void main(String[] args) {$/;"	m	class:LongCouple
main	src/utils/tools/NiceQueue.java	/^    public static void main(String[] args) {$/;"	m	class:NiceQueue
main	src/utils/tools/Shuffler.java	/^	public static void main(String[] args) {$/;"	m	class:Shuffler
main_data_constant	src/org/math/plot/plots/QuantileLayerPlot.java	/^	double main_data_constant = 0;$/;"	f	class:QuantileLayerPlot
makeCsv	src/utils/statistics/StatisticsCollector.java	/^	public void makeCsv(String filename){$/;"	m	class:StatisticsCollector
makeMatlabCsv	src/utils/statistics/StatisticsCollector.java	/^	private void makeMatlabCsv(){$/;"	m	class:StatisticsCollector	file:
makeNeuronFire	src/spiking/controllers/node/NodeThread.java	/^	private void makeNeuronFire(Long firingNeuronId, Double currentTime){$/;"	m	class:NodeThread	file:
mapData	src/org/math/plot/PlotPanel.java	/^    public double[][] mapData(Object[][] stringdata) {$/;"	m	class:PlotPanel
mapData	src/org/math/plot/canvas/PlotCanvas.java	/^    public double[][] mapData(Object[][] data) {$/;"	m	class:PlotCanvas
mapStringArray	src/org/math/plot/utils/Array.java	/^    private static HashMap<String, Double> mapStringArray(double minvalue, double step, List<String> array) {$/;"	m	class:Array	file:
mapStringArray	src/org/math/plot/utils/Array.java	/^    public static HashMap<String, Double> mapStringArray(List<String> array) {$/;"	m	class:Array
mapset	src/org/math/plot/canvas/PlotCanvas.java	/^    boolean mapset = false;$/;"	f	class:PlotCanvas
matlab	src/utils/statistics/StatisticsCollector.java	/^	private volatile Boolean matlab=false;$/;"	f	class:StatisticsCollector	file:
max	src/org/math/plot/DataSelectPanel.java	/^        JSlider min, max;$/;"	f	class:DataSelectPanel.ParameterRow
max	src/org/math/plot/DataSelectTable.java	/^		JSlider min, max;$/;"	f	class:DataSelectTable.ParameterRow
max	src/org/math/plot/components/ScalesFrame.java	/^        private double max;$/;"	f	class:ScalesFrame.ScalePanel	file:
max	src/org/math/plot/utils/Array.java	/^    public static double max(double... M) {$/;"	m	class:Array
max	src/org/math/plot/utils/Array.java	/^    public static double[] max(double[][] M) {$/;"	m	class:Array
max	src/org/math/plot/utils/Array.java	/^    public static int max(int... M) {$/;"	m	class:Array
max	src/org/math/plot/utils/FastMath.java	/^    public static double max(double a, double b) {$/;"	m	class:FastMath
max	src/org/math/plot/utils/FastMath.java	/^    public static float max(float a, float b) {$/;"	m	class:FastMath
max	src/org/math/plot/utils/FastMath.java	/^    public static int max(int a, int b) {$/;"	m	class:FastMath
max	src/org/math/plot/utils/FastMath.java	/^    public static long max(long a, long b) {$/;"	m	class:FastMath
maxAmplitude	src/connectivity/conn_package/PackageReader.java	/^	private Double maxAmplitude=MAX_AMPLITUDE_DEF;$/;"	f	class:PackageReader	file:
maxHeight	src/org/math/plot/components/LegendPanel.java	/^    private int maxHeight;$/;"	f	class:LegendPanel	file:
maxIndex	src/org/math/plot/utils/Array.java	/^    public static int maxIndex(double... M) {$/;"	m	class:Array
maxIndex	src/org/math/plot/utils/Array.java	/^    public static int[] maxIndex(double[][] M) {$/;"	m	class:Array
maxN	src/spiking/node/NodesManager.java	/^	private Long maxN=0l;$/;"	f	class:NodesManager	file:
maxN	src/spiking/node/NodesManager.java~	/^	private Long maxN=0l;$/;"	f	class:NodesManager	file:
maxN	src/utils/statistics/CollectedFire.java	/^	private Long maxN; $/;"	f	class:CollectedFire	file:
maxNe_xn_ratio	src/connectivity/conn_package/PackageReader.java	/^	private Double maxNe_xn_ratio=MAX_NE_EN_RATIO_DEF;$/;"	f	class:PackageReader	file:
maxNe_xn_ratio	src/utils/statistics/StatisticsCollector.java	/^	private volatile Double maxNe_xn_ratio;$/;"	f	class:StatisticsCollector	file:
maxScreenRatio	src/org/math/plot/render/Projection.java	/^    public double[] maxScreenRatio = new double[]{1, 1};$/;"	f	class:Projection
maxSignedIntForBitSize	src/org/math/plot/utils/NumbersUtils.java	/^    public static int maxSignedIntForBitSize(int bitSize) {$/;"	m	class:NumbersUtils
maxSignedIntForBitSize_noCheck	src/org/math/plot/utils/NumbersUtils.java	/^    private static int maxSignedIntForBitSize_noCheck(int bitSize) {$/;"	m	class:NumbersUtils	file:
maxSignedLongForBitSize	src/org/math/plot/utils/NumbersUtils.java	/^    public static long maxSignedLongForBitSize(int bitSize) {$/;"	m	class:NumbersUtils
maxSignedLongForBitSize_noCheck	src/org/math/plot/utils/NumbersUtils.java	/^    private static long maxSignedLongForBitSize_noCheck(int bitSize) {$/;"	m	class:NumbersUtils	file:
maxUnsignedIntForBitSize	src/org/math/plot/utils/NumbersUtils.java	/^    public static int maxUnsignedIntForBitSize(int bitSize) {$/;"	m	class:NumbersUtils
maxUnsignedLongForBitSize	src/org/math/plot/utils/NumbersUtils.java	/^    public static long maxUnsignedLongForBitSize(int bitSize) {$/;"	m	class:NumbersUtils
maxWidth	src/org/math/plot/components/LegendPanel.java	/^    private int maxWidth;$/;"	f	class:LegendPanel	file:
max_field	src/org/math/plot/components/ScalesFrame.java	/^        private JTextField max_field = new JTextField();$/;"	f	class:ScalesFrame.ScalePanel	file:
max_label	src/org/math/plot/components/ScalesFrame.java	/^        private JLabel max_label = new JLabel("Max");$/;"	f	class:ScalesFrame.ScalePanel	file:
meanLow	src/org/math/plot/utils/NumbersUtils.java	/^    public static int meanLow(int a, int b) {$/;"	m	class:NumbersUtils
meanLow	src/org/math/plot/utils/NumbersUtils.java	/^    public static long meanLow(long a, long b) {$/;"	m	class:NumbersUtils
meanSml	src/org/math/plot/utils/NumbersUtils.java	/^    public static int meanSml(int a, int b) {$/;"	m	class:NumbersUtils
meanSml	src/org/math/plot/utils/NumbersUtils.java	/^    public static long meanSml(long a, long b) {$/;"	m	class:NumbersUtils
merge	src/org/math/plot/utils/Array.java	/^    public static double[] merge(double[]... x) {$/;"	m	class:Array
mergeColumns	src/org/math/plot/utils/Array.java	/^    public static double[][] mergeColumns(double[]... x) {$/;"	m	class:Array
mergeRows	src/org/math/plot/utils/Array.java	/^    public static double[][] mergeRows(double[]... x) {$/;"	m	class:Array
min	src/org/math/plot/DataSelectPanel.java	/^        JSlider min, max;$/;"	f	class:DataSelectPanel.ParameterRow
min	src/org/math/plot/DataSelectTable.java	/^		JSlider min, max;$/;"	f	class:DataSelectTable.ParameterRow
min	src/org/math/plot/components/ScalesFrame.java	/^        private double min;$/;"	f	class:ScalesFrame.ScalePanel	file:
min	src/org/math/plot/utils/Array.java	/^    public static double min(double... M) {$/;"	m	class:Array
min	src/org/math/plot/utils/Array.java	/^    public static double[] min(double[][] M) {$/;"	m	class:Array
min	src/org/math/plot/utils/Array.java	/^    public static int min(int... M) {$/;"	m	class:Array
min	src/org/math/plot/utils/FastMath.java	/^    public static double min(double a, double b) {$/;"	m	class:FastMath
min	src/org/math/plot/utils/FastMath.java	/^    public static float min(float a, float b) {$/;"	m	class:FastMath
min	src/org/math/plot/utils/FastMath.java	/^    public static int min(int a, int b) {$/;"	m	class:FastMath
min	src/org/math/plot/utils/FastMath.java	/^    public static long min(long a, long b) {$/;"	m	class:FastMath
min	src/utils/tools/NiceQueue.java	/^	public NiceNode min(){$/;"	m	class:NiceQueue
minAmplitude	src/connectivity/conn_package/PackageReader.java	/^	private Double minAmplitude=MIN_AMPLITUDE_DEF;$/;"	f	class:PackageReader	file:
minAxDelay	src/spiking/node/SynapsesManager.java	/^	private Double minAxDelay = Double.MAX_VALUE;$/;"	f	class:SynapsesManager	file:
minIndex	src/org/math/plot/utils/Array.java	/^    public static int minIndex(double... M) {$/;"	m	class:Array
minIndex	src/org/math/plot/utils/Array.java	/^    public static int[] minIndex(double[][] M) {$/;"	m	class:Array
minMissedAxonalDelay	src/utils/statistics/StatisticsCollector.java	/^	private volatile Double minMissedAxonalDelay = Double.MAX_VALUE;$/;"	f	class:StatisticsCollector	file:
minNe_xn_ratio	src/connectivity/conn_package/PackageReader.java	/^	private Double minNe_xn_ratio=MIN_NE_EN_RATIO_DEF;$/;"	f	class:PackageReader	file:
minNe_xn_ratio	src/utils/statistics/StatisticsCollector.java	/^	private volatile Double minNe_xn_ratio;$/;"	f	class:StatisticsCollector	file:
minQueue	src/spiking/simulator/SpikingNeuralSimulator.java	/^	NiceQueue minQueue=null;$/;"	f	class:SpikingNeuralSimulator
minQueuesValue	src/spiking/simulator/SpikingNeuralSimulator.java	/^	Double minQueuesValue = Double.MAX_VALUE;$/;"	f	class:SpikingNeuralSimulator
minScreenRatio	src/org/math/plot/render/Projection.java	/^    public double[] minScreenRatio = new double[]{.01, .01};$/;"	f	class:Projection
minSignedIntForBitSize	src/org/math/plot/utils/NumbersUtils.java	/^    public static int minSignedIntForBitSize(int bitSize) {$/;"	m	class:NumbersUtils
minSignedIntForBitSize_noCheck	src/org/math/plot/utils/NumbersUtils.java	/^    private static int minSignedIntForBitSize_noCheck(int bitSize) {$/;"	m	class:NumbersUtils	file:
minSignedLongForBitSize	src/org/math/plot/utils/NumbersUtils.java	/^    public static long minSignedLongForBitSize(int bitSize) {$/;"	m	class:NumbersUtils
minSignedLongForBitSize_noCheck	src/org/math/plot/utils/NumbersUtils.java	/^    private static long minSignedLongForBitSize_noCheck(int bitSize) {$/;"	m	class:NumbersUtils	file:
minTractLength	src/spiking/node/NodesManager.java	/^	private Double minTractLength=MAX_TRACT_LENGTH;$/;"	f	class:NodesManager	file:
minTractLength	src/spiking/node/NodesManager.java~	/^	private Double minTractLength=MAX_TRACT_LENGTH;$/;"	f	class:NodesManager	file:
min_field	src/org/math/plot/components/ScalesFrame.java	/^        private JTextField min_field = new JTextField();$/;"	f	class:ScalesFrame.ScalePanel	file:
min_label	src/org/math/plot/components/ScalesFrame.java	/^        private JLabel min_label = new JLabel("Min");$/;"	f	class:ScalesFrame.ScalePanel	file:
minusBounded	src/org/math/plot/utils/NumbersUtils.java	/^    public static int minusBounded(int a, int b) {$/;"	m	class:NumbersUtils
minusBounded	src/org/math/plot/utils/NumbersUtils.java	/^    public static long minusBounded(long a, long b) {$/;"	m	class:NumbersUtils
minusExact	src/org/math/plot/utils/NumbersUtils.java	/^    public static int minusExact(int a, int b) {$/;"	m	class:NumbersUtils
minusExact	src/org/math/plot/utils/NumbersUtils.java	/^    public static long minusExact(long a, long b) {$/;"	m	class:NumbersUtils
missedFires	src/utils/statistics/StatisticsCollector.java	/^	public  volatile Long missedFires=0l;$/;"	f	class:StatisticsCollector
model	src/org/math/plot/MatrixTablePanel.java	/^    private TableModel model;$/;"	f	class:MatrixTablePanel	file:
moduloSignedPowerOfTwo	src/org/math/plot/utils/NumbersUtils.java	/^    public static int moduloSignedPowerOfTwo(int value, int spot) {$/;"	m	class:NumbersUtils
moduloSignedPowerOfTwo	src/org/math/plot/utils/NumbersUtils.java	/^    public static long moduloSignedPowerOfTwo(long value, long spot) {$/;"	m	class:NumbersUtils
mouseClick	src/org/math/plot/canvas/PlotCanvas.java	/^    protected int[] mouseClick = new int[2];$/;"	f	class:PlotCanvas
mouseClicked	src/org/math/plot/canvas/PlotCanvas.java	/^    public void mouseClicked(MouseEvent e) {$/;"	m	class:PlotCanvas
mouseCurent	src/org/math/plot/canvas/PlotCanvas.java	/^    protected int[] mouseCurent = new int[2];$/;"	f	class:PlotCanvas
mouseDragged	src/org/math/plot/canvas/Plot3DCanvas.java	/^    public void mouseDragged(MouseEvent e) {$/;"	m	class:Plot3DCanvas
mouseDragged	src/org/math/plot/canvas/PlotCanvas.java	/^    public void mouseDragged(MouseEvent e) {$/;"	m	class:PlotCanvas
mouseEntered	src/org/math/plot/canvas/PlotCanvas.java	/^    public void mouseEntered(MouseEvent e) {$/;"	m	class:PlotCanvas
mouseExited	src/org/math/plot/canvas/PlotCanvas.java	/^    public void mouseExited(MouseEvent e) {$/;"	m	class:PlotCanvas
mouseMoved	src/org/math/plot/canvas/PlotCanvas.java	/^    public void mouseMoved(MouseEvent e) {$/;"	m	class:PlotCanvas
mousePressed	src/org/math/plot/canvas/PlotCanvas.java	/^    public void mousePressed(MouseEvent e) {$/;"	m	class:PlotCanvas
mouseReleased	src/org/math/plot/canvas/PlotCanvas.java	/^    public void mouseReleased(MouseEvent e) {$/;"	m	class:PlotCanvas
mouseWheelMoved	src/org/math/plot/canvas/PlotCanvas.java	/^    public void mouseWheelMoved(MouseWheelEvent e) {$/;"	m	class:PlotCanvas
mu_lambda	src/spiking/node/NodesInterconnection.java	/^	private Double mu_lambda= Constants.LENGTH_DEF_VAL;$/;"	f	class:NodesInterconnection	file:
mu_omega	src/spiking/node/NodesInterconnection.java	/^	private Double mu_omega=1.0;$/;"	f	class:NodesInterconnection	file:
mu_w	src/spiking/node/Synapse.java	/^	private Double mu_w;$/;"	f	class:Synapse	file:
mu_w_exc	src/spiking/node/Node.java	/^	private Double mu_w_exc;$/;"	f	class:Node	file:
mu_w_exc	src/utils/configuration/NodeCfg.java	/^	private Double mu_w_exc;$/;"	f	class:NodeCfg	file:
mu_w_inh	src/spiking/node/Node.java	/^	private Double mu_w_inh;$/;"	f	class:Node	file:
mu_w_inh	src/utils/configuration/NodeCfg.java	/^	private Double mu_w_inh;$/;"	f	class:NodeCfg	file:
multiplyBounded	src/org/math/plot/utils/FastMath.java	/^    public static int multiplyBounded(int a, int b) {$/;"	m	class:FastMath
multiplyBounded	src/org/math/plot/utils/FastMath.java	/^    public static long multiplyBounded(long a, long b) {$/;"	m	class:FastMath
multiplyExact	src/org/math/plot/utils/FastMath.java	/^    public static int multiplyExact(int a, int b) {$/;"	m	class:FastMath
multiplyExact	src/org/math/plot/utils/FastMath.java	/^    public static long multiplyExact(long a, long b) {$/;"	m	class:FastMath
n	src/spiking/controllers/node/NodeThread.java	/^	private Node n;$/;"	f	class:NodeThread	file:
n	src/spiking/node/Node.java	/^	private Long n=100l;$/;"	f	class:Node	file:
n	src/spiking/node/NodesManager.java	/^	private Long n=0l;$/;"	f	class:NodesManager	file:
n	src/spiking/node/NodesManager.java~	/^	private Long n=0l;$/;"	f	class:NodesManager	file:
n	src/spiking/node/SynapsesManager.java	/^	private Node n;$/;"	f	class:SynapsesManager	file:
n	src/spiking/node/external_inputs/ExternalInput.java	/^	private Node n;$/;"	f	class:ExternalInput	file:
n	src/spiking/node/neuron/NodeNeuronsManager.java	/^	private Node n;$/;"	f	class:NodeNeuronsManager	file:
n	src/utils/configuration/NodeCfg.java	/^	private Long n;$/;"	f	class:NodeCfg	file:
nBins	src/spiking/node/external_inputs/ExternalInput.java	/^	private Integer nBins=fireDuration\/timeStep;								\/\/number of bins$/;"	f	class:ExternalInput	file:
nMan	src/spiking/controllers/node/NodeThread.java	/^	private NodesManager nMan;$/;"	f	class:NodeThread	file:
nMan	src/spiking/simulator/SpikingNeuralSimulator.java	/^	private NodesManager nMan;$/;"	f	class:SpikingNeuralSimulator	file:
name	src/org/math/plot/DataSelectPanel.java	/^        JLabel name;$/;"	f	class:DataSelectPanel.ParameterRow
name	src/org/math/plot/components/LegendPanel.java	/^        JLabel name;$/;"	f	class:LegendPanel.Legend
name	src/org/math/plot/plots/Plot.java	/^    public String name;$/;"	f	class:Plot
negHalfWidth	src/org/math/plot/utils/NumbersUtils.java	/^    public static int negHalfWidth(int min, int max) {$/;"	m	class:NumbersUtils
negHalfWidth	src/org/math/plot/utils/NumbersUtils.java	/^    public static long negHalfWidth(long min, long max) {$/;"	m	class:NumbersUtils
neuronStates	src/spiking/node/neuron/NodeNeuronsManager.java	/^	private HashMap<Long, Double> neuronStates;$/;"	f	class:NodeNeuronsManager	file:
neuron_manager	src/utils/configuration/NodeCfg.java	/^	private NeuManCfg neuron_manager;$/;"	f	class:NodeCfg	file:
newBurns	src/utils/statistics/StatisticsCollector.java	/^	private volatile ArrayList<CollectedBurn> newBurns=new ArrayList<CollectedBurn>();$/;"	f	class:StatisticsCollector	file:
newFires	src/utils/statistics/StatisticsCollector.java	/^	private volatile ArrayList<CollectedFire> newFires=new ArrayList<CollectedFire>();$/;"	f	class:StatisticsCollector	file:
newTimeSplitCond	src/spiking/controllers/node/NodeThread.java	/^	private Condition newTimeSplitCond = lock.newCondition();$/;"	f	class:NodeThread	file:
new_event	src/utils/statistics/StatisticsCollector.java	/^	private void new_event() {$/;"	m	class:StatisticsCollector	file:
nextAfter	src/org/math/plot/utils/FastMath.java	/^    public static double nextAfter(double start, double direction) {$/;"	m	class:FastMath
nextAfter	src/org/math/plot/utils/FastMath.java	/^    public static float nextAfter(float start, float direction) {$/;"	m	class:FastMath
nextUp	src/org/math/plot/utils/FastMath.java	/^    public static double nextUp(double d) {$/;"	m	class:FastMath
nextUp	src/org/math/plot/utils/FastMath.java	/^    public static float nextUp(float f) {$/;"	m	class:FastMath
nnMan	src/spiking/controllers/node/NodeThread.java	/^	private NodeNeuronsManager nnMan;$/;"	f	class:NodeThread	file:
node	src/utils/configuration/SpikingSimulatorCfg.java	/^	private ArrayList<NodeCfg> node = new ArrayList<NodeCfg>();$/;"	f	class:SpikingSimulatorCfg	file:
nodeDbFile	src/spiking/node/Node.java	/^	private File nodeDbFile;$/;"	f	class:Node	file:
nodeInit	src/spiking/node/Node.java	/^	public void nodeInit(){$/;"	m	class:Node
nodeThreads	src/spiking/node/NodesManager.java	/^	private ArrayList<NodeThread> nodeThreads = new ArrayList<NodeThread>();$/;"	f	class:NodesManager	file:
nodeThreads	src/spiking/node/NodesManager.java~	/^	private ArrayList<NodeThread> nodeThreads = new ArrayList<NodeThread>();$/;"	f	class:NodesManager	file:
nodes	src/connectivity/nodes/ConnectivityPackageManager.java	/^	private ArrayList<Node> nodes = new ArrayList<>();$/;"	f	class:ConnectivityPackageManager	file:
nodesConnections	src/spiking/node/NodesManager.java	/^	private HashMap<IntegerCouple, NodesInterconnection> nodesConnections = new HashMap<IntegerCouple, NodesInterconnection>();$/;"	f	class:NodesManager	file:
nodesConnections	src/spiking/node/NodesManager.java~	/^	private HashMap<IntegerCouple, NodesInterconnection> nodesConnections = new HashMap<IntegerCouple, NodesInterconnection>();$/;"	f	class:NodesManager	file:
nodesHash	src/utils/tools/NiceQueue.java	/^    private HashMap<Long, NiceNode> nodesHash;$/;"	f	class:NiceQueue	file:
nonote	src/org/math/plot/components/LegendPanel.java	/^    public void nonote(int i) {$/;"	m	class:LegendPanel
normalizeMinusHalfPiHalfPi	src/org/math/plot/utils/FastMath.java	/^    public static double normalizeMinusHalfPiHalfPi(double angle) {$/;"	m	class:FastMath
normalizeMinusHalfPiHalfPiFast	src/org/math/plot/utils/FastMath.java	/^    public static double normalizeMinusHalfPiHalfPiFast(double angle) {$/;"	m	class:FastMath
normalizeMinusPiPi	src/org/math/plot/utils/FastMath.java	/^    public static double normalizeMinusPiPi(double angle) {$/;"	m	class:FastMath
normalizeMinusPiPiFast	src/org/math/plot/utils/FastMath.java	/^    public static double normalizeMinusPiPiFast(double angle) {$/;"	m	class:FastMath
normalizeZeroTwoPi	src/org/math/plot/utils/FastMath.java	/^    public static double normalizeZeroTwoPi(double angle) {$/;"	m	class:FastMath
normalizeZeroTwoPiFast	src/org/math/plot/utils/FastMath.java	/^    public static double normalizeZeroTwoPiFast(double angle) {$/;"	m	class:FastMath
note	src/org/math/plot/components/LegendPanel.java	/^    public void note(int i) {$/;"	m	class:LegendPanel
note	src/org/math/plot/plotObjects/Noteable.java	/^	public void note(AbstractDrawer draw);$/;"	m	interface:Noteable
note	src/org/math/plot/plots/Plot.java	/^    public void note(AbstractDrawer draw) {$/;"	m	class:Plot
noteCoord	src/org/math/plot/plots/Plot.java	/^    public void noteCoord(AbstractDrawer draw, double[] coordNoted) {$/;"	m	class:Plot
noteCoord	src/org/math/plot/plots/ScatterPlot.java	/^    public void noteCoord(AbstractDrawer draw, double[] coordNoted) {$/;"	m	class:ScatterPlot
note_nonote	src/org/math/plot/components/LegendPanel.java	/^        public void note_nonote() {$/;"	m	class:LegendPanel.Legend
note_precision	src/org/math/plot/plotObjects/Axis.java	/^	protected int note_precision = 5;$/;"	f	class:Axis
note_precision	src/org/math/plot/plots/Plot.java	/^    public int note_precision = 5;$/;"	f	class:Plot
noted	src/org/math/plot/plots/Plot.java	/^    public boolean noted = false;$/;"	f	class:Plot
numAxe	src/org/math/plot/components/ScalesFrame.java	/^        private int numAxe;$/;"	f	class:ScalesFrame.ScalePanel	file:
objects	src/org/math/plot/canvas/PlotCanvas.java	/^    public LinkedList<Plotable> objects;$/;"	f	class:PlotCanvas
offsetCenter_perWidth	src/org/math/plot/plots/HistogramPlot2D.java	/^    double offsetCenter_perWidth;$/;"	f	class:HistogramPlot2D
oldPostSynapticWeight	src/spiking/node/plasticity/Afferent.java	/^	private Double oldPostSynapticWeight;$/;"	f	class:Afferent	file:
one	src/org/math/plot/utils/Array.java	/^    public static double[] one(int m) {$/;"	m	class:Array
one	src/org/math/plot/utils/Array.java	/^    public static double[] one(int m, double c) {$/;"	m	class:Array
one	src/org/math/plot/utils/Array.java	/^    public static double[][] one(int m, int n) {$/;"	m	class:Array
one	src/org/math/plot/utils/Array.java	/^    public static double[][] one(int m, int n, double c) {$/;"	m	class:Array
order	src/org/math/plot/DataSelectPanel.java	/^            private int[] order;$/;"	f	class:DataSelectPanel.ParameterRow.Sorting	file:
org.math.io	src/org/math/io/ClipBoardPrintable.java	/^package org.math.io;$/;"	p
org.math.io	src/org/math/io/FilePrintable.java	/^package org.math.io;$/;"	p
org.math.io	src/org/math/io/StringPrintable.java	/^package org.math.io;$/;"	p
org.math.io.files	src/org/math/io/files/ASCIIFile.java	/^package org.math.io.files;$/;"	p
org.math.io.files	src/org/math/io/files/BinaryFile.java	/^package org.math.io.files;$/;"	p
org.math.io.files	src/org/math/io/files/DataFile.java	/^package org.math.io.files;$/;"	p
org.math.io.littleendian	src/org/math/io/littleendian/LEDataInputStream.java	/^package org.math.io.littleendian;$/;"	p
org.math.io.littleendian	src/org/math/io/littleendian/LEDataOutputStream.java	/^package org.math.io.littleendian;$/;"	p
org.math.io.littleendian	src/org/math/io/littleendian/LERandomAccessFile.java	/^package org.math.io.littleendian;$/;"	p
org.math.io.parser	src/org/math/io/parser/ArrayString.java	/^package org.math.io.parser;$/;"	p
org.math.io.stream	src/org/math/io/stream/BinaryInputStream.java	/^package org.math.io.stream;$/;"	p
org.math.io.stream	src/org/math/io/stream/BinaryOutputStream.java	/^package org.math.io.stream;$/;"	p
org.math.plot	src/org/math/plot/DataPanel.java	/^package org.math.plot;$/;"	p
org.math.plot	src/org/math/plot/DataSelectPanel.java	/^package org.math.plot;$/;"	p
org.math.plot	src/org/math/plot/DataSelectTable.java	/^package org.math.plot;$/;"	p
org.math.plot	src/org/math/plot/FrameView.java	/^package org.math.plot;$/;"	p
org.math.plot	src/org/math/plot/MatrixTablePanel.java	/^package org.math.plot;$/;"	p
org.math.plot	src/org/math/plot/ParametersPanel.java	/^package org.math.plot;$/;"	p
org.math.plot	src/org/math/plot/Plot2DPanel.java	/^package org.math.plot;$/;"	p
org.math.plot	src/org/math/plot/Plot3DPanel.java	/^package org.math.plot;$/;"	p
org.math.plot	src/org/math/plot/PlotPanel.java	/^package org.math.plot;$/;"	p
org.math.plot.canvas	src/org/math/plot/canvas/Plot2DCanvas.java	/^package org.math.plot.canvas;$/;"	p
org.math.plot.canvas	src/org/math/plot/canvas/Plot3DCanvas.java	/^package org.math.plot.canvas;$/;"	p
org.math.plot.canvas	src/org/math/plot/canvas/PlotCanvas.java	/^package org.math.plot.canvas;$/;"	p
org.math.plot.components	src/org/math/plot/components/DataFrame.java	/^package org.math.plot.components;$/;"	p
org.math.plot.components	src/org/math/plot/components/DataToolBar.java	/^package org.math.plot.components;$/;"	p
org.math.plot.components	src/org/math/plot/components/DatasFrame.java	/^package org.math.plot.components;$/;"	p
org.math.plot.components	src/org/math/plot/components/LegendPanel.java	/^package org.math.plot.components;$/;"	p
org.math.plot.components	src/org/math/plot/components/PlotToolBar.java	/^package org.math.plot.components;$/;"	p
org.math.plot.components	src/org/math/plot/components/ScalesFrame.java	/^package org.math.plot.components;$/;"	p
org.math.plot.plotObjects	src/org/math/plot/plotObjects/Axis.java	/^package org.math.plot.plotObjects;$/;"	p
org.math.plot.plotObjects	src/org/math/plot/plotObjects/Base.java	/^package org.math.plot.plotObjects;$/;"	p
org.math.plot.plotObjects	src/org/math/plot/plotObjects/BaseDependant.java	/^package org.math.plot.plotObjects;$/;"	p
org.math.plot.plotObjects	src/org/math/plot/plotObjects/BaseLabel.java	/^package org.math.plot.plotObjects;$/;"	p
org.math.plot.plotObjects	src/org/math/plot/plotObjects/BaseLine.java	/^package org.math.plot.plotObjects;$/;"	p
org.math.plot.plotObjects	src/org/math/plot/plotObjects/BasePlot.java	/^package org.math.plot.plotObjects;$/;"	p
org.math.plot.plotObjects	src/org/math/plot/plotObjects/Editable.java	/^package org.math.plot.plotObjects;$/;"	p
org.math.plot.plotObjects	src/org/math/plot/plotObjects/Label.java	/^package org.math.plot.plotObjects;$/;"	p
org.math.plot.plotObjects	src/org/math/plot/plotObjects/Line.java	/^package org.math.plot.plotObjects;$/;"	p
org.math.plot.plotObjects	src/org/math/plot/plotObjects/Noteable.java	/^package org.math.plot.plotObjects;$/;"	p
org.math.plot.plotObjects	src/org/math/plot/plotObjects/PaintImage.java	/^package org.math.plot.plotObjects;$/;"	p
org.math.plot.plotObjects	src/org/math/plot/plotObjects/Plotable.java	/^package org.math.plot.plotObjects;$/;"	p
org.math.plot.plotObjects	src/org/math/plot/plotObjects/RasterImage.java	/^package org.math.plot.plotObjects;$/;"	p
org.math.plot.plots	src/org/math/plot/plots/BarPlot.java	/^package org.math.plot.plots;$/;"	p
org.math.plot.plots	src/org/math/plot/plots/BoxPlot2D.java	/^package org.math.plot.plots;$/;"	p
org.math.plot.plots	src/org/math/plot/plots/BoxPlot3D.java	/^package org.math.plot.plots;$/;"	p
org.math.plot.plots	src/org/math/plot/plots/CloudPlot2D.java	/^package org.math.plot.plots;$/;"	p
org.math.plot.plots	src/org/math/plot/plots/CloudPlot3D.java	/^package org.math.plot.plots;$/;"	p
org.math.plot.plots	src/org/math/plot/plots/DensityLayerPlot.java	/^package org.math.plot.plots;$/;"	p
org.math.plot.plots	src/org/math/plot/plots/GaussianDensityLayerPlot.java	/^package org.math.plot.plots;$/;"	p
org.math.plot.plots	src/org/math/plot/plots/GridPlot3D.java	/^package org.math.plot.plots;$/;"	p
org.math.plot.plots	src/org/math/plot/plots/HistogramPlot2D.java	/^package org.math.plot.plots;$/;"	p
org.math.plot.plots	src/org/math/plot/plots/HistogramPlot3D.java	/^package org.math.plot.plots;$/;"	p
org.math.plot.plots	src/org/math/plot/plots/LayerPlot.java	/^package org.math.plot.plots;$/;"	p
org.math.plot.plots	src/org/math/plot/plots/LinePlot.java	/^package org.math.plot.plots;$/;"	p
org.math.plot.plots	src/org/math/plot/plots/Plot.java	/^package org.math.plot.plots;$/;"	p
org.math.plot.plots	src/org/math/plot/plots/QuantileLayerPlot.java	/^package org.math.plot.plots;$/;"	p
org.math.plot.plots	src/org/math/plot/plots/ScatterPlot.java	/^package org.math.plot.plots;$/;"	p
org.math.plot.plots	src/org/math/plot/plots/StaircasePlot.java	/^package org.math.plot.plots;$/;"	p
org.math.plot.plots	src/org/math/plot/plots/VectorLayerPlot.java	/^package org.math.plot.plots;$/;"	p
org.math.plot.render	src/org/math/plot/render/AWTDrawer.java	/^package org.math.plot.render;$/;"	p
org.math.plot.render	src/org/math/plot/render/AWTDrawer2D.java	/^package org.math.plot.render;$/;"	p
org.math.plot.render	src/org/math/plot/render/AWTDrawer3D.java	/^package org.math.plot.render;$/;"	p
org.math.plot.render	src/org/math/plot/render/AbstractDrawer.java	/^package org.math.plot.render;$/;"	p
org.math.plot.render	src/org/math/plot/render/Projection.java	/^package org.math.plot.render;$/;"	p
org.math.plot.render	src/org/math/plot/render/Projection2D.java	/^package org.math.plot.render;$/;"	p
org.math.plot.render	src/org/math/plot/render/Projection3D.java	/^package org.math.plot.render;$/;"	p
org.math.plot.utils	src/org/math/plot/utils/Array.java	/^package org.math.plot.utils;$/;"	p
org.math.plot.utils	src/org/math/plot/utils/FastMath.java	/^package org.math.plot.utils;$/;"	p
org.math.plot.utils	src/org/math/plot/utils/Histogram.java	/^package org.math.plot.utils;$/;"	p
org.math.plot.utils	src/org/math/plot/utils/NumbersUtils.java	/^package org.math.plot.utils;$/;"	p
orientation	src/org/math/plot/components/LegendPanel.java	/^    int orientation;$/;"	f	class:LegendPanel
origin	src/org/math/plot/plotObjects/Axis.java	/^	protected double[] origin;$/;"	f	class:Axis
packagePath	src/connectivity/conn_package/PackageReader.java	/^	private String packagePath;$/;"	f	class:PackageReader	file:
paint	src/org/math/plot/canvas/PlotCanvas.java	/^    public void paint(Graphics gcomp) {$/;"	m	class:PlotCanvas
paint	src/org/math/plot/plotObjects/PaintImage.java	/^        public void paint(Graphics g);$/;"	m	interface:PaintImage.Paintable
panels	src/org/math/plot/components/DataFrame.java	/^    private JTabbedPane panels;$/;"	f	class:DataFrame	file:
panels	src/org/math/plot/components/DatasFrame.java	/^	public JTabbedPane panels;$/;"	f	class:DatasFrame
paramChoices	src/org/math/plot/ParametersPanel.java	/^	private String[][] paramChoices;$/;"	f	class:ParametersPanel	file:
paramLabels	src/org/math/plot/ParametersPanel.java	/^	private String[] paramLabels;$/;"	f	class:ParametersPanel	file:
paramValues	src/org/math/plot/ParametersPanel.java	/^	private String[] paramValues;$/;"	f	class:ParametersPanel	file:
paramValuesIndex	src/org/math/plot/ParametersPanel.java	/^	private int[] paramValuesIndex;$/;"	f	class:ParametersPanel	file:
parameter	src/org/math/plot/DataSelectPanel.java	/^        JComponent parameter;$/;"	f	class:DataSelectPanel.ParameterRow
parameter	src/org/math/plot/DataSelectTable.java	/^		JComponent parameter;$/;"	f	class:DataSelectTable.ParameterRow
passive	src/utils/statistics/StatisticsCollector.java	/^	private volatile Long passive=0l;$/;"	f	class:StatisticsCollector	file:
passive2active	src/utils/statistics/StatisticsCollector.java	/^	private volatile Long passive2active=0l;$/;"	f	class:StatisticsCollector	file:
pattern	src/org/math/plot/plots/ScatterPlot.java	/^    private boolean[][] pattern;$/;"	f	class:ScatterPlot	file:
phi	src/org/math/plot/render/Projection3D.java	/^    private void phi(double phi) {$/;"	m	class:Projection3D	file:
phi	src/org/math/plot/render/Projection3D.java	/^    public double phi;$/;"	f	class:Projection3D
pi	src/org/math/plot/render/Projection3D.java	/^    static double pi = Math.PI;$/;"	f	class:Projection3D
plasticity	src/spiking/controllers/node/NodeThread.java	/^	private Boolean plasticity;$/;"	f	class:NodeThread	file:
plasticity	src/spiking/node/Node.java	/^	private Boolean plasticity;$/;"	f	class:Node	file:
plasticity	src/utils/configuration/NodeCfg.java	/^	private Boolean plasticity;$/;"	f	class:NodeCfg	file:
plot	src/org/math/plot/components/DatasFrame.java	/^		Plot plot;$/;"	f	class:DatasFrame.DataPanel
plot	src/org/math/plot/components/LegendPanel.java	/^        Plot plot;$/;"	f	class:LegendPanel.Legend
plot	src/org/math/plot/plotObjects/Axis.java	/^	public void plot(AbstractDrawer draw) {$/;"	m	class:Axis
plot	src/org/math/plot/plotObjects/BaseLabel.java	/^	public void plot(AbstractDrawer draw) {$/;"	m	class:BaseLabel
plot	src/org/math/plot/plotObjects/BaseLine.java	/^	public void plot(AbstractDrawer draw) {$/;"	m	class:BaseLine
plot	src/org/math/plot/plotObjects/BasePlot.java	/^	public void plot(AbstractDrawer draw) {$/;"	m	class:BasePlot
plot	src/org/math/plot/plotObjects/Label.java	/^	public void plot(AbstractDrawer draw) {$/;"	m	class:Label
plot	src/org/math/plot/plotObjects/Line.java	/^	public void plot(AbstractDrawer draw) {$/;"	m	class:Line
plot	src/org/math/plot/plotObjects/PaintImage.java	/^    public void plot(AbstractDrawer draw) {$/;"	m	class:PaintImage
plot	src/org/math/plot/plotObjects/Plotable.java	/^	public void plot(AbstractDrawer draw);$/;"	m	interface:Plotable
plot	src/org/math/plot/plotObjects/RasterImage.java	/^	public void plot(AbstractDrawer draw) {$/;"	m	class:RasterImage
plot	src/org/math/plot/plots/BarPlot.java	/^	public void plot(AbstractDrawer draw, Color c) {$/;"	m	class:BarPlot
plot	src/org/math/plot/plots/BoxPlot2D.java	/^    public void plot(AbstractDrawer draw, Color c) {$/;"	m	class:BoxPlot2D
plot	src/org/math/plot/plots/BoxPlot3D.java	/^    public void plot(AbstractDrawer draw, Color c) {$/;"	m	class:BoxPlot3D
plot	src/org/math/plot/plots/CloudPlot2D.java	/^    public void plot(AbstractDrawer draw, Color c) {$/;"	m	class:CloudPlot2D
plot	src/org/math/plot/plots/CloudPlot3D.java	/^    public void plot(AbstractDrawer draw, Color c) {$/;"	m	class:CloudPlot3D
plot	src/org/math/plot/plots/DensityLayerPlot.java	/^	public void plot(AbstractDrawer draw, Color c) {$/;"	m	class:DensityLayerPlot
plot	src/org/math/plot/plots/GaussianDensityLayerPlot.java	/^	public void plot(AbstractDrawer draw, Color c) {$/;"	m	class:GaussianDensityLayerPlot
plot	src/org/math/plot/plots/GridPlot3D.java	/^    public void plot(AbstractDrawer draw, Color c) {$/;"	m	class:GridPlot3D
plot	src/org/math/plot/plots/HistogramPlot2D.java	/^    public void plot(AbstractDrawer draw, Color c) {$/;"	m	class:HistogramPlot2D
plot	src/org/math/plot/plots/HistogramPlot3D.java	/^    public void plot(AbstractDrawer draw, Color c) {$/;"	m	class:HistogramPlot3D
plot	src/org/math/plot/plots/LayerPlot.java	/^	Plot plot;$/;"	f	class:LayerPlot
plot	src/org/math/plot/plots/LinePlot.java	/^	public void plot(AbstractDrawer draw, Color c) {$/;"	m	class:LinePlot
plot	src/org/math/plot/plots/Plot.java	/^        Plot plot;$/;"	f	class:Plot.DefaultDataPanel
plot	src/org/math/plot/plots/Plot.java	/^    public abstract void plot(AbstractDrawer draw, Color c);$/;"	m	class:Plot
plot	src/org/math/plot/plots/Plot.java	/^    public void plot(AbstractDrawer draw) {$/;"	m	class:Plot
plot	src/org/math/plot/plots/QuantileLayerPlot.java	/^	public void plot(AbstractDrawer draw, Color c) {$/;"	m	class:QuantileLayerPlot
plot	src/org/math/plot/plots/ScatterPlot.java	/^    public void plot(AbstractDrawer draw, Color c) {$/;"	m	class:ScatterPlot
plot	src/org/math/plot/plots/StaircasePlot.java	/^	public void plot(AbstractDrawer draw, Color c) {$/;"	m	class:StaircasePlot
plot	src/org/math/plot/plots/VectorLayerPlot.java	/^	public void plot(AbstractDrawer draw, Color c) {$/;"	m	class:VectorLayerPlot
plotCanvas	src/org/math/plot/PlotPanel.java	/^    public PlotCanvas plotCanvas;$/;"	f	class:PlotPanel
plotCanvas	src/org/math/plot/components/DataFrame.java	/^    private PlotCanvas plotCanvas;$/;"	f	class:DataFrame	file:
plotCanvas	src/org/math/plot/components/DatasFrame.java	/^	private PlotCanvas plotCanvas;$/;"	f	class:DatasFrame	file:
plotCanvas	src/org/math/plot/components/LegendPanel.java	/^    PlotCanvas plotCanvas;$/;"	f	class:LegendPanel
plotCanvas	src/org/math/plot/components/PlotToolBar.java	/^    private PlotCanvas plotCanvas;$/;"	f	class:PlotToolBar	file:
plotCanvas	src/org/math/plot/components/ScalesFrame.java	/^    private PlotCanvas plotCanvas;$/;"	f	class:ScalesFrame	file:
plotCanvas	src/org/math/plot/plots/Plot.java	/^    public PlotCanvas plotCanvas;$/;"	f	class:Plot
plotLayerPlots	src/org/math/plot/plots/Plot.java	/^    public void plotLayerPlots(AbstractDrawer draw, Color c) {$/;"	m	class:Plot
plotLegend	src/org/math/plot/PlotPanel.java	/^    public LegendPanel plotLegend;$/;"	f	class:PlotPanel
plotPanel	src/org/math/plot/components/LegendPanel.java	/^    PlotPanel plotPanel;$/;"	f	class:LegendPanel
plotPanel	src/org/math/plot/components/PlotToolBar.java	/^    private PlotPanel plotPanel;$/;"	f	class:PlotToolBar	file:
plotToolBar	src/org/math/plot/PlotPanel.java	/^    public PlotToolBar plotToolBar;$/;"	f	class:PlotPanel
plots	src/org/math/plot/canvas/PlotCanvas.java	/^    public LinkedList<Plot> plots;$/;"	f	class:PlotCanvas
plottoolspanel	src/org/math/plot/components/DatasFrame.java	/^		JPanel plottoolspanel;$/;"	f	class:DatasFrame.DataPanel
plottoolspanel	src/org/math/plot/plots/Plot.java	/^        JPanel plottoolspanel;$/;"	f	class:Plot.DefaultDataPanel
plusBounded	src/org/math/plot/utils/NumbersUtils.java	/^    public static int plusBounded(int a, int b) {$/;"	m	class:NumbersUtils
plusBounded	src/org/math/plot/utils/NumbersUtils.java	/^    public static long plusBounded(long a, long b) {$/;"	m	class:NumbersUtils
plusExact	src/org/math/plot/utils/NumbersUtils.java	/^    public static int plusExact(int a, int b) {$/;"	m	class:NumbersUtils
plusExact	src/org/math/plot/utils/NumbersUtils.java	/^    public static long plusExact(long a, long b) {$/;"	m	class:NumbersUtils
pngFileChooser	src/org/math/plot/components/PlotToolBar.java	/^    private JFileChooser pngFileChooser;$/;"	f	class:PlotToolBar	file:
popNoLtd	src/spiking/node/plasticity/AfferentManager.java	/^	public Afferent popNoLtd(Synapse syn) {$/;"	m	class:AfferentManager
popNoLtp	src/spiking/node/plasticity/AfferentManager.java	/^	public Afferent popNoLtp(Synapse syn) {$/;"	m	class:AfferentManager
postSynapticWeight	src/spiking/node/SpikingSynapse.java	/^	private Double postSynapticWeight;$/;"	f	class:SpikingSynapse	file:
postsynapticWeight	src/utils/statistics/CollectedBurn.java	/^	private Double postsynapticWeight; $/;"	f	class:CollectedBurn	file:
pow	src/org/math/plot/utils/FastMath.java	/^    public static double pow(double value, double power) {$/;"	m	class:FastMath
pow2	src/org/math/plot/utils/FastMath.java	/^    public static double pow2(double value) {$/;"	m	class:FastMath
pow2	src/org/math/plot/utils/FastMath.java	/^    public static float pow2(float value) {$/;"	m	class:FastMath
pow2	src/org/math/plot/utils/FastMath.java	/^    public static int pow2(int value) {$/;"	m	class:FastMath
pow2	src/org/math/plot/utils/FastMath.java	/^    public static long pow2(long value) {$/;"	m	class:FastMath
pow2	src/org/math/plot/utils/NumbersUtils.java	/^    public static double pow2(double a) {$/;"	m	class:NumbersUtils
pow2	src/org/math/plot/utils/NumbersUtils.java	/^    public static float pow2(float a) {$/;"	m	class:NumbersUtils
pow2	src/org/math/plot/utils/NumbersUtils.java	/^    public static int pow2(int a) {$/;"	m	class:NumbersUtils
pow2	src/org/math/plot/utils/NumbersUtils.java	/^    public static long pow2(long a) {$/;"	m	class:NumbersUtils
pow3	src/org/math/plot/utils/FastMath.java	/^    public static double pow3(double value) {$/;"	m	class:FastMath
pow3	src/org/math/plot/utils/FastMath.java	/^    public static float pow3(float value) {$/;"	m	class:FastMath
pow3	src/org/math/plot/utils/FastMath.java	/^    public static int pow3(int value) {$/;"	m	class:FastMath
pow3	src/org/math/plot/utils/FastMath.java	/^    public static long pow3(long value) {$/;"	m	class:FastMath
pow3	src/org/math/plot/utils/NumbersUtils.java	/^    public static double pow3(double a) {$/;"	m	class:NumbersUtils
pow3	src/org/math/plot/utils/NumbersUtils.java	/^    public static float pow3(float a) {$/;"	m	class:NumbersUtils
pow3	src/org/math/plot/utils/NumbersUtils.java	/^    public static int pow3(int a) {$/;"	m	class:NumbersUtils
pow3	src/org/math/plot/utils/NumbersUtils.java	/^    public static long pow3(long a) {$/;"	m	class:NumbersUtils
powFast	src/org/math/plot/utils/FastMath.java	/^    public static double powFast(double value, int power) {$/;"	m	class:FastMath
powQuick	src/org/math/plot/utils/FastMath.java	/^    public static double powQuick(double value, double power) {$/;"	m	class:FastMath
pr	src/connectivity/nodes/ConnectivityPackageManager.java	/^	private PackageReader pr = new PackageReader(this);$/;"	f	class:ConnectivityPackageManager	file:
preSynapticWeight	src/spiking/node/neuron/Neuron.java	/^	private Double preSynapticWeight;$/;"	f	class:Neuron	file:
precisionUnit	src/org/math/plot/plotObjects/Base.java	/^	protected double[] precisionUnit;$/;"	f	class:Base
presynapticWeight	src/spiking/node/SpikingSynapse.java	/^	private Double presynapticWeight;$/;"	f	class:SpikingSynapse	file:
presynapticWeight	src/utils/statistics/CollectedBurn.java	/^	private Double presynapticWeight; $/;"	f	class:CollectedBurn	file:
presynapticWeights	src/spiking/node/neuron/NodeNeuronsManager.java	/^	private HashMap<Long, Double> presynapticWeights;$/;"	f	class:NodeNeuronsManager	file:
presynaptic_w	src/spiking/node/Synapse.java	/^	private Double presynaptic_w;$/;"	f	class:Synapse	file:
prew	src/spiking/node/Node.java	/^	private Double prew=0.5;$/;"	f	class:Node	file:
prew4Test	src/spiking/simulator/SpikingNeuralSimulator.java	/^	public static final Double prew4Test = 0.5;$/;"	f	class:SpikingNeuralSimulator
printAn	src/spiking/node/neuron/NodeNeuronsManager.java	/^	public void printAn(){$/;"	m	class:NodeNeuronsManager
printAxMap	src/spiking/node/SynapsesManager.java	/^	public void printAxMap(){$/;"	m	class:SynapsesManager
printBreakLine	src/spiking/simulator/SpikingNeuralSimulator.java	/^	public void printBreakLine(){$/;"	m	class:SpikingNeuralSimulator
printDebug	src/spiking/controllers/node/NodeThread.java	/^	public void printDebug(){$/;"	m	class:NodeThread
printDebug	src/spiking/simulator/SpikingNeuralSimulator.java	/^	public void printDebug(){$/;"	m	class:SpikingNeuralSimulator
printDoubleArray	src/org/math/io/parser/ArrayString.java	/^    public static String printDoubleArray(double[] m) {$/;"	m	class:ArrayString
printDoubleArray	src/org/math/io/parser/ArrayString.java	/^    public static String printDoubleArray(double[][] m) {$/;"	m	class:ArrayString
printDoubleArray	src/org/math/io/parser/ArrayString.java	/^    public static String printDoubleArray(double[][] m, String wordDelimiter, String sentenceDelimiter) {$/;"	m	class:ArrayString
printExternalInputSpikeTimeMatrix	src/spiking/node/Node.java	/^	public void printExternalInputSpikeTimeMatrix(){$/;"	m	class:Node
printFirePlot	src/utils/statistics/StatisticsCollector.java	/^	public void printFirePlot(){$/;"	m	class:StatisticsCollector
printFirePlot	src/utils/statistics/StatisticsCollector.java	/^	public void printFirePlot(String outputFileName){$/;"	m	class:StatisticsCollector
printIntArray	src/org/math/io/parser/ArrayString.java	/^    public static String printIntArray(int[] m) {$/;"	m	class:ArrayString
printIntArray	src/org/math/io/parser/ArrayString.java	/^    public static String printIntArray(int[][] m) {$/;"	m	class:ArrayString
printIntArray	src/org/math/io/parser/ArrayString.java	/^    public static String printIntArray(int[][] m, String wordDelimiter, String sentenceDelimiter) {$/;"	m	class:ArrayString
printNodeFields	src/spiking/node/NodesManager.java	/^	public void printNodeFields(){$/;"	m	class:NodesManager
printNodeFields	src/spiking/node/NodesManager.java~	/^	public void printNodeFields(){$/;"	m	class:NodesManager
printNodeFields	src/spiking/simulator/SpikingNeuralSimulator.java	/^	public void printNodeFields(){$/;"	m	class:SpikingNeuralSimulator
printNodesConnections	src/spiking/node/Node.java	/^	public void printNodesConnections(){$/;"	m	class:Node
printQueue	src/utils/tools/NiceQueue.java	/^    public void printQueue(){$/;"	m	class:NiceQueue
printQueues	src/spiking/controllers/node/NodeThread.java	/^	public void printQueues(){$/;"	m	class:NodeThread
printSpikeTimeMatrix	src/spiking/node/external_inputs/ExternalInput.java	/^	public void printSpikeTimeMatrix(){$/;"	m	class:ExternalInput
print_times	src/spiking/controllers/node/NodeThread.java	/^	public void print_times() {$/;"	m	class:NodeThread
println	src/connectivity/conn_package/PackageReader.java	/^	private void println(String s){$/;"	m	class:PackageReader	file:
println	src/spiking/controllers/node/NodeThread.java	/^	private void println(String s){$/;"	m	class:NodeThread	file:
println	src/spiking/node/Node.java	/^	private void println(String s){$/;"	m	class:Node	file:
println	src/spiking/node/NodesManager.java	/^	private void println(String s){$/;"	m	class:NodesManager	file:
println	src/spiking/node/NodesManager.java~	/^	private void println(String s){$/;"	m	class:NodesManager	file:
println	src/spiking/node/Synapse.java	/^	private void println(String s){$/;"	m	class:Synapse	file:
println	src/spiking/node/SynapsesManager.java	/^	private void println(String s){$/;"	m	class:SynapsesManager	file:
println	src/spiking/node/external_inputs/ExternalInput.java	/^	private void println(String s){$/;"	m	class:ExternalInput	file:
println	src/spiking/node/neuron/NodeNeuronsManager.java	/^	private void println(String s){$/;"	m	class:NodeNeuronsManager	file:
println	src/spiking/simulator/SpikingNeuralSimulator.java	/^	private void println(String s){$/;"	m	class:SpikingNeuralSimulator	file:
processBurnSpike	src/utils/statistics/StatisticsCollector.java	/^	private void processBurnSpike(CollectedBurn cb) {$/;"	m	class:StatisticsCollector	file:
processFireSpike	src/utils/statistics/StatisticsCollector.java	/^	private void processFireSpike(CollectedFire cf) {$/;"	m	class:StatisticsCollector	file:
project	src/org/math/plot/render/AWTDrawer.java	/^    public int[] project(double... pC) {$/;"	m	class:AWTDrawer
project	src/org/math/plot/render/AbstractDrawer.java	/^    public abstract int[] project(double... pC);$/;"	m	class:AbstractDrawer
projectBase	src/org/math/plot/render/AWTDrawer.java	/^    public int[] projectBase(double... rC) {$/;"	m	class:AWTDrawer
projectBase	src/org/math/plot/render/AbstractDrawer.java	/^    public abstract int[] projectBase(double... rC);$/;"	m	class:AbstractDrawer
projection	src/org/math/plot/render/AWTDrawer.java	/^    public Projection projection;$/;"	f	class:AWTDrawer
pullInternodeFires	src/spiking/controllers/node/NodeThread.java	/^	public ArrayList<InterNodeSpike> pullInternodeFires() {$/;"	m	class:NodeThread
putBurningIntraNodeSynapse	src/spiking/node/SynapsesManager.java	/^	private void putBurningIntraNodeSynapse(Synapse burningNeuronSynapse){$/;"	m	class:SynapsesManager	file:
putBurningNeuronInterRegionConnection	src/spiking/node/SynapsesManager.java	/^	private void putBurningNeuronInterRegionConnection(Long burningNeuronId, Synapse neuronRegionConnection){$/;"	m	class:SynapsesManager	file:
putConnection	src/spiking/node/Node.java	/^	private void putConnection (Long firingNeuronId, Long burningNeuronId, Double presynaptic_weight){$/;"	m	class:Node	file:
putFiringIntraNodeSynapse	src/spiking/node/SynapsesManager.java	/^	private void putFiringIntraNodeSynapse(Synapse firingNeuronSynapse){$/;"	m	class:SynapsesManager	file:
putFiringNeuronInterRegionConnection	src/spiking/node/SynapsesManager.java	/^	private void putFiringNeuronInterRegionConnection(Long firingNeuronId, Synapse neuronRegionConnection){$/;"	m	class:SynapsesManager	file:
pwMax	src/spiking/node/Node.java	/^	private Double pwMax;$/;"	f	class:Node	file:
pwMax	src/spiking/node/plasticity/Afferent.java	/^	private static final Double pwMax = 1.0;$/;"	f	class:Afferent	file:
pwMax	src/spiking/node/plasticity/AfferentManager.java	/^	private Double pwMax = 100.0;$/;"	f	class:AfferentManager	file:
pw_max	src/utils/configuration/NodeCfg.java	/^	private Double pw_max;$/;"	f	class:NodeCfg	file:
quantileRate	src/org/math/plot/plots/QuantileLayerPlot.java	/^	double quantileRate;$/;"	f	class:QuantileLayerPlot
queue	src/utils/tools/NiceQueue.java	/^	private PriorityQueue<NiceNode> queue;$/;"	f	class:NiceQueue	file:
queuesMap	src/spiking/controllers/node/NodeThread.java	/^	private HashMap<Synapse, NiceQueue>queuesMap;$/;"	f	class:NodeThread	file:
r	src/org/math/io/littleendian/LERandomAccessFile.java	/^    protected RandomAccessFile r;$/;"	f	class:LERandomAccessFile
radius	src/org/math/plot/plots/ScatterPlot.java	/^    private int radius;$/;"	f	class:ScatterPlot	file:
randGen	src/spiking/node/NodesManager.java	/^	private Random randGen = new Random(System.currentTimeMillis());$/;"	f	class:NodesManager	file:
randGen	src/spiking/node/NodesManager.java~	/^	private Random randGen = new Random(System.currentTimeMillis());$/;"	f	class:NodesManager	file:
random	src/org/math/plot/utils/FastMath.java	/^    public static double random() {$/;"	m	class:FastMath
read	src/org/math/io/files/ASCIIFile.java	/^    public String read() {$/;"	m	class:ASCIIFile
read	src/org/math/io/files/ASCIIFile.java	/^    public static String read(File f) {$/;"	m	class:ASCIIFile
read	src/org/math/io/littleendian/LEDataInputStream.java	/^    public int read(byte b[], int off, int len) throws IOException {$/;"	m	class:LEDataInputStream
read	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final int read() throws IOException {$/;"	m	class:LERandomAccessFile
read	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final int read(byte b[]) throws IOException {$/;"	m	class:LERandomAccessFile
read	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final int read(byte b[], int off, int len) throws IOException {$/;"	m	class:LERandomAccessFile
read	src/org/math/io/stream/BinaryInputStream.java	/^    public int read() {$/;"	m	class:BinaryInputStream
readAmplitudesFile	src/connectivity/conn_package/PackageReader.java	/^	private void readAmplitudesFile(){$/;"	m	class:PackageReader	file:
readAmplitudesStdDeviationFile	src/connectivity/conn_package/PackageReader.java	/^	private void readAmplitudesStdDeviationFile(){$/;"	m	class:PackageReader	file:
readBoolean	src/org/math/io/littleendian/LEDataInputStream.java	/^    public boolean readBoolean() throws IOException {$/;"	m	class:LEDataInputStream
readBoolean	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final boolean readBoolean() throws IOException {$/;"	m	class:LERandomAccessFile
readByte	src/org/math/io/files/BinaryFile.java	/^    public byte readByte() {$/;"	m	class:BinaryFile
readByte	src/org/math/io/littleendian/LEDataInputStream.java	/^    public byte readByte() throws IOException {$/;"	m	class:LEDataInputStream
readByte	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final byte readByte() throws IOException {$/;"	m	class:LERandomAccessFile
readByte	src/org/math/io/stream/BinaryInputStream.java	/^    public byte readByte() {$/;"	m	class:BinaryInputStream
readByteArray	src/org/math/io/files/BinaryFile.java	/^    public byte[] readByteArray() {$/;"	m	class:BinaryFile
readByteArray	src/org/math/io/stream/BinaryInputStream.java	/^    public byte[] readByteArray() {$/;"	m	class:BinaryInputStream
readCentersFile	src/connectivity/conn_package/PackageReader.java	/^	private void readCentersFile(){$/;"	m	class:PackageReader	file:
readChar	src/org/math/io/littleendian/LEDataInputStream.java	/^    public char readChar() throws IOException {$/;"	m	class:LEDataInputStream
readChar	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final char readChar() throws IOException {$/;"	m	class:LERandomAccessFile
readConfigFile	src/utils/configuration/SpikingConfigManager.java	/^	public static SpikingSimulatorCfg readConfigFile(String path){$/;"	m	class:SpikingConfigManager
readConnectionsTypeFile	src/connectivity/conn_package/PackageReader.java	/^	private void readConnectionsTypeFile(){$/;"	m	class:PackageReader	file:
readConnectivityPackage	src/connectivity/conn_package/PackageReader.java	/^	public void readConnectivityPackage(String path){$/;"	m	class:PackageReader
readConnectivityPackage	src/connectivity/nodes/ConnectivityPackageManager.java	/^	public void readConnectivityPackage(String path){$/;"	m	class:ConnectivityPackageManager
readDouble	src/org/math/io/files/BinaryFile.java	/^    public double readDouble() {$/;"	m	class:BinaryFile
readDouble	src/org/math/io/littleendian/LEDataInputStream.java	/^    public double readDouble() throws IOException {$/;"	m	class:LEDataInputStream
readDouble	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final double readDouble() throws IOException {$/;"	m	class:LERandomAccessFile
readDouble	src/org/math/io/stream/BinaryInputStream.java	/^    public double readDouble() {$/;"	m	class:BinaryInputStream
readDouble1DArray	src/org/math/io/files/ASCIIFile.java	/^    public static double[] readDouble1DArray(File f) {$/;"	m	class:ASCIIFile
readDoubleArray	src/org/math/io/files/ASCIIFile.java	/^    public static double[][] readDoubleArray(File f) {$/;"	m	class:ASCIIFile
readDoubleArray	src/org/math/io/files/BinaryFile.java	/^    public double[] readDoubleArray() {$/;"	m	class:BinaryFile
readDoubleArray	src/org/math/io/files/BinaryFile.java	/^    public static double[] readDoubleArray(File f, String endian) {$/;"	m	class:BinaryFile
readDoubleArray	src/org/math/io/stream/BinaryInputStream.java	/^    public double[] readDoubleArray() {$/;"	m	class:BinaryInputStream
readDoubleArray	src/org/math/io/stream/BinaryInputStream.java	/^    public double[] readDoubleArray(int n1, int n2) {$/;"	m	class:BinaryInputStream
readDoubleArray	src/org/math/io/stream/BinaryInputStream.java	/^    public static double[] readDoubleArray(InputStream in, String endian) {$/;"	m	class:BinaryInputStream
readFloat	src/org/math/io/files/BinaryFile.java	/^    public float readFloat() {$/;"	m	class:BinaryFile
readFloat	src/org/math/io/littleendian/LEDataInputStream.java	/^    public float readFloat() throws IOException {$/;"	m	class:LEDataInputStream
readFloat	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final float readFloat() throws IOException {$/;"	m	class:LERandomAccessFile
readFloat	src/org/math/io/stream/BinaryInputStream.java	/^    public float readFloat() {$/;"	m	class:BinaryInputStream
readFloatArray	src/org/math/io/files/BinaryFile.java	/^    public float[] readFloatArray() {$/;"	m	class:BinaryFile
readFloatArray	src/org/math/io/files/BinaryFile.java	/^    public static float[] readFloatArray(File f, String endian) {$/;"	m	class:BinaryFile
readFloatArray	src/org/math/io/stream/BinaryInputStream.java	/^    public float[] readFloatArray() {$/;"	m	class:BinaryInputStream
readFloatArray	src/org/math/io/stream/BinaryInputStream.java	/^    public static float[] readFloatArray(InputStream in, String endian) {$/;"	m	class:BinaryInputStream
readFully	src/org/math/io/littleendian/LEDataInputStream.java	/^    public void readFully(byte b[]) throws IOException {$/;"	m	class:LEDataInputStream
readFully	src/org/math/io/littleendian/LEDataInputStream.java	/^    public void readFully(byte b[], int off, int len) throws IOException {$/;"	m	class:LEDataInputStream
readFully	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final void readFully(byte b[]) throws IOException {$/;"	m	class:LERandomAccessFile
readFully	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final void readFully(byte b[], int off, int len) throws IOException {$/;"	m	class:LERandomAccessFile
readInt	src/org/math/io/files/BinaryFile.java	/^    public int readInt() {$/;"	m	class:BinaryFile
readInt	src/org/math/io/littleendian/LEDataInputStream.java	/^    public int readInt() throws IOException {$/;"	m	class:LEDataInputStream
readInt	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final int readInt() throws IOException {$/;"	m	class:LERandomAccessFile
readInt	src/org/math/io/stream/BinaryInputStream.java	/^    public int readInt() {$/;"	m	class:BinaryInputStream
readInt1DArray	src/org/math/io/files/ASCIIFile.java	/^    public static int[] readInt1DArray(File f) {$/;"	m	class:ASCIIFile
readIntArray	src/org/math/io/files/ASCIIFile.java	/^    public static int[][] readIntArray(File f) {$/;"	m	class:ASCIIFile
readIntArray	src/org/math/io/files/BinaryFile.java	/^    public int[] readIntArray() {$/;"	m	class:BinaryFile
readIntArray	src/org/math/io/files/BinaryFile.java	/^    public static int[] readIntArray(File f, String endian) {$/;"	m	class:BinaryFile
readIntArray	src/org/math/io/stream/BinaryInputStream.java	/^    public int[] readIntArray() {$/;"	m	class:BinaryInputStream
readIntArray	src/org/math/io/stream/BinaryInputStream.java	/^    public static int[] readIntArray(InputStream in, String endian) {$/;"	m	class:BinaryInputStream
readLengthsFile	src/connectivity/conn_package/PackageReader.java	/^	private void readLengthsFile(){$/;"	m	class:PackageReader	file:
readLengthsShapeParametersFile	src/connectivity/conn_package/PackageReader.java	/^	private void readLengthsShapeParametersFile(){$/;"	m	class:PackageReader	file:
readLine	src/org/math/io/files/ASCIIFile.java	/^    public String readLine(int i) {$/;"	m	class:ASCIIFile
readLine	src/org/math/io/files/ASCIIFile.java	/^    public static String readLine(File f, int i) {$/;"	m	class:ASCIIFile
readLine	src/org/math/io/littleendian/LEDataInputStream.java	/^    public String readLine() throws IOException {$/;"	m	class:LEDataInputStream
readLine	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final String readLine() throws IOException {$/;"	m	class:LERandomAccessFile
readLines	src/org/math/io/files/ASCIIFile.java	/^    public String[] readLines() {$/;"	m	class:ASCIIFile
readLines	src/org/math/io/files/ASCIIFile.java	/^    public static String[] readLines(File f) {$/;"	m	class:ASCIIFile
readLong	src/org/math/io/littleendian/LEDataInputStream.java	/^    public long readLong() throws IOException {$/;"	m	class:LEDataInputStream
readLong	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final long readLong() throws IOException {$/;"	m	class:LERandomAccessFile
readShort	src/org/math/io/littleendian/LEDataInputStream.java	/^    public short readShort() throws IOException {$/;"	m	class:LEDataInputStream
readShort	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final short readShort() throws IOException {$/;"	m	class:LERandomAccessFile
readString1DDouble	src/org/math/io/parser/ArrayString.java	/^    public static double[] readString1DDouble(String s) {$/;"	m	class:ArrayString
readString1DDouble	src/org/math/io/parser/ArrayString.java	/^    public static double[] readString1DDouble(String s, String columnDelimiter) {$/;"	m	class:ArrayString
readString1DInt	src/org/math/io/parser/ArrayString.java	/^    public static int[] readString1DInt(String s) {$/;"	m	class:ArrayString
readString1DInt	src/org/math/io/parser/ArrayString.java	/^    public static int[] readString1DInt(String s, String columnDelimiter) {$/;"	m	class:ArrayString
readStringDouble	src/org/math/io/parser/ArrayString.java	/^    public static double[][] readStringDouble(String s) {$/;"	m	class:ArrayString
readStringDouble	src/org/math/io/parser/ArrayString.java	/^    public static double[][] readStringDouble(String s, String columnDelimiter, String rowDelimiter) {$/;"	m	class:ArrayString
readStringInt	src/org/math/io/parser/ArrayString.java	/^    public static int[][] readStringInt(String s) {$/;"	m	class:ArrayString
readStringInt	src/org/math/io/parser/ArrayString.java	/^    public static int[][] readStringInt(String s, String columnDelimiter, String rowDelimiter) {$/;"	m	class:ArrayString
readUTF	src/org/math/io/littleendian/LEDataInputStream.java	/^    public String readUTF() throws IOException {$/;"	m	class:LEDataInputStream
readUTF	src/org/math/io/littleendian/LEDataInputStream.java	/^    public static String readUTF(DataInput in) throws IOException {$/;"	m	class:LEDataInputStream
readUTF	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final String readUTF() throws IOException {$/;"	m	class:LERandomAccessFile
readUnsignedByte	src/org/math/io/littleendian/LEDataInputStream.java	/^    public int readUnsignedByte() throws IOException {$/;"	m	class:LEDataInputStream
readUnsignedByte	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final int readUnsignedByte() throws IOException {$/;"	m	class:LERandomAccessFile
readUnsignedShort	src/org/math/io/littleendian/LEDataInputStream.java	/^    public int readUnsignedShort() throws IOException {$/;"	m	class:LEDataInputStream
readUnsignedShort	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final int readUnsignedShort() throws IOException {$/;"	m	class:LERandomAccessFile
readWeightsFile	src/connectivity/conn_package/PackageReader.java	/^	private void readWeightsFile(){$/;"	m	class:PackageReader	file:
rectStroke	src/org/math/plot/canvas/PlotCanvas.java	/^    final Stroke rectStroke = new BasicStroke(1, BasicStroke.CAP_ROUND, BasicStroke.JOIN_BEVEL);$/;"	f	class:PlotCanvas
region2checkMask	src/utils/statistics/StatisticsCollector.java	/^	private volatile BigInteger region2checkMask = BigInteger.ZERO;$/;"	f	class:StatisticsCollector	file:
regsWithExternalInputs	src/spiking/node/NodesManager.java	/^	private ArrayList<Integer> regsWithExternalInputs = new ArrayList<Integer>();$/;"	f	class:NodesManager	file:
regsWithExternalInputs	src/spiking/node/NodesManager.java~	/^	private ArrayList<Integer> regsWithExternalInputs = new ArrayList<Integer>();$/;"	f	class:NodesManager	file:
remainder	src/org/math/plot/utils/FastMath.java	/^    public static double remainder(double dividend, double divisor) {$/;"	m	class:FastMath
remainderTwoPi	src/org/math/plot/utils/FastMath.java	/^    private static double remainderTwoPi(double angle) {$/;"	m	class:FastMath	file:
remainderTwoPiFast	src/org/math/plot/utils/FastMath.java	/^    private static double remainderTwoPiFast(double angle) {$/;"	m	class:FastMath	file:
removeActiveNeuron	src/spiking/node/neuron/NodeNeuronsManager.java	/^	public void removeActiveNeuron(Long neuronId){$/;"	m	class:NodeNeuronsManager
removeAllPlotables	src/org/math/plot/PlotPanel.java	/^    public void removeAllPlotables() {$/;"	m	class:PlotPanel
removeAllPlotables	src/org/math/plot/canvas/PlotCanvas.java	/^    public void removeAllPlotables() {$/;"	m	class:PlotCanvas
removeAllPlots	src/org/math/plot/PlotPanel.java	/^    public void removeAllPlots() {$/;"	m	class:PlotPanel
removeAllPlots	src/org/math/plot/canvas/PlotCanvas.java	/^    public void removeAllPlots() {$/;"	m	class:PlotCanvas
removeLegend	src/org/math/plot/PlotPanel.java	/^    public void removeLegend() {$/;"	m	class:PlotPanel
removePlot	src/org/math/plot/PlotPanel.java	/^    public void removePlot(Plot p) {$/;"	m	class:PlotPanel
removePlot	src/org/math/plot/PlotPanel.java	/^    public void removePlot(int I) {$/;"	m	class:PlotPanel
removePlot	src/org/math/plot/canvas/PlotCanvas.java	/^    public void removePlot(Plot p) {$/;"	m	class:PlotCanvas
removePlot	src/org/math/plot/canvas/PlotCanvas.java	/^    public void removePlot(int I) {$/;"	m	class:PlotCanvas
removePlotToolBar	src/org/math/plot/PlotPanel.java	/^    public void removePlotToolBar() {$/;"	m	class:PlotPanel
removePlotable	src/org/math/plot/PlotPanel.java	/^    public void removePlotable(Plotable p) {$/;"	m	class:PlotPanel
removePlotable	src/org/math/plot/PlotPanel.java	/^    public void removePlotable(int i) {$/;"	m	class:PlotPanel
removePlotable	src/org/math/plot/canvas/PlotCanvas.java	/^    public void removePlotable(Plotable p) {$/;"	m	class:PlotCanvas
removePlotable	src/org/math/plot/canvas/PlotCanvas.java	/^    public void removePlotable(int i) {$/;"	m	class:PlotCanvas
removeSelectionListener	src/org/math/plot/MatrixTablePanel.java	/^    public void removeSelectionListener(ListSelectionListener lsitener) {$/;"	m	class:MatrixTablePanel
removeTableModelListener	src/org/math/plot/DataSelectTable.java	/^		public void removeTableModelListener(TableModelListener l) {$/;"	m	class:DataSelectTable.Model
reset	src/utils/statistics/StatisticsCollector.java	/^	private void reset(){$/;"	m	class:StatisticsCollector	file:
resetBase	src/org/math/plot/canvas/PlotCanvas.java	/^    public void resetBase() {$/;"	m	class:PlotCanvas
resetBase	src/org/math/plot/plotObjects/Axis.java	/^	public void resetBase() {$/;"	m	class:Axis
resetBase	src/org/math/plot/plotObjects/BaseDependant.java	/^	public void resetBase();$/;"	m	interface:BaseDependant
resetBase	src/org/math/plot/plotObjects/BasePlot.java	/^	public void resetBase() {$/;"	m	class:BasePlot
resetBaseProjection	src/org/math/plot/render/AWTDrawer.java	/^    public void resetBaseProjection() {$/;"	m	class:AWTDrawer
resetBaseProjection	src/org/math/plot/render/AbstractDrawer.java	/^    public abstract void resetBaseProjection();$/;"	m	class:AbstractDrawer
resetCoords	src/org/math/plot/plotObjects/Base.java	/^	private void resetCoords() {$/;"	m	class:Base	file:
resetGradient	src/org/math/plot/render/AbstractDrawer.java	/^    public void resetGradient() {$/;"	m	class:AbstractDrawer
resetLastBurningTime	src/spiking/node/Synapse.java	/^	public void resetLastBurningTime() {$/;"	m	class:Synapse
resetMapData	src/org/math/plot/PlotPanel.java	/^    public void resetMapData() {$/;"	m	class:PlotPanel
resetMapData	src/org/math/plot/canvas/PlotCanvas.java	/^    public void resetMapData() {$/;"	m	class:PlotCanvas
resetState	src/spiking/node/neuron/NodeNeuronsManager.java	/^	public void resetState(Long neuronId) {$/;"	m	class:NodeNeuronsManager
resetTimeToFire	src/spiking/node/neuron/NodeNeuronsManager.java	/^	public void resetTimeToFire(Long neuronId){$/;"	m	class:NodeNeuronsManager
reverseMapedData	src/org/math/plot/canvas/PlotCanvas.java	/^    public Object[] reverseMapedData(double[] mapeddata) {$/;"	m	class:PlotCanvas
reverseMapedData	src/org/math/plot/canvas/PlotCanvas.java	/^    public Object[][] reverseMapedData(double[][] mapeddata) {$/;"	m	class:PlotCanvas
reverseStringMap	src/org/math/plot/utils/Array.java	/^    public static HashMap<Double, String> reverseStringMap(HashMap<String, Double> map) {$/;"	m	class:Array
reversedMaps	src/org/math/plot/canvas/PlotCanvas.java	/^    HashMap<Double, String>[] reversedMaps;$/;"	f	class:PlotCanvas
rewiring_P	src/utils/configuration/NodeCfg.java	/^	private Double rewiring_P;$/;"	f	class:NodeCfg	file:
rint	src/org/math/plot/utils/FastMath.java	/^    public static double rint(double a) {$/;"	m	class:FastMath
ris	src/connectivity/nodes/ConnectivityPackageManager.java	/^	private ArrayList <NodesInterconnection> ris = new ArrayList<>();$/;"	f	class:ConnectivityPackageManager	file:
rm	src/connectivity/conn_package/PackageReader.java	/^	private ConnectivityPackageManager rm;$/;"	f	class:PackageReader	file:
rm	src/connectivity/nodes/Node.java	/^	private ConnectivityPackageManager rm;$/;"	f	class:Node	file:
rotate	src/org/math/plot/Plot3DPanel.java	/^    public void rotate(double theta, double phi) {$/;"	m	class:Plot3DPanel
rotate	src/org/math/plot/canvas/Plot3DCanvas.java	/^    public void rotate(double theta, double phi) {$/;"	m	class:Plot3DCanvas
rotate	src/org/math/plot/plotObjects/Label.java	/^	public void rotate(double _angle) {$/;"	m	class:Label
rotate	src/org/math/plot/render/AWTDrawer3D.java	/^    public void rotate(int[] t, int[] panelSize) {$/;"	m	class:AWTDrawer3D
rotate	src/org/math/plot/render/Projection3D.java	/^    public void rotate(double _theta, double _phi) {$/;"	m	class:Projection3D
rotate	src/org/math/plot/render/Projection3D.java	/^    public void rotate(int[] screenTranslation, int[] dimension) {$/;"	m	class:Projection3D
round	src/org/math/plot/utils/FastMath.java	/^    public static int round(float value) {$/;"	m	class:FastMath
round	src/org/math/plot/utils/FastMath.java	/^    public static long round(double value) {$/;"	m	class:FastMath
roundBounds	src/org/math/plot/plotObjects/Base.java	/^	public void roundBounds(int i) {$/;"	m	class:Base
roundXmax	src/org/math/plot/plotObjects/Base.java	/^	public double[] roundXmax;$/;"	f	class:Base
roundXmin	src/org/math/plot/plotObjects/Base.java	/^	public double[] roundXmin;$/;"	f	class:Base
row_height	src/org/math/plot/DataSelectPanel.java	/^    public int row_height = 60;$/;"	f	class:DataSelectPanel
row_width	src/org/math/plot/DataSelectPanel.java	/^    public int row_width = 300;$/;"	f	class:DataSelectPanel
rows	src/org/math/plot/DataSelectPanel.java	/^    ParameterRow[] rows;$/;"	f	class:DataSelectPanel
rows	src/org/math/plot/DataSelectTable.java	/^	LinkedList<ParameterRow> rows;$/;"	f	class:DataSelectTable
run	src/spiking/controllers/node/NodeThread.java	/^	public void run(){$/;"	m	class:NodeThread
run	src/spiking/simulator/SpikingNeuralSimulator.java	/^	public void run(){$/;"	m	class:SpikingNeuralSimulator
run	src/utils/statistics/StatisticsCollector.java	/^	public void run() {$/;"	m	class:StatisticsCollector
runNewSplit	src/spiking/controllers/node/NodeThread.java	/^	public void runNewSplit(double newStopTime){$/;"	m	class:NodeThread
runNewSplit	src/spiking/node/NodesManager.java	/^	public void runNewSplit(double newStopTime) {$/;"	m	class:NodesManager
runNewSplit	src/spiking/node/NodesManager.java~	/^	public void runNewSplit(double newStopTime) {$/;"	m	class:NodesManager
runNewSplit	src/spiking/simulator/SpikingNeuralSimulator.java	/^	public void runNewSplit(double newStopTime){$/;"	m	class:SpikingNeuralSimulator
s	src/spiking/node/SpikingSynapse.java	/^	private Synapse s;$/;"	f	class:SpikingSynapse	file:
s	src/utils/statistics/CollectedBurn.java	/^	private Synapse s; $/;"	f	class:CollectedBurn	file:
saveFile	src/org/math/plot/components/DataToolBar.java	/^	void saveFile() {$/;"	m	class:DataToolBar
saveGraphicFile	src/org/math/plot/components/PlotToolBar.java	/^    void saveGraphicFile() {$/;"	m	class:PlotToolBar
sc	src/spiking/controllers/node/NodeThread.java	/^	private StatisticsCollector sc;$/;"	f	class:NodeThread	file:
sc	src/spiking/node/NodesManager.java	/^	private StatisticsCollector sc;$/;"	f	class:NodesManager	file:
sc	src/spiking/node/NodesManager.java~	/^	private StatisticsCollector sc;$/;"	f	class:NodesManager	file:
sc	src/spiking/simulator/SpikingNeuralSimulator.java	/^	private StatisticsCollector sc=new StatisticsCollector();$/;"	f	class:SpikingNeuralSimulator	file:
scalb	src/org/math/plot/utils/FastMath.java	/^    public static double scalb(double d, int scaleFactor) {$/;"	m	class:FastMath
scalb	src/org/math/plot/utils/FastMath.java	/^    public static float scalb(float f, int scaleFactor) {$/;"	m	class:FastMath
scaleType	src/org/math/plot/components/ScalesFrame.java	/^        private String scaleType;$/;"	f	class:ScalesFrame.ScalePanel	file:
scale_group	src/org/math/plot/components/ScalesFrame.java	/^        private ButtonGroup scale_group = new ButtonGroup();$/;"	f	class:ScalesFrame.ScalePanel	file:
scale_label	src/org/math/plot/components/ScalesFrame.java	/^        private JLabel scale_label = new JLabel("Scale");$/;"	f	class:ScalesFrame.ScalePanel	file:
scalepanels	src/org/math/plot/components/ScalesFrame.java	/^    private ScalePanel[] scalepanels;$/;"	f	class:ScalesFrame	file:
scalesFrame	src/org/math/plot/canvas/PlotCanvas.java	/^    JFrame scalesFrame = new ScalesFrame(this);$/;"	f	class:PlotCanvas
scalespanel	src/org/math/plot/components/ScalesFrame.java	/^    private JPanel scalespanel;$/;"	f	class:ScalesFrame	file:
screenProjection	src/org/math/plot/render/Projection.java	/^    public int[] screenProjection(double... pC) {$/;"	m	class:Projection
screenProjectionBase	src/org/math/plot/render/Projection.java	/^    public int[] screenProjectionBase(double... rC) {$/;"	m	class:Projection
screen_offset	src/org/math/plot/render/AbstractDrawer.java	/^    protected int[] screen_offset;$/;"	f	class:AbstractDrawer
scrollPane	src/org/math/plot/DataPanel.java	/^    protected JScrollPane scrollPane;$/;"	f	class:DataPanel
seek	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final void seek(long pos) throws IOException {$/;"	m	class:LERandomAccessFile
selectAsX	src/org/math/plot/DataSelectPanel.java	/^        public void selectAsX() {$/;"	m	class:DataSelectPanel.ParameterRow
selectAsX	src/org/math/plot/DataSelectPanel.java	/^    public void selectAsX(int row) {$/;"	m	class:DataSelectPanel
selectAsY	src/org/math/plot/DataSelectPanel.java	/^        public void selectAsY() {$/;"	m	class:DataSelectPanel.ParameterRow
selectAsY	src/org/math/plot/DataSelectPanel.java	/^    public void selectAsY(int row) {$/;"	m	class:DataSelectPanel
selectAsZ	src/org/math/plot/DataSelectPanel.java	/^        public void selectAsZ() {$/;"	m	class:DataSelectPanel.ParameterRow
selectAsZ	src/org/math/plot/DataSelectPanel.java	/^    public void selectAsZ(int row) {$/;"	m	class:DataSelectPanel
selectIndex	src/org/math/plot/components/DataFrame.java	/^    public void selectIndex(int i) {$/;"	m	class:DataFrame
serialVersionUID	src/org/math/plot/DataSelectPanel.java	/^    private static final long serialVersionUID = 419181752327223313L;$/;"	f	class:DataSelectPanel	file:
serialVersionUID	src/org/math/plot/DataSelectTable.java	/^	private static final long serialVersionUID = 41918175232722331L;$/;"	f	class:DataSelectTable	file:
serialVersionUID	src/org/math/plot/FrameView.java	/^	private static final long serialVersionUID = 1L;$/;"	f	class:FrameView	file:
serialVersionUID	src/org/math/plot/MatrixTablePanel.java	/^    private static final long serialVersionUID = 1L;$/;"	f	class:MatrixTablePanel	file:
serialVersionUID	src/org/math/plot/ParametersPanel.java	/^	private static final long serialVersionUID = 1L;$/;"	f	class:ParametersPanel	file:
serialVersionUID	src/org/math/plot/Plot2DPanel.java	/^    private static final long serialVersionUID = 1L;$/;"	f	class:Plot2DPanel	file:
serialVersionUID	src/org/math/plot/Plot3DPanel.java	/^    private static final long serialVersionUID = 1L;$/;"	f	class:Plot3DPanel	file:
serialVersionUID	src/org/math/plot/PlotPanel.java	/^    private static final long serialVersionUID = 1L;$/;"	f	class:PlotPanel	file:
serialVersionUID	src/org/math/plot/canvas/Plot2DCanvas.java	/^	private static final long serialVersionUID = 1L;$/;"	f	class:Plot2DCanvas	file:
serialVersionUID	src/org/math/plot/canvas/Plot3DCanvas.java	/^    private static final long serialVersionUID = 1L;$/;"	f	class:Plot3DCanvas	file:
serialVersionUID	src/org/math/plot/components/DataFrame.java	/^    private static final long serialVersionUID = 1L;$/;"	f	class:DataFrame	file:
serialVersionUID	src/org/math/plot/components/DataToolBar.java	/^	private static final long serialVersionUID = 1L;$/;"	f	class:DataToolBar	file:
serialVersionUID	src/org/math/plot/components/DatasFrame.java	/^		private static final long serialVersionUID = 1L;$/;"	f	class:DatasFrame.DataPanel	file:
serialVersionUID	src/org/math/plot/components/DatasFrame.java	/^	private static final long serialVersionUID = 1L;$/;"	f	class:DatasFrame	file:
serialVersionUID	src/org/math/plot/components/LegendPanel.java	/^        private static final long serialVersionUID = 1L;$/;"	f	class:LegendPanel.Legend	file:
serialVersionUID	src/org/math/plot/components/LegendPanel.java	/^    private static final long serialVersionUID = 1L;$/;"	f	class:LegendPanel	file:
serialVersionUID	src/org/math/plot/components/PlotToolBar.java	/^    private static final long serialVersionUID = 1L;$/;"	f	class:PlotToolBar	file:
serialVersionUID	src/org/math/plot/components/ScalesFrame.java	/^        private static final long serialVersionUID = 1L;$/;"	f	class:ScalesFrame.ScalePanel	file:
serialVersionUID	src/org/math/plot/components/ScalesFrame.java	/^    private static final long serialVersionUID = 1L;$/;"	f	class:ScalesFrame	file:
serialVersionUID	src/org/math/plot/plots/Plot.java	/^        private static final long serialVersionUID = 1L;$/;"	f	class:Plot.DefaultDataPanel	file:
serialVersionUID	src/spiking/internode/InterNodeBurningSpike.java	/^	private static final long serialVersionUID = 4390183727488402447L;$/;"	f	class:InterNodeBurningSpike	file:
serialVersionUID	src/spiking/internode/InterNodeSpike.java	/^	private static final long serialVersionUID = -6892509210757020267L;$/;"	f	class:InterNodeSpike	file:
serialVersionUID	src/spiking/node/NodesManager.java	/^	private final static long serialVersionUID = -4781040115396333609L;$/;"	f	class:NodesManager	file:
serialVersionUID	src/spiking/node/NodesManager.java~	/^	private final static long serialVersionUID = -4781040115396333609L;$/;"	f	class:NodesManager	file:
serialVersionUID	src/spiking/node/SpikingSynapse.java	/^	private static final long serialVersionUID = -7182857769712861723L;$/;"	f	class:SpikingSynapse	file:
serialVersionUID	src/spiking/node/Synapse.java	/^	private static final long serialVersionUID = -4428703256832002027L;$/;"	f	class:Synapse	file:
serialVersionUID	src/spiking/node/spikes/FixedBurnSpike.java	/^	private static final long serialVersionUID = 202189250921075L;$/;"	f	class:FixedBurnSpike	file:
serialVersionUID	src/utils/exceptions/BadCurveException.java	/^	private static final long serialVersionUID = -667775583623091462L;$/;"	f	class:BadCurveException	file:
serialVersionUID	src/utils/exceptions/BadParametersException.java	/^	private static final long serialVersionUID = -667775583623091462L;$/;"	f	class:BadParametersException	file:
serialVersionUID	src/utils/plotter/ScatterPlotter.java	/^	private static final long serialVersionUID = 5840221804907296764L;$/;"	f	class:ScatterPlotter	file:
serialVersionUID	src/utils/tools/LongCouple.java	/^	private static final long serialVersionUID = 2986440218028674578L;$/;"	f	class:LongCouple	file:
serialVersionUID	src/utils/tools/NiceNode.java	/^	private static final long serialVersionUID = 4284840399532187183L;$/;"	f	class:NiceNode	file:
serialVersionUID	src/utils/tools/NiceQueue.java	/^	private static final long serialVersionUID = 3248671994878955651L;$/;"	f	class:NiceQueue	file:
serialize_after	src/utils/statistics/StatisticsCollector.java	/^	private final long serialize_after = 10000l;$/;"	f	class:StatisticsCollector	file:
setAction	src/org/math/plot/ParametersPanel.java	/^	public void setAction(Runnable t) {$/;"	m	class:ParametersPanel
setActionMode	src/org/math/plot/PlotPanel.java	/^    public void setActionMode(int am) {$/;"	m	class:PlotPanel
setActionMode	src/org/math/plot/canvas/PlotCanvas.java	/^    public void setActionMode(int am) {$/;"	m	class:PlotCanvas
setAdjustBounds	src/org/math/plot/PlotPanel.java	/^    public void setAdjustBounds(boolean adjust) {$/;"	m	class:PlotPanel
setAdjustBounds	src/org/math/plot/canvas/PlotCanvas.java	/^    public void setAdjustBounds(boolean adjust) {$/;"	m	class:PlotCanvas
setAmplitude	src/spiking/node/NodesInterconnection.java	/^	public void setAmplitude(Double amplitude) {$/;"	m	class:NodesInterconnection
setAmplitudeStdDeviation	src/spiking/node/NodesInterconnection.java	/^	public void setAmplitudeStdDeviation(Double amplitudeStdDeviation) {$/;"	m	class:NodesInterconnection
setAppearence	src/org/math/plot/ParametersPanel.java	/^	private void setAppearence() {$/;"	m	class:ParametersPanel	file:
setAutoBounds	src/org/math/plot/PlotPanel.java	/^    public void setAutoBounds() {$/;"	m	class:PlotPanel
setAutoBounds	src/org/math/plot/PlotPanel.java	/^    public void setAutoBounds(int axe) {$/;"	m	class:PlotPanel
setAutoBounds	src/org/math/plot/canvas/PlotCanvas.java	/^    public void setAutoBounds() {$/;"	m	class:PlotCanvas
setAutoBounds	src/org/math/plot/canvas/PlotCanvas.java	/^    public void setAutoBounds(int axe) {$/;"	m	class:PlotCanvas
setAvg_neuronal_signal_speed	src/utils/configuration/SpikingSimulatorCfg.java	/^	public void setAvg_neuronal_signal_speed(Double avg_Neuronal_Signal_Speed) {$/;"	m	class:SpikingSimulatorCfg
setAxesScales	src/org/math/plot/plotObjects/Base.java	/^	public void setAxesScales(String[] scales) {$/;"	m	class:Base
setAxesScales	src/org/math/plot/plotObjects/Base.java	/^	public void setAxesScales(int i, String scale) {$/;"	m	class:Base
setAxiScale	src/org/math/plot/canvas/PlotCanvas.java	/^    public void setAxiScale(int axe, String scale) {$/;"	m	class:PlotCanvas
setAxisLabel	src/org/math/plot/PlotPanel.java	/^    public void setAxisLabel(int axe, String label) {$/;"	m	class:PlotPanel
setAxisLabel	src/org/math/plot/canvas/PlotCanvas.java	/^    public void setAxisLabel(int axe, String label) {$/;"	m	class:PlotCanvas
setAxisLabels	src/org/math/plot/PlotPanel.java	/^    public void setAxisLabels(String... labels) {$/;"	m	class:PlotPanel
setAxisLabels	src/org/math/plot/canvas/PlotCanvas.java	/^    public void setAxisLabels(String... labels) {$/;"	m	class:PlotCanvas
setAxisScale	src/org/math/plot/PlotPanel.java	/^    public void setAxisScale(int axe, String scale) {$/;"	m	class:PlotPanel
setAxisScales	src/org/math/plot/PlotPanel.java	/^    public void setAxisScales(String... scales) {$/;"	m	class:PlotPanel
setAxisScales	src/org/math/plot/canvas/PlotCanvas.java	/^    public void setAxisScales(String... scales) {$/;"	m	class:PlotCanvas
setAxonNeuronId	src/spiking/node/Synapse.java	/^	public void setAxonNeuronId(Long axonNeuronId) {$/;"	m	class:Synapse
setAxonRegionId	src/spiking/node/Synapse.java	/^	public void setAxonRegionId(Integer axonRegionId) {$/;"	m	class:Synapse
setBadCurve	src/utils/statistics/StatisticsCollector.java	/^	public void setBadCurve(){$/;"	m	class:StatisticsCollector
setBase	src/org/math/plot/plotObjects/BasePlot.java	/^	public void setBase(Base b) {$/;"	m	class:BasePlot
setBaseOffset	src/org/math/plot/render/AbstractDrawer.java	/^    public void setBaseOffset(double... _boffset) {$/;"	m	class:AbstractDrawer
setBn	src/utils/configuration/NodeCfg.java	/^	public void setBn(Integer bn) {$/;"	m	class:NodeCfg
setBounds	src/org/math/plot/components/ScalesFrame.java	/^        private void setBounds() {$/;"	m	class:ScalesFrame.ScalePanel	file:
setBounds	src/org/math/plot/plotObjects/Base.java	/^	private void setBounds(int i, double Xmi, double Xma) {$/;"	m	class:Base	file:
setBoundsAuto	src/org/math/plot/components/ScalesFrame.java	/^        private void setBoundsAuto() {$/;"	m	class:ScalesFrame.ScalePanel	file:
setBurnTime	src/spiking/node/SpikingSynapse.java	/^	public void setBurnTime(Double burnTime) {$/;"	m	class:SpikingSynapse
setC	src/utils/configuration/NeuManCfg.java	/^	public void setC(Double c) {$/;"	m	class:NeuManCfg
setColor	src/org/math/plot/plotObjects/Axis.java	/^	public void setColor(Color c) {$/;"	m	class:Axis
setColor	src/org/math/plot/plotObjects/BasePlot.java	/^	public void setColor(Color c) {$/;"	m	class:BasePlot
setColor	src/org/math/plot/plotObjects/Label.java	/^	public void setColor(Color c) {$/;"	m	class:Label
setColor	src/org/math/plot/plotObjects/Line.java	/^	public void setColor(Color c) {$/;"	m	class:Line
setColor	src/org/math/plot/plotObjects/PaintImage.java	/^    public void setColor(Color c) {$/;"	m	class:PaintImage
setColor	src/org/math/plot/plotObjects/Plotable.java	/^	public void setColor(Color c);$/;"	m	interface:Plotable
setColor	src/org/math/plot/plotObjects/RasterImage.java	/^	public void setColor(Color c) {$/;"	m	class:RasterImage
setColor	src/org/math/plot/plots/Plot.java	/^    public void setColor(Color c) {$/;"	m	class:Plot
setColor	src/org/math/plot/render/AWTDrawer.java	/^    public void setColor(Color c) {$/;"	m	class:AWTDrawer
setColor	src/org/math/plot/render/AbstractDrawer.java	/^    public void setColor(Color c) {$/;"	m	class:AbstractDrawer
setComponents	src/org/math/plot/ParametersPanel.java	/^	private void setComponents() {$/;"	m	class:ParametersPanel	file:
setCompressionFactor	src/spiking/node/NodesManager.java	/^	public void setCompressionFactor(double compressionFactor) {$/;"	m	class:NodesManager
setCompressionFactor	src/spiking/node/NodesManager.java~	/^	public void setCompressionFactor(double compressionFactor) {$/;"	m	class:NodesManager
setConnection	src/utils/configuration/SpikingSimulatorCfg.java	/^	public void setConnection(ArrayList<RegionInterconnectionCfg> connection) {$/;"	m	class:SpikingSimulatorCfg
setConnection_probability	src/utils/configuration/RegionInterconnectionCfg.java	/^	public void setConnection_probability(Double connection_probability) {$/;"	m	class:RegionInterconnectionCfg
setConnections	src/utils/configuration/SpikingSimulatorCfg.java	/^	public void setConnections(ArrayList<RegionInterconnectionCfg> connections) {$/;"	m	class:SpikingSimulatorCfg
setCoord	src/org/math/plot/plotObjects/Label.java	/^	public void setCoord(double... _c) {$/;"	m	class:Label
setCorner	src/org/math/plot/plotObjects/Label.java	/^	public void setCorner(double north_south, double east_west) {$/;"	m	class:Label
setCurrentTime	src/spiking/controllers/node/NodeThread.java	/^	public void setCurrentTime(double currentTime) {$/;"	m	class:NodeThread
setD	src/utils/configuration/NeuManCfg.java	/^	public void setD(Double d) {$/;"	m	class:NeuManCfg
setData	src/org/math/plot/DataSelectPanel.java	/^    public void setData(Object[][] data) {$/;"	m	class:DataSelectPanel
setData	src/org/math/plot/DataSelectTable.java	/^	public void setData(Object[][] data) {$/;"	m	class:DataSelectTable
setData	src/org/math/plot/plots/BoxPlot2D.java	/^    public void setData(double[][] d) {$/;"	m	class:BoxPlot2D
setData	src/org/math/plot/plots/BoxPlot2D.java	/^    public void setData(double[][] d, double[][] w) {$/;"	m	class:BoxPlot2D
setData	src/org/math/plot/plots/BoxPlot3D.java	/^    public void setData(double[][] d) {$/;"	m	class:BoxPlot3D
setData	src/org/math/plot/plots/BoxPlot3D.java	/^    public void setData(double[][] d, double[][] w) {$/;"	m	class:BoxPlot3D
setData	src/org/math/plot/plots/CloudPlot2D.java	/^    public void setData(double[][] d) {$/;"	m	class:CloudPlot2D
setData	src/org/math/plot/plots/CloudPlot3D.java	/^    public void setData(double[][] d) {$/;"	m	class:CloudPlot3D
setData	src/org/math/plot/plots/DensityLayerPlot.java	/^	public void setData(double[][] d) {$/;"	m	class:DensityLayerPlot
setData	src/org/math/plot/plots/GaussianDensityLayerPlot.java	/^	public void setData(double[][] d) {$/;"	m	class:GaussianDensityLayerPlot
setData	src/org/math/plot/plots/GridPlot3D.java	/^    public void setData(double[][] _Z) {$/;"	m	class:GridPlot3D
setData	src/org/math/plot/plots/HistogramPlot2D.java	/^    public void setData(double[][] d) {$/;"	m	class:HistogramPlot2D
setData	src/org/math/plot/plots/HistogramPlot2D.java	/^    public void setData(double[][] d, double w) {$/;"	m	class:HistogramPlot2D
setData	src/org/math/plot/plots/HistogramPlot2D.java	/^    public void setData(double[][] d, double[] w) {$/;"	m	class:HistogramPlot2D
setData	src/org/math/plot/plots/HistogramPlot3D.java	/^    public void setData(double[][] d) {$/;"	m	class:HistogramPlot3D
setData	src/org/math/plot/plots/HistogramPlot3D.java	/^    public void setData(double[][] d, double... w) {$/;"	m	class:HistogramPlot3D
setData	src/org/math/plot/plots/HistogramPlot3D.java	/^    public void setData(double[][] d, double[][] w) {$/;"	m	class:HistogramPlot3D
setData	src/org/math/plot/plots/Plot.java	/^    public abstract void setData(double[][] d);$/;"	m	class:Plot
setData	src/org/math/plot/plots/QuantileLayerPlot.java	/^	public void setData(double[][] d) {$/;"	m	class:QuantileLayerPlot
setData	src/org/math/plot/plots/ScatterPlot.java	/^    public void setData(double[][] d) {$/;"	m	class:ScatterPlot
setData	src/org/math/plot/plots/VectorLayerPlot.java	/^	public void setData(double[][] v) {$/;"	m	class:VectorLayerPlot
setDataFrame	src/org/math/plot/canvas/PlotCanvas.java	/^    public void setDataFrame(DataFrame dataFrame) {$/;"	m	class:PlotCanvas
setDataWidth	src/org/math/plot/plots/BoxPlot2D.java	/^    public void setDataWidth(double[][] w) {$/;"	m	class:BoxPlot2D
setDataWidth	src/org/math/plot/plots/BoxPlot3D.java	/^    public void setDataWidth(double[][] w) {$/;"	m	class:BoxPlot3D
setDataWidth	src/org/math/plot/plots/HistogramPlot2D.java	/^    public void setDataWidth(double w) {$/;"	m	class:HistogramPlot2D
setDataWidth	src/org/math/plot/plots/HistogramPlot2D.java	/^    public void setDataWidth(double[] w) {$/;"	m	class:HistogramPlot2D
setDataWidth	src/org/math/plot/plots/HistogramPlot3D.java	/^    public void setDataWidth(double... w) {$/;"	m	class:HistogramPlot3D
setDataWidth	src/org/math/plot/plots/HistogramPlot3D.java	/^    public void setDataWidth(double[][] w) {$/;"	m	class:HistogramPlot3D
setDataX	src/org/math/plot/plots/GridPlot3D.java	/^    public void setDataX(double[] _X) {$/;"	m	class:GridPlot3D
setDataXYZ	src/org/math/plot/plots/GridPlot3D.java	/^    public void setDataXYZ(double[] _X, double[] _Y, double[][] _Z) {$/;"	m	class:GridPlot3D
setDataY	src/org/math/plot/plots/GridPlot3D.java	/^    public void setDataY(double[] _Y) {$/;"	m	class:GridPlot3D
setDataZ	src/org/math/plot/plots/GridPlot3D.java	/^    public void setDataZ(double[][] _Z) {$/;"	m	class:GridPlot3D
setDebug	src/spiking/node/NodesManager.java	/^	public void setDebug(Boolean debug){$/;"	m	class:NodesManager
setDebug	src/spiking/node/NodesManager.java~	/^	public void setDebug(Boolean debug){$/;"	m	class:NodesManager
setDebug	src/spiking/simulator/SpikingNeuralSimulator.java	/^	public void setDebug(Boolean debug){$/;"	m	class:SpikingNeuralSimulator
setDefaultCloseOperation	src/org/math/plot/components/ScalesFrame.java	/^    public void setDefaultCloseOperation(int operation) {$/;"	m	class:ScalesFrame
setDefaultZoom	src/org/math/plot/Plot3DPanel.java	/^    public void setDefaultZoom(double zoom_factor) {$/;"	m	class:Plot3DPanel
setDefaultZoom	src/org/math/plot/canvas/Plot3DCanvas.java	/^    public void setDefaultZoom(double zoom_factor) {$/;"	m	class:Plot3DCanvas
setDendriteNeuronId	src/spiking/node/Synapse.java	/^	public void setDendriteNeuronId(Long dendriteNeuronId) {$/;"	m	class:Synapse
setDendriteRegionId	src/spiking/node/Synapse.java	/^	public void setDendriteRegionId(Integer dendriteRegionId) {$/;"	m	class:Synapse
setDotPattern	src/org/math/plot/plots/ScatterPlot.java	/^    public void setDotPattern(boolean[][] t) {$/;"	m	class:ScatterPlot
setDotPattern	src/org/math/plot/plots/ScatterPlot.java	/^    public void setDotPattern(int t) {$/;"	m	class:ScatterPlot
setDotPattern	src/org/math/plot/render/AbstractDrawer.java	/^    public void setDotPattern(boolean[][] _dot_pattern) {$/;"	m	class:AbstractDrawer
setDotRadius	src/org/math/plot/render/AbstractDrawer.java	/^    public void setDotRadius(int _dot_radius) {$/;"	m	class:AbstractDrawer
setDotType	src/org/math/plot/render/AbstractDrawer.java	/^    public void setDotType(int _dot_type) {$/;"	m	class:AbstractDrawer
setDstRegionId	src/utils/configuration/RegionInterconnectionCfg.java	/^	public void setDstRegionId(Integer second_small_world_id) {$/;"	m	class:RegionInterconnectionCfg
setEditable	src/org/math/plot/PlotPanel.java	/^    public void setEditable(boolean b) {$/;"	m	class:PlotPanel
setEditable	src/org/math/plot/canvas/PlotCanvas.java	/^    public void setEditable(boolean b) {$/;"	m	class:PlotCanvas
setEditable	src/org/math/plot/components/ScalesFrame.java	/^    public void setEditable(boolean e) {$/;"	m	class:ScalesFrame
setEnd	src/org/math/plot/plotObjects/Axis.java	/^	public void setEnd(double[] _end) {$/;"	m	class:Axis
setEtam	src/utils/configuration/NodeCfg.java	/^	public void setEtam(Double etam) {$/;"	m	class:NodeCfg
setEtap	src/utils/configuration/NodeCfg.java	/^	public void setEtap(Double etap) {$/;"	m	class:NodeCfg
setExcitatory_inhibitory_ratio	src/utils/configuration/NodeCfg.java	/^	public void setExcitatory_inhibitory_ratio(Double excitRatio) {$/;"	m	class:NodeCfg
setExp_decay	src/utils/configuration/SpikingSimulatorCfg.java	/^  public void setExp_decay() {$/;"	m	class:SpikingSimulatorCfg
setExperimentName	src/spiking/simulator/SpikingNeuralSimulator.java	/^	public void setExperimentName(String expName) {$/;"	m	class:SpikingNeuralSimulator
setExperimentName	src/utils/experiment/Experiment.java	/^	public static void setExperimentName(String name){$/;"	m	class:Experiment
setExternal_inputs_amplitude	src/utils/configuration/NodeCfg.java	/^	public void setExternal_inputs_amplitude(Double external_inputs_amplitude) {$/;"	m	class:NodeCfg
setExternal_inputs_fireduration	src/utils/configuration/NodeCfg.java	/^	public void setExternal_inputs_fireduration(Integer external_inputs_fireduration) {$/;"	m	class:NodeCfg
setExternal_inputs_firerate	src/utils/configuration/NodeCfg.java	/^	public void setExternal_inputs_firerate(Double external_inputs_firerate) {$/;"	m	class:NodeCfg
setExternal_inputs_number	src/utils/configuration/NodeCfg.java	/^	public void setExternal_inputs_number(Integer external_inputs_number) {$/;"	m	class:NodeCfg
setExternal_inputs_time_phase	src/utils/configuration/NodeCfg.java	/^	public void setExternal_inputs_time_phase(Double external_inputs_time_phase) {$/;"	m	class:NodeCfg
setExternal_inputs_timestep	src/utils/configuration/NodeCfg.java	/^	public void setExternal_inputs_timestep(Integer external_inputs_timestep) {$/;"	m	class:NodeCfg
setExternal_inputs_type	src/utils/configuration/NodeCfg.java	/^	public void setExternal_inputs_type(Integer external_inputs_type) {$/;"	m	class:NodeCfg
setFixedBounds	src/org/math/plot/PlotPanel.java	/^    public void setFixedBounds(double[] min, double[] max) {$/;"	m	class:PlotPanel
setFixedBounds	src/org/math/plot/PlotPanel.java	/^    public void setFixedBounds(int axe, double min, double max) {$/;"	m	class:PlotPanel
setFixedBounds	src/org/math/plot/canvas/PlotCanvas.java	/^    public void setFixedBounds(double[] min, double[] max) {$/;"	m	class:PlotCanvas
setFixedBounds	src/org/math/plot/canvas/PlotCanvas.java	/^    public void setFixedBounds(int axe, double min, double max) {$/;"	m	class:PlotCanvas
setFixedBounds	src/org/math/plot/plotObjects/Base.java	/^	public void setFixedBounds(double[] Xmi, double[] Xma) {$/;"	m	class:Base
setFixedBounds	src/org/math/plot/plotObjects/Base.java	/^	public void setFixedBounds(int i, double Xmi, double Xma) {$/;"	m	class:Base
setFont	src/org/math/plot/PlotPanel.java	/^    public void setFont(Font font) {$/;"	m	class:PlotPanel
setFont	src/org/math/plot/plotObjects/Label.java	/^	public void setFont(Font _font) {$/;"	m	class:Label
setFont	src/org/math/plot/render/AWTDrawer.java	/^    public void setFont(Font f) {$/;"	m	class:AWTDrawer
setFont	src/org/math/plot/render/AbstractDrawer.java	/^    public void setFont(Font f) {$/;"	m	class:AbstractDrawer
setFromExternalInput	src/spiking/node/Synapse.java	/^	public void setFromExternalInput(Boolean fromExternalInput) {$/;"	m	class:Synapse
setGlob_Bn	src/utils/configuration/SpikingSimulatorCfg.java	/^	public void setGlob_Bn(Integer glob_Bn) {$/;"	m	class:SpikingSimulatorCfg
setGlob_IBI	src/utils/configuration/SpikingSimulatorCfg.java	/^	public void setGlob_IBI(Double glob_IBI) {$/;"	m	class:SpikingSimulatorCfg
setGlob_etam	src/utils/configuration/SpikingSimulatorCfg.java	/^	public void setGlob_etam(Double glob_etam) {$/;"	m	class:SpikingSimulatorCfg
setGlob_etap	src/utils/configuration/SpikingSimulatorCfg.java	/^	public void setGlob_etap(Double glob_etap) {$/;"	m	class:SpikingSimulatorCfg
setGlob_external_inputs_amplitude	src/utils/configuration/SpikingSimulatorCfg.java	/^	public void setGlob_external_inputs_amplitude(Double glob_external_inputs_amplitude) {$/;"	m	class:SpikingSimulatorCfg
setGlob_external_inputs_fireduration	src/utils/configuration/SpikingSimulatorCfg.java	/^	public void setGlob_external_inputs_fireduration(Integer glob_external_inputs_fireduration) {$/;"	m	class:SpikingSimulatorCfg
setGlob_external_inputs_firerate	src/utils/configuration/SpikingSimulatorCfg.java	/^	public void setGlob_external_inputs_firerate(Double glob_external_inputs_firerate) {$/;"	m	class:SpikingSimulatorCfg
setGlob_external_inputs_number	src/utils/configuration/SpikingSimulatorCfg.java	/^	public void setGlob_external_inputs_number(Integer glob_external_inputs) {$/;"	m	class:SpikingSimulatorCfg
setGlob_external_inputs_time_offset	src/utils/configuration/SpikingSimulatorCfg.java	/^	public void setGlob_external_inputs_time_offset(Double glob_external_inputs_time_offset) {$/;"	m	class:SpikingSimulatorCfg
setGlob_external_inputs_timestep	src/utils/configuration/SpikingSimulatorCfg.java	/^	public void setGlob_external_inputs_timestep(Integer glob_external_inputs_timestep) {$/;"	m	class:SpikingSimulatorCfg
setGlob_external_inputs_type	src/utils/configuration/SpikingSimulatorCfg.java	/^	public void setGlob_external_inputs_type(Integer glob_external_inputs_type) {$/;"	m	class:SpikingSimulatorCfg
setGlob_k	src/utils/configuration/SpikingSimulatorCfg.java	/^	public void setGlob_k(Integer glob_k) {$/;"	m	class:SpikingSimulatorCfg
setGlob_local_n	src/utils/configuration/SpikingSimulatorCfg.java	/^	public void setGlob_local_n(Long glob_local_n) {$/;"	m	class:SpikingSimulatorCfg
setGlob_mu_w_exc	src/utils/configuration/SpikingSimulatorCfg.java	/^	public void setGlob_mu_w_exc(Double glob_mu_w_exc) {$/;"	m	class:SpikingSimulatorCfg
setGlob_mu_w_inh	src/utils/configuration/SpikingSimulatorCfg.java	/^	public void setGlob_mu_w_inh(Double glob_mu_w_inh) {$/;"	m	class:SpikingSimulatorCfg
setGlob_plasticity	src/utils/configuration/SpikingSimulatorCfg.java	/^	public void setGlob_plasticity(Boolean glob_plasticity) {$/;"	m	class:SpikingSimulatorCfg
setGlob_pw_max	src/utils/configuration/SpikingSimulatorCfg.java	/^	public void setGlob_pw_max(Double glob_pw_max) {$/;"	m	class:SpikingSimulatorCfg
setGlob_rewiring_P	src/utils/configuration/SpikingSimulatorCfg.java	/^	public void setGlob_rewiring_P(Double glob_rewiring_P) {$/;"	m	class:SpikingSimulatorCfg
setGlob_taum	src/utils/configuration/SpikingSimulatorCfg.java	/^	public void setGlob_taum(Double glob_taum) {$/;"	m	class:SpikingSimulatorCfg
setGlob_taup	src/utils/configuration/SpikingSimulatorCfg.java	/^	public void setGlob_taup(Double glob_taup) {$/;"	m	class:SpikingSimulatorCfg
setGlob_to	src/utils/configuration/SpikingSimulatorCfg.java	/^	public void setGlob_to(Double glob_to) {$/;"	m	class:SpikingSimulatorCfg
setGlob_w_pre_exc	src/utils/configuration/SpikingSimulatorCfg.java	/^	public void setGlob_w_pre_exc(Double glob_w_pre_exc) {$/;"	m	class:SpikingSimulatorCfg
setGlob_w_pre_inh	src/utils/configuration/SpikingSimulatorCfg.java	/^	public void setGlob_w_pre_inh(Double glob_w_pre_inh) {$/;"	m	class:SpikingSimulatorCfg
setGlobal_neuron_manager	src/utils/configuration/SpikingSimulatorCfg.java	/^	public void setGlobal_neuron_manager(NeuManCfg global_neuron_manager) {$/;"	m	class:SpikingSimulatorCfg
setGradient	src/org/math/plot/render/AWTDrawer.java	/^    public void setGradient(double[] xy0, Color c0, double[] xy1, Color c1) {$/;"	m	class:AWTDrawer
setGradient	src/org/math/plot/render/AbstractDrawer.java	/^    public abstract void setGradient(double[] xy0, Color c0, double[] xy1, Color c1);$/;"	m	class:AbstractDrawer
setGradientColor	src/org/math/plot/plotObjects/Line.java	/^	public void setGradientColor(Color c) {$/;"	m	class:Line
setGridVisible	src/org/math/plot/plotObjects/Axis.java	/^	public void setGridVisible(boolean v) {$/;"	m	class:Axis
setGridVisible	src/org/math/plot/plotObjects/BasePlot.java	/^	public void setGridVisible(int i, boolean v) {$/;"	m	class:BasePlot
setHeaders	src/org/math/plot/MatrixTablePanel.java	/^    public void setHeaders(String[] h) {$/;"	m	class:MatrixTablePanel
setIBI	src/utils/configuration/NodeCfg.java	/^	public void setIBI(Double iBI) {$/;"	m	class:NodeCfg
setId	src/utils/configuration/NodeCfg.java	/^	public void setId(Integer id) {$/;"	m	class:NodeCfg
setInterNodeSynapse	src/spiking/node/SynapsesManager.java	/^	public void setInterNodeSynapse(Synapse syn){$/;"	m	class:SynapsesManager
setIntraNodePostSynapticWeight	src/spiking/node/SynapsesManager.java	/^	public void setIntraNodePostSynapticWeight(Synapse syn, Double postsynaptic_w) {$/;"	m	class:SynapsesManager
setIntraNodeSynapse	src/spiking/node/SynapsesManager.java	/^	public void setIntraNodeSynapse(Synapse syn){$/;"	m	class:SynapsesManager
setK	src/utils/configuration/NodeCfg.java	/^	public void setK(Integer k) {$/;"	m	class:NodeCfg
setLabelAngle	src/org/math/plot/plotObjects/Axis.java	/^	public void setLabelAngle(double angle) {$/;"	m	class:Axis
setLabelFont	src/org/math/plot/plotObjects/Axis.java	/^	public void setLabelFont(Font f) {$/;"	m	class:Axis
setLabelPosition	src/org/math/plot/plotObjects/Axis.java	/^	public void setLabelPosition(double... _p) {$/;"	m	class:Axis
setLabelText	src/org/math/plot/plotObjects/Axis.java	/^	public void setLabelText(String _t) {$/;"	m	class:Axis
setLastBurningTime	src/spiking/node/Synapse.java	/^	public void setLastBurningTime(Double lastBurningTime) {$/;"	m	class:Synapse
setLastBurningTime	src/spiking/node/neuron/Neuron.java	/^	public void setLastBurningTime(Double lastBurningTime) {$/;"	m	class:Neuron
setLastBurningTime	src/spiking/node/neuron/NodeNeuronsManager.java	/^	public void setLastBurningTime(Long neuronId, Double lastBurningTime){$/;"	m	class:NodeNeuronsManager
setLastFireTime	src/spiking/node/plasticity/Afferent.java	/^	public void setLastFireTime(Double lastFireTime) {$/;"	m	class:Afferent
setLastFiringTime	src/spiking/node/neuron/Neuron.java	/^	public void setLastFiringTime(Double lastFiringTime) {$/;"	m	class:Neuron
setLastFiringTime	src/spiking/node/neuron/NodeNeuronsManager.java	/^	public void setLastFiringTime(Long neuronId, Double val){$/;"	m	class:NodeNeuronsManager
setLegend	src/org/math/plot/plotObjects/Axis.java	/^	public void setLegend(String _label) {$/;"	m	class:Axis
setLegend	src/org/math/plot/plotObjects/BasePlot.java	/^	public void setLegend(String[] as) {$/;"	m	class:BasePlot
setLegend	src/org/math/plot/plotObjects/BasePlot.java	/^	public void setLegend(int i, String as) {$/;"	m	class:BasePlot
setLegendOrientation	src/org/math/plot/PlotPanel.java	/^    public void setLegendOrientation(String location) {$/;"	m	class:PlotPanel
setLenght	src/spiking/node/Synapse.java	/^	public void setLenght(Double length) {$/;"	m	class:Synapse
setLength	src/spiking/node/NodesInterconnection.java	/^	public void setLength(Double length){$/;"	m	class:NodesInterconnection
setLengthShapeParameter	src/spiking/node/NodesInterconnection.java	/^	public void setLengthShapeParameter(Double lengthShapeParameter) {$/;"	m	class:NodesInterconnection
setLif	src/utils/configuration/SpikingSimulatorCfg.java	/^  public void setLif(Boolean lif) {$/;"	m	class:SpikingSimulatorCfg
setLightLabelAngle	src/org/math/plot/plotObjects/Axis.java	/^	public void setLightLabelAngle(double angle) {$/;"	m	class:Axis
setLightLabelFont	src/org/math/plot/plotObjects/Axis.java	/^	public void setLightLabelFont(Font f) {$/;"	m	class:Axis
setLightLabelText	src/org/math/plot/plotObjects/Axis.java	/^	public void setLightLabelText(String[] _lightLabelnames) {$/;"	m	class:Axis
setLightLabels	src/org/math/plot/plotObjects/Axis.java	/^	public void setLightLabels() {$/;"	m	class:Axis
setLightLines	src/org/math/plot/plotObjects/Axis.java	/^	private void setLightLines() {$/;"	m	class:Axis	file:
setLineType	src/org/math/plot/render/AbstractDrawer.java	/^    public void setLineType(int _line_type) {$/;"	m	class:AbstractDrawer
setLineWidth	src/org/math/plot/render/AbstractDrawer.java	/^    public void setLineWidth(int _line_width) {$/;"	m	class:AbstractDrawer
setListeners	src/org/math/plot/components/ScalesFrame.java	/^        private void setListeners() {$/;"	m	class:ScalesFrame.ScalePanel	file:
setLtdFlag	src/spiking/node/plasticity/Afferent.java	/^	public void setLtdFlag(Boolean ltdFlag) {$/;"	m	class:Afferent
setLtpFlag	src/spiking/node/plasticity/Afferent.java	/^	public void setLtpFlag(Boolean ltpFlag) {$/;"	m	class:Afferent
setMask	src/spiking/simulator/SpikingNeuralSimulator.java	/^	public void setMask(BigInteger mask){$/;"	m	class:SpikingNeuralSimulator
setMatlab	src/utils/statistics/StatisticsCollector.java	/^	public  void setMatlab() {$/;"	m	class:StatisticsCollector
setMatrix	src/org/math/plot/MatrixTablePanel.java	/^    public void setMatrix(Object[][] m) {$/;"	m	class:MatrixTablePanel
setMinMaxNe_xn_ratios	src/utils/statistics/StatisticsCollector.java	/^	public void setMinMaxNe_xn_ratios(Double minNe_xn_ratio, Double maxNe_xn_ratio){$/;"	m	class:StatisticsCollector
setModel	src/org/math/plot/MatrixTablePanel.java	/^    private void setModel() {$/;"	m	class:MatrixTablePanel	file:
setMu_w_exc	src/spiking/node/Node.java	/^	public void setMu_w_exc(Double mu_w_exc) {$/;"	m	class:Node
setMu_w_exc	src/utils/configuration/NodeCfg.java	/^	public void setMu_w_exc(Double mu_w_exc) {$/;"	m	class:NodeCfg
setMu_w_inh	src/spiking/node/Node.java	/^	public void setMu_w_inh(Double mu_w_inh) {$/;"	m	class:Node
setMu_w_inh	src/utils/configuration/NodeCfg.java	/^	public void setMu_w_inh(Double mu_w_inh) {$/;"	m	class:NodeCfg
setN	src/utils/configuration/NodeCfg.java	/^	public void setN(Long n) {$/;"	m	class:NodeCfg
setName	src/org/math/plot/plots/Plot.java	/^    public void setName(String n) {$/;"	m	class:Plot
setNeuron_manager	src/utils/configuration/NodeCfg.java	/^	public void setNeuron_manager(NeuManCfg neuron_manager){$/;"	m	class:NodeCfg
setNodes	src/utils/configuration/SpikingSimulatorCfg.java	/^	public void setNodes(ArrayList<NodeCfg> nodes) {$/;"	m	class:SpikingSimulatorCfg
setNodes2checkMask	src/utils/statistics/StatisticsCollector.java	/^	public void setNodes2checkMask(BigInteger mask){$/;"	m	class:StatisticsCollector
setNotable	src/org/math/plot/PlotPanel.java	/^    public void setNotable(boolean b) {$/;"	m	class:PlotPanel
setNotable	src/org/math/plot/canvas/PlotCanvas.java	/^    public void setNotable(boolean b) {$/;"	m	class:PlotCanvas
setNoteCoords	src/org/math/plot/PlotPanel.java	/^    public void setNoteCoords(boolean b) {$/;"	m	class:PlotPanel
setNoteCoords	src/org/math/plot/canvas/PlotCanvas.java	/^    public void setNoteCoords(boolean b) {$/;"	m	class:PlotCanvas
setOldPostsynapticWeight	src/spiking/node/plasticity/Afferent.java	/^	public void setOldPostsynapticWeight(Double oldPostSynapticWeight) {$/;"	m	class:Afferent
setOrigin	src/org/math/plot/plotObjects/Axis.java	/^	public void setOrigin(double[] _origin) {$/;"	m	class:Axis
setPanel	src/org/math/plot/components/DataFrame.java	/^    private void setPanel() {$/;"	m	class:DataFrame	file:
setPanel	src/org/math/plot/components/ScalesFrame.java	/^    private void setPanel() {$/;"	m	class:ScalesFrame	file:
setPlasticity	src/utils/configuration/NodeCfg.java	/^	public void setPlasticity(Boolean plasticity) {$/;"	m	class:NodeCfg
setPlasticity	src/utils/configuration/SpikingSimulatorCfg.java	/^	public void setPlasticity(Boolean plasticity) {$/;"	m	class:SpikingSimulatorCfg
setPlot	src/org/math/plot/PlotPanel.java	/^    public void setPlot(int I, Plot p) {$/;"	m	class:PlotPanel
setPlot	src/org/math/plot/canvas/PlotCanvas.java	/^    public void setPlot(int I, Plot p) {$/;"	m	class:PlotCanvas
setPlotToolBarOrientation	src/org/math/plot/PlotPanel.java	/^    public void setPlotToolBarOrientation(String location) {$/;"	m	class:PlotPanel
setPostsynapticWeight	src/spiking/node/Synapse.java	/^	public void setPostsynapticWeight(Double post_synaptic_weight) {$/;"	m	class:Synapse
setPreSynapticWeight	src/spiking/node/neuron/Neuron.java	/^	public void setPreSynapticWeight(Double preSynapticWeight) {$/;"	m	class:Neuron
setPreSynapticWeight	src/spiking/node/neuron/NodeNeuronsManager.java	/^	public void setPreSynapticWeight(Long neuronId, Double val){$/;"	m	class:NodeNeuronsManager
setPrecisionUnit	src/org/math/plot/plotObjects/Base.java	/^	private void setPrecisionUnit(int i, double Xmi, double Xma) {$/;"	m	class:Base	file:
setPw_max	src/utils/configuration/NodeCfg.java	/^	public void setPw_max(Double pw_max) {$/;"	m	class:NodeCfg
setR	src/utils/configuration/SpikingSimulatorCfg.java	/^	public void setR(Double R) {$/;"	m	class:SpikingSimulatorCfg
setRegion	src/utils/configuration/SpikingSimulatorCfg.java	/^	public void setRegion(ArrayList<NodeCfg> region) {$/;"	m	class:SpikingSimulatorCfg
setRoundBounds	src/org/math/plot/plotObjects/Base.java	/^	public void setRoundBounds(double[] Xmi, double[] Xma) {$/;"	m	class:Base
setRoundBounds	src/org/math/plot/plotObjects/Base.java	/^	public void setRoundBounds(int i, double Xmi, double Xma) {$/;"	m	class:Base
setScale	src/org/math/plot/components/ScalesFrame.java	/^        private void setScale() {$/;"	m	class:ScalesFrame.ScalePanel	file:
setScalesFrame	src/org/math/plot/canvas/PlotCanvas.java	/^    public void setScalesFrame(JFrame scalesFrame) {$/;"	m	class:PlotCanvas
setScreenOffset	src/org/math/plot/render/AbstractDrawer.java	/^    public void setScreenOffset(int... _soffset) {$/;"	m	class:AbstractDrawer
setSlicing	src/org/math/plot/plotObjects/Axis.java	/^	private void setSlicing() {$/;"	m	class:Axis	file:
setSmall_world_topology	src/utils/configuration/NodeCfg.java	/^	public void setSmall_world_topology(Boolean smallWorld) {$/;"	m	class:NodeCfg
setSpikeTime	src/spiking/node/external_inputs/ExternalInput.java	/^	public void setSpikeTime(int neuron, int bin, Double time){$/;"	m	class:ExternalInput
setSrcRegionId	src/utils/configuration/RegionInterconnectionCfg.java	/^	public void setSrcRegionId(Integer srcRegionId) {$/;"	m	class:RegionInterconnectionCfg
setStandardExternalInput	src/spiking/node/Node.java	/^	public void setStandardExternalInput(){$/;"	m	class:Node
setState	src/spiking/node/neuron/Neuron.java	/^	public void setState(Double state) {$/;"	m	class:Neuron
setState	src/spiking/node/neuron/NodeNeuronsManager.java	/^	public void setState(Long neuronId, Double val) {$/;"	m	class:NodeNeuronsManager
setStop	src/utils/configuration/SpikingSimulatorCfg.java	/^	public void setStop(int stop) {$/;"	m	class:SpikingSimulatorCfg
setStopTime	src/spiking/controllers/node/NodeThread.java	/^	public void setStopTime(double stopTime) {$/;"	m	class:NodeThread
setStringMap	src/org/math/plot/plotObjects/Axis.java	/^	public void setStringMap(HashMap<String, Double> stringMap) {$/;"	m	class:Axis
setT_arp	src/utils/configuration/NeuManCfg.java	/^	public void setT_arp(Double t_arp) {$/;"	m	class:NeuManCfg
setTags	src/org/math/plot/plots/ScatterPlot.java	/^    public void setTags(String[] tags) {$/;"	m	class:ScatterPlot
setTaum	src/utils/configuration/NodeCfg.java	/^	public void setTaum(Double taum) {$/;"	m	class:NodeCfg
setTaup	src/utils/configuration/NodeCfg.java	/^	public void setTaup(Double taup) {$/;"	m	class:NodeCfg
setText	src/org/math/plot/plotObjects/Label.java	/^	public void setText(String _t) {$/;"	m	class:Label
setTextAngle	src/org/math/plot/render/AbstractDrawer.java	/^    public void setTextAngle(double _angle) {$/;"	m	class:AbstractDrawer
setTextOffset	src/org/math/plot/render/AbstractDrawer.java	/^    public void setTextOffset(double _cornerEast, double _cornerNorth) {$/;"	m	class:AbstractDrawer
setTimeToFire	src/spiking/node/neuron/Neuron.java	/^	public void setTimeToFire(Double timeToFire) {$/;"	m	class:Neuron
setTimeToFire	src/spiking/node/neuron/NodeNeuronsManager.java	/^	public void setTimeToFire(Long neuronId, Double val){$/;"	m	class:NodeNeuronsManager
setTitle	src/org/math/plot/components/ScalesFrame.java	/^        private void setTitle() {$/;"	m	class:ScalesFrame.ScalePanel	file:
setTo	src/utils/configuration/NodeCfg.java	/^	public void setTo(Double to) {$/;"	m	class:NodeCfg
setTotalTime	src/spiking/simulator/SpikingNeuralSimulator.java	/^	private void setTotalTime(double total_time){$/;"	m	class:SpikingNeuralSimulator	file:
setType	src/spiking/node/NodesInterconnection.java	/^	public void setType(int type) {$/;"	m	class:NodesInterconnection
setValueAt	src/org/math/plot/DataSelectTable.java	/^		public void setValueAt(Object value, int rowIndex, int columnIndex) {$/;"	m	class:DataSelectTable.Model
setVisible	src/org/math/plot/components/DataFrame.java	/^    public void setVisible(boolean b) {$/;"	m	class:DataFrame
setVisible	src/org/math/plot/components/ScalesFrame.java	/^    public void setVisible(boolean b) {$/;"	m	class:ScalesFrame
setVisible	src/org/math/plot/plotObjects/Axis.java	/^	public void setVisible(boolean v) {$/;"	m	class:Axis
setVisible	src/org/math/plot/plotObjects/BasePlot.java	/^	public void setVisible(boolean v) {$/;"	m	class:BasePlot
setVisible	src/org/math/plot/plotObjects/BasePlot.java	/^	public void setVisible(int i, boolean v) {$/;"	m	class:BasePlot
setVisible	src/org/math/plot/plotObjects/Label.java	/^	public void setVisible(boolean v) {$/;"	m	class:Label
setVisible	src/org/math/plot/plotObjects/Line.java	/^	public void setVisible(boolean v) {$/;"	m	class:Line
setVisible	src/org/math/plot/plotObjects/PaintImage.java	/^    public void setVisible(boolean v) {$/;"	m	class:PaintImage
setVisible	src/org/math/plot/plotObjects/Plotable.java	/^	public void setVisible(boolean v);$/;"	m	interface:Plotable
setVisible	src/org/math/plot/plotObjects/RasterImage.java	/^	public void setVisible(boolean v) {$/;"	m	class:RasterImage
setVisible	src/org/math/plot/plots/Plot.java	/^    public void setVisible(boolean v) {$/;"	m	class:Plot
setVisible	src/utils/plotter/ScatterPlotter.java	/^	public void setVisible(){$/;"	m	class:ScatterPlotter
setW_pre_exc	src/utils/configuration/NodeCfg.java	/^	public void setW_pre_exc(Double exc_ampl) {$/;"	m	class:NodeCfg
setW_pre_inh	src/utils/configuration/NodeCfg.java	/^	public void setW_pre_inh(Double inh_ampl) {$/;"	m	class:NodeCfg
set_filename	src/utils/statistics/StatisticsCollector.java	/^	public void set_filename(String filename){$/;"	m	class:StatisticsCollector
set_rewiring_P	src/utils/configuration/NodeCfg.java	/^	public void set_rewiring_P(Double prew) {$/;"	m	class:NodeCfg
shortAsUnsigned	src/org/math/plot/utils/NumbersUtils.java	/^    public static int shortAsUnsigned(short value) {$/;"	m	class:NumbersUtils
shuffleArray	src/utils/tools/Shuffler.java	/^	public static int [] shuffleArray(int n){$/;"	m	class:Shuffler
shuffleArray	src/utils/tools/Shuffler.java	/^	public static void shuffleArray(HTreeMap<Long, Long> shuffled, long n){$/;"	m	class:Shuffler
sigma	src/org/math/plot/plots/GaussianDensityLayerPlot.java	/^	double[] sigma;$/;"	f	class:GaussianDensityLayerPlot
sigma_omega	src/spiking/node/NodesInterconnection.java	/^	private Double sigma_omega=0.0;$/;"	f	class:NodesInterconnection	file:
sign	src/org/math/plot/render/AWTDrawer.java	/^    static double sign(double x) {$/;"	m	class:AWTDrawer
signum	src/org/math/plot/utils/FastMath.java	/^    public static double signum(double d) {$/;"	m	class:FastMath
signum	src/org/math/plot/utils/FastMath.java	/^    public static float signum(float f) {$/;"	m	class:FastMath
signum	src/org/math/plot/utils/NumbersUtils.java	/^    public static int signum(int a) {$/;"	m	class:NumbersUtils
signum	src/org/math/plot/utils/NumbersUtils.java	/^    public static int signum(long a) {$/;"	m	class:NumbersUtils
sim	src/spiking/node/NodesManager.java	/^	private SpikingNeuralSimulator sim;$/;"	f	class:NodesManager	file:
sim	src/spiking/node/NodesManager.java~	/^	private SpikingNeuralSimulator sim;$/;"	f	class:NodesManager	file:
simulatedTime	src/utils/statistics/StatisticsCollector.java	/^	private volatile Double simulatedTime=0.0;$/;"	f	class:StatisticsCollector	file:
simulationNeurons	src/spiking/simulator/SpikingNeuralSimulator.java	/^	public final static long simulationNeurons=100l;$/;"	f	class:SpikingNeuralSimulator
sin	src/org/math/plot/render/Projection3D.java	/^    private double sin(double x) {$/;"	m	class:Projection3D	file:
sin	src/org/math/plot/utils/FastMath.java	/^    public static double sin(double angle) {$/;"	m	class:FastMath
sinAndCos	src/org/math/plot/utils/FastMath.java	/^    public static void sinAndCos(double angle, DoubleWrapper sine, DoubleWrapper cosine) {$/;"	m	class:FastMath
sinQuick	src/org/math/plot/utils/FastMath.java	/^    public static double sinQuick(double angle) {$/;"	m	class:FastMath
sinTab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] sinTab = new double[SIN_COS_TABS_SIZE];$/;"	f	class:FastMath	file:
sin_phi	src/org/math/plot/render/Projection3D.java	/^    public double cos_phi, sin_phi, tan_phi, cos_theta, sin_theta, tan_theta;$/;"	f	class:Projection3D
sin_theta	src/org/math/plot/render/Projection3D.java	/^    public double cos_phi, sin_phi, tan_phi, cos_theta, sin_theta, tan_theta;$/;"	f	class:Projection3D
sinh	src/org/math/plot/utils/FastMath.java	/^    public static double sinh(double value) {$/;"	m	class:FastMath
sinhAndCosh	src/org/math/plot/utils/FastMath.java	/^    public static void sinhAndCosh(double value, DoubleWrapper hsine, DoubleWrapper hcosine) {$/;"	m	class:FastMath
size	src/org/math/io/littleendian/LEDataOutputStream.java	/^    public final int size() {$/;"	m	class:LEDataOutputStream
size	src/utils/tools/NiceQueue.java	/^    public int size(){$/;"	m	class:NiceQueue
skipBytes	src/org/math/io/littleendian/LEDataInputStream.java	/^    public int skipBytes(int n) throws IOException {$/;"	m	class:LEDataInputStream
skipBytes	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final int skipBytes(int n) throws IOException {$/;"	m	class:LERandomAccessFile
small_world_topology	src/utils/configuration/NodeCfg.java	/^	private Boolean small_world_topology;$/;"	f	class:NodeCfg	file:
sort	src/org/math/plot/DataSelectPanel.java	/^            private void sort(double[] a) {$/;"	m	class:DataSelectPanel.ParameterRow.Sorting	file:
source	src/org/math/plot/plotObjects/PaintImage.java	/^    protected Paintable source;$/;"	f	class:PaintImage
source	src/org/math/plot/plotObjects/RasterImage.java	/^	File source;$/;"	f	class:RasterImage
sourceRegionId	src/utils/configuration/RegionInterconnectionCfg.java	/^	private Integer sourceRegionId;$/;"	f	class:RegionInterconnectionCfg	file:
spiking.controllers.node	src/spiking/controllers/node/NodeLink.java	/^package spiking.controllers.node;$/;"	p
spiking.controllers.node	src/spiking/controllers/node/NodeThread.java	/^package spiking.controllers.node;$/;"	p
spiking.internode	src/spiking/internode/InterNodeBurningSpike.java	/^package spiking.internode;$/;"	p
spiking.internode	src/spiking/internode/InterNodeSpike.java	/^package spiking.internode;$/;"	p
spiking.node	src/spiking/node/FiringNeuron.java	/^package spiking.node;$/;"	p
spiking.node	src/spiking/node/Node.java	/^package spiking.node;$/;"	p
spiking.node	src/spiking/node/NodesInterconnection.java	/^package spiking.node;$/;"	p
spiking.node	src/spiking/node/NodesManager.java	/^package spiking.node;$/;"	p
spiking.node	src/spiking/node/NodesManager.java~	/^package spiking.node;$/;"	p
spiking.node	src/spiking/node/SpikingSynapse.java	/^package spiking.node;$/;"	p
spiking.node	src/spiking/node/Synapse.java	/^package spiking.node;$/;"	p
spiking.node	src/spiking/node/SynapsesManager.java	/^package spiking.node;$/;"	p
spiking.node.external_inputs	src/spiking/node/external_inputs/ExternalInput.java	/^package spiking.node.external_inputs;$/;"	p
spiking.node.neuron	src/spiking/node/neuron/BurningNeuron.java	/^package spiking.node.neuron;$/;"	p
spiking.node.neuron	src/spiking/node/neuron/Neuron.java	/^package spiking.node.neuron;$/;"	p
spiking.node.neuron	src/spiking/node/neuron/NodeNeuronsManager.java	/^package spiking.node.neuron;$/;"	p
spiking.node.plasticity	src/spiking/node/plasticity/Afferent.java	/^package spiking.node.plasticity;$/;"	p
spiking.node.plasticity	src/spiking/node/plasticity/AfferentManager.java	/^package spiking.node.plasticity;$/;"	p
spiking.node.spikes	src/spiking/node/spikes/FixedBurnSpike.java	/^package spiking.node.spikes;$/;"	p
spiking.simulator	src/spiking/simulator/SpikingNeuralSimulator.java	/^package spiking.simulator;$/;"	p
splitComplete	src/spiking/node/NodesManager.java	/^	public synchronized Boolean splitComplete(Integer nodeId){$/;"	m	class:NodesManager
splitComplete	src/spiking/node/NodesManager.java~	/^	public synchronized Boolean splitComplete(Integer nodeId){$/;"	m	class:NodesManager
splitComplete	src/spiking/simulator/SpikingNeuralSimulator.java	/^	public Boolean splitComplete(Integer nodeId){$/;"	m	class:SpikingNeuralSimulator
splitCount	src/spiking/simulator/SpikingNeuralSimulator.java	/^	private long splitCount = 0;$/;"	f	class:SpikingNeuralSimulator	file:
splitXYf	src/org/math/plot/plots/CloudPlot2D.java	/^    private void splitXYf(double[][] xycard) {$/;"	m	class:CloudPlot2D	file:
splitXYf	src/org/math/plot/plots/CloudPlot3D.java	/^    private void splitXYf(double[][] xycard) {$/;"	m	class:CloudPlot3D	file:
sqr	src/org/math/plot/render/AWTDrawer.java	/^    static double sqr(double x) {$/;"	m	class:AWTDrawer
sqrt	src/org/math/plot/utils/FastMath.java	/^    public static double sqrt(double value) {$/;"	m	class:FastMath
sqrtSlopeHiTab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] sqrtSlopeHiTab = new double[MAX_DOUBLE_EXPONENT-MIN_DOUBLE_EXPONENT+1];$/;"	f	class:FastMath	file:
sqrtSlopeLoTab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] sqrtSlopeLoTab = new double[SQRT_LO_TAB_SIZE];$/;"	f	class:FastMath	file:
sqrtXSqrtHiTab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] sqrtXSqrtHiTab = new double[MAX_DOUBLE_EXPONENT-MIN_DOUBLE_EXPONENT+1];$/;"	f	class:FastMath	file:
sqrtXSqrtLoTab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] sqrtXSqrtLoTab = new double[SQRT_LO_TAB_SIZE];$/;"	f	class:FastMath	file:
srcNeuronId	src/spiking/controllers/node/NodeLink.java	/^	private Integer srcNeuronId;$/;"	f	class:NodeLink	file:
srcNodeId	src/spiking/controllers/node/NodeLink.java	/^	private Integer srcNodeId;$/;"	f	class:NodeLink	file:
startAll	src/spiking/node/NodesManager.java	/^	public void startAll() {$/;"	m	class:NodesManager
startAll	src/spiking/node/NodesManager.java~	/^	public void startAll() {$/;"	m	class:NodesManager
startAll	src/spiking/simulator/SpikingNeuralSimulator.java	/^	public void startAll(){$/;"	m	class:SpikingNeuralSimulator
startTime	src/spiking/controllers/node/NodeThread.java	/^	private double startTime=0.0;$/;"	f	class:NodeThread	file:
state	src/spiking/node/neuron/Neuron.java	/^	private Double state;$/;"	f	class:Neuron	file:
stepInState	src/spiking/node/SpikingSynapse.java	/^	private Double stepInState;$/;"	f	class:SpikingSynapse	file:
stepInState	src/utils/statistics/CollectedBurn.java	/^	private Double stepInState; $/;"	f	class:CollectedBurn	file:
sth	src/spiking/node/neuron/NodeNeuronsManager.java	/^	private Double sth=1+c;$/;"	f	class:NodeNeuronsManager	file:
stop	src/utils/configuration/SpikingSimulatorCfg.java	/^	private int stop;$/;"	f	class:SpikingSimulatorCfg	file:
stopTime	src/spiking/controllers/node/NodeThread.java	/^	private double stopTime=0.0;$/;"	f	class:NodeThread	file:
stream	src/org/math/io/stream/BinaryInputStream.java	/^    private InputStream stream;$/;"	f	class:BinaryInputStream	file:
stream	src/org/math/io/stream/BinaryOutputStream.java	/^    private OutputStream stream;$/;"	f	class:BinaryOutputStream	file:
stringMap	src/org/math/plot/plotObjects/Axis.java	/^	protected HashMap<String, Double> stringMap;$/;"	f	class:Axis
stringToPattern	src/org/math/plot/render/AbstractDrawer.java	/^    public static boolean[] stringToPattern(String empty, String c) {$/;"	m	class:AbstractDrawer
stringToPattern	src/org/math/plot/render/AbstractDrawer.java	/^    public static boolean[][] stringToPattern(String empty, String... c) {$/;"	m	class:AbstractDrawer
subRemainderTwoPi	src/org/math/plot/utils/FastMath.java	/^    private static double subRemainderTwoPi(double x0, double x1, double x2, int e0, int nx) {$/;"	m	class:FastMath	file:
subtractBounded	src/org/math/plot/utils/FastMath.java	/^    public static int subtractBounded(int a, int b) {$/;"	m	class:FastMath
subtractBounded	src/org/math/plot/utils/FastMath.java	/^    public static long subtractBounded(long a, long b) {$/;"	m	class:FastMath
subtractExact	src/org/math/plot/utils/FastMath.java	/^    public static int subtractExact(int a, int b) {$/;"	m	class:FastMath
subtractExact	src/org/math/plot/utils/FastMath.java	/^    public static long subtractExact(long a, long b) {$/;"	m	class:FastMath
swap	src/org/math/plot/DataSelectPanel.java	/^            private void swap(double a[], int i, int j) {$/;"	m	class:DataSelectPanel.ParameterRow.Sorting	file:
symetric	src/org/math/plot/plots/QuantileLayerPlot.java	/^	public boolean symetric = false;$/;"	f	class:QuantileLayerPlot
syn	src/spiking/internode/InterNodeSpike.java	/^	private Synapse syn;$/;"	f	class:InterNodeSpike	file:
syn	src/spiking/node/plasticity/Afferent.java	/^	private Synapse syn;$/;"	f	class:Afferent	file:
syn	src/spiking/node/spikes/FixedBurnSpike.java	/^	private Synapse syn;$/;"	f	class:FixedBurnSpike	file:
synMan	src/spiking/controllers/node/NodeThread.java	/^	private SynapsesManager synMan;$/;"	f	class:NodeThread	file:
synapses	src/spiking/node/SynapsesManager.java	/^	private HashMap<Synapse, Synapse> synapses;$/;"	f	class:SynapsesManager	file:
t_arp	src/spiking/node/neuron/NodeNeuronsManager.java	/^	private Double t_arp=0.3;$/;"	f	class:NodeNeuronsManager	file:
t_arp	src/utils/configuration/NeuManCfg.java	/^	private Double t_arp;$/;"	f	class:NeuManCfg	file:
table	src/org/math/plot/MatrixTablePanel.java	/^    private JTable table;$/;"	f	class:MatrixTablePanel	file:
tags	src/org/math/plot/plots/ScatterPlot.java	/^    private String[] tags;$/;"	f	class:ScatterPlot	file:
tan	src/org/math/plot/render/Projection3D.java	/^    private double tan(double x) {$/;"	m	class:Projection3D	file:
tan	src/org/math/plot/utils/FastMath.java	/^    public static double tan(double angle) {$/;"	m	class:FastMath
tanDer1DivF1Tab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] tanDer1DivF1Tab = new double[TAN_TABS_SIZE];$/;"	f	class:FastMath	file:
tanDer2DivF2Tab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] tanDer2DivF2Tab = new double[TAN_TABS_SIZE];$/;"	f	class:FastMath	file:
tanDer3DivF3Tab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] tanDer3DivF3Tab = new double[TAN_TABS_SIZE];$/;"	f	class:FastMath	file:
tanDer4DivF4Tab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] tanDer4DivF4Tab = new double[TAN_TABS_SIZE];$/;"	f	class:FastMath	file:
tanTab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] tanTab = new double[TAN_TABS_SIZE];$/;"	f	class:FastMath	file:
tan_phi	src/org/math/plot/render/Projection3D.java	/^    public double cos_phi, sin_phi, tan_phi, cos_theta, sin_theta, tan_theta;$/;"	f	class:Projection3D
tan_theta	src/org/math/plot/render/Projection3D.java	/^    public double cos_phi, sin_phi, tan_phi, cos_theta, sin_theta, tan_theta;$/;"	f	class:Projection3D
tanh	src/org/math/plot/utils/FastMath.java	/^    public static double tanh(double value) {$/;"	m	class:FastMath
taum	src/spiking/node/Node.java	/^	private Double taum;$/;"	f	class:Node	file:
taum	src/spiking/node/plasticity/AfferentManager.java	/^	private Double taum = 30.0;$/;"	f	class:AfferentManager	file:
taum	src/utils/configuration/NodeCfg.java	/^	private Double taum;$/;"	f	class:NodeCfg	file:
taup	src/spiking/node/Node.java	/^	private Double taup;$/;"	f	class:Node	file:
taup	src/spiking/node/plasticity/AfferentManager.java	/^	private Double taup = 15.0;$/;"	f	class:AfferentManager	file:
taup	src/utils/configuration/NodeCfg.java	/^	private Double taup;$/;"	f	class:NodeCfg	file:
text_Eastoffset	src/org/math/plot/render/AbstractDrawer.java	/^    protected double text_Eastoffset, text_Northoffset;$/;"	f	class:AbstractDrawer
text_Northoffset	src/org/math/plot/render/AbstractDrawer.java	/^    protected double text_Eastoffset, text_Northoffset;$/;"	f	class:AbstractDrawer
text_angle	src/org/math/plot/render/AbstractDrawer.java	/^    protected double text_angle;$/;"	f	class:AbstractDrawer
tf	src/utils/tools/NiceNode.java	/^    public Double tf;$/;"	f	class:NiceNode
theta	src/org/math/plot/render/Projection3D.java	/^    private void theta(double theta) {$/;"	m	class:Projection3D	file:
theta	src/org/math/plot/render/Projection3D.java	/^    public double theta;$/;"	f	class:Projection3D
throwError	src/org/math/plot/utils/Array.java	/^    public static void throwError(String msg) {$/;"	m	class:Array
timeMatrix	src/spiking/node/external_inputs/ExternalInput.java	/^	private NiceQueue[] timeMatrix;$/;"	f	class:ExternalInput	file:
timeMatrixInit	src/spiking/node/external_inputs/ExternalInput.java	/^	private void timeMatrixInit(){$/;"	m	class:ExternalInput	file:
timeStep	src/spiking/node/Node.java	/^	private int timeStep = -1;$/;"	f	class:Node	file:
timeStep	src/spiking/node/external_inputs/ExternalInput.java	/^	private int timeStep=1;														\/\/step$/;"	f	class:ExternalInput	file:
timeToBurn	src/spiking/internode/InterNodeBurningSpike.java	/^	private Double timeToBurn;$/;"	f	class:InterNodeBurningSpike	file:
timeToFire	src/spiking/node/neuron/Neuron.java	/^	private Double timeToFire; $/;"	f	class:Neuron	file:
timeToFire	src/utils/statistics/CollectedBurn.java	/^	private Double timeToFire;$/;"	f	class:CollectedBurn	file:
timeVector	src/spiking/node/external_inputs/ExternalInput.java	/^	private Integer [] timeVector = new Integer[fireDuration-timeStep+1];		\/\/Time Vector: duration T and step dt$/;"	f	class:ExternalInput	file:
timeVectorInit	src/spiking/node/external_inputs/ExternalInput.java	/^	private void timeVectorInit(){$/;"	m	class:ExternalInput	file:
times	src/spiking/controllers/node/NodeThread.java	/^	long[] times= new long[10];$/;"	f	class:NodeThread
times	src/spiking/simulator/SpikingNeuralSimulator.java	/^	long[] times= new long[10];$/;"	f	class:SpikingNeuralSimulator
timesBounded	src/org/math/plot/utils/NumbersUtils.java	/^    public static int timesBounded(int a, int b) {$/;"	m	class:NumbersUtils
timesBounded	src/org/math/plot/utils/NumbersUtils.java	/^    public static long timesBounded(long a, long b) {$/;"	m	class:NumbersUtils
timesExact	src/org/math/plot/utils/NumbersUtils.java	/^    public static int timesExact(int a, int b) {$/;"	m	class:NumbersUtils
timesExact	src/org/math/plot/utils/NumbersUtils.java	/^    public static long timesExact(long a, long b) {$/;"	m	class:NumbersUtils
timesToFire	src/spiking/node/neuron/NodeNeuronsManager.java	/^	private HashMap<Long, Double> timesToFire;$/;"	f	class:NodeNeuronsManager	file:
title	src/org/math/plot/components/ScalesFrame.java	/^        private String title;$/;"	f	class:ScalesFrame.ScalePanel	file:
title_field	src/org/math/plot/components/ScalesFrame.java	/^        private JTextField title_field = new JTextField();$/;"	f	class:ScalesFrame.ScalePanel	file:
title_label	src/org/math/plot/components/ScalesFrame.java	/^        private JLabel title_label = new JLabel("Title");$/;"	f	class:ScalesFrame.ScalePanel	file:
to	src/spiking/node/Node.java	/^	private Double to;$/;"	f	class:Node	file:
to	src/spiking/node/plasticity/AfferentManager.java	/^	private Double to=3.0;$/;"	f	class:AfferentManager	file:
to	src/utils/configuration/NodeCfg.java	/^	private Double to;$/;"	f	class:NodeCfg	file:
toASCIIFile	src/org/math/io/FilePrintable.java	/^    public void toASCIIFile(File f);$/;"	m	interface:FilePrintable
toASCIIFile	src/org/math/plot/DataPanel.java	/^    public abstract void toASCIIFile(File file);$/;"	m	class:DataPanel
toASCIIFile	src/org/math/plot/MatrixTablePanel.java	/^    public void toASCIIFile(File file) {$/;"	m	class:MatrixTablePanel
toASCIIFile	src/org/math/plot/plots/Plot.java	/^        public void toASCIIFile(File file) {$/;"	m	class:Plot.DefaultDataPanel
toArray	src/utils/tools/NiceQueue.java	/^    public NiceNode[] toArray(){$/;"	m	class:NiceQueue
toClipBoard	src/org/math/io/ClipBoardPrintable.java	/^    public void toClipBoard();$/;"	m	interface:ClipBoardPrintable
toClipBoard	src/org/math/plot/DataPanel.java	/^    public abstract void toClipBoard();$/;"	m	class:DataPanel
toClipBoard	src/org/math/plot/MatrixTablePanel.java	/^    public void toClipBoard() {$/;"	m	class:MatrixTablePanel
toClipBoard	src/org/math/plot/plots/Plot.java	/^        public void toClipBoard() {$/;"	m	class:Plot.DefaultDataPanel
toDMS	src/org/math/plot/utils/FastMath.java	/^    public static boolean toDMS(double angrad, IntWrapper degrees, IntWrapper minutes, DoubleWrapper seconds) {$/;"	m	class:FastMath
toDegrees	src/org/math/plot/utils/FastMath.java	/^    public static double toDegrees(boolean sign, int degrees, int minutes, double seconds) {$/;"	m	class:FastMath
toDegrees	src/org/math/plot/utils/FastMath.java	/^    public static double toDegrees(double angrad) {$/;"	m	class:FastMath
toGraphicFile	src/org/math/plot/PlotPanel.java	/^    public void toGraphicFile(File file) throws IOException {$/;"	m	class:PlotPanel
toGraphicFile	src/org/math/plot/canvas/PlotCanvas.java	/^    public void toGraphicFile(File file) throws IOException {$/;"	m	class:PlotCanvas
toInt	src/org/math/plot/utils/FastMath.java	/^    public static int toInt(long value) {$/;"	m	class:FastMath
toInt	src/org/math/plot/utils/NumbersUtils.java	/^    public static int toInt(long a) {$/;"	m	class:NumbersUtils
toIntExact	src/org/math/plot/utils/FastMath.java	/^    public static int toIntExact(long value) {$/;"	m	class:FastMath
toRadians	src/org/math/plot/utils/FastMath.java	/^    public static double toRadians(boolean sign, int degrees, int minutes, double seconds) {$/;"	m	class:FastMath
toRadians	src/org/math/plot/utils/FastMath.java	/^    public static double toRadians(double angdeg) {$/;"	m	class:FastMath
toRange	src/org/math/plot/utils/FastMath.java	/^    public static double toRange(double minValue, double maxValue, double value) {$/;"	m	class:FastMath
toRange	src/org/math/plot/utils/FastMath.java	/^    public static float toRange(float minValue, float maxValue, float value) {$/;"	m	class:FastMath
toRange	src/org/math/plot/utils/FastMath.java	/^    public static int toRange(int minValue, int maxValue, int value) {$/;"	m	class:FastMath
toRange	src/org/math/plot/utils/FastMath.java	/^    public static long toRange(long minValue, long maxValue, long value) {$/;"	m	class:FastMath
toRange	src/org/math/plot/utils/NumbersUtils.java	/^    public static double toRange(double min, double max, double a) {$/;"	m	class:NumbersUtils
toRange	src/org/math/plot/utils/NumbersUtils.java	/^    public static float toRange(float min, float max, float a) {$/;"	m	class:NumbersUtils
toRange	src/org/math/plot/utils/NumbersUtils.java	/^    public static int toRange(int min, int max, int a) {$/;"	m	class:NumbersUtils
toRange	src/org/math/plot/utils/NumbersUtils.java	/^    public static long toRange(long min, long max, long a) {$/;"	m	class:NumbersUtils
toString	src/connectivity/nodes/Node.java	/^	public String toString(){$/;"	m	class:Node
toString	src/org/math/plot/plotObjects/Base.java	/^	public String toString() {$/;"	m	class:Base
toString	src/org/math/plot/utils/Array.java	/^    public static String toString(HashMap hash) {$/;"	m	class:Array
toString	src/org/math/plot/utils/Array.java	/^    public static String toString(double[]... v) {$/;"	m	class:Array
toString	src/org/math/plot/utils/Array.java	/^    public static String toString(int[]... v) {$/;"	m	class:Array
toString	src/org/math/plot/utils/FastMath.java	/^    public String toString() {$/;"	m	class:FastMath.DoubleWrapper
toString	src/org/math/plot/utils/FastMath.java	/^    public String toString() {$/;"	m	class:FastMath.IntWrapper
toString	src/org/math/plot/utils/NumbersUtils.java	/^    public static String toString(int value) {$/;"	m	class:NumbersUtils
toString	src/org/math/plot/utils/NumbersUtils.java	/^    public static String toString(int value, int radix) {$/;"	m	class:NumbersUtils
toString	src/org/math/plot/utils/NumbersUtils.java	/^    public static String toString(int value, int radix, int paddingUpTo) {$/;"	m	class:NumbersUtils
toString	src/org/math/plot/utils/NumbersUtils.java	/^    public static String toString(long value) {$/;"	m	class:NumbersUtils
toString	src/org/math/plot/utils/NumbersUtils.java	/^    public static String toString(long value, int radix) {$/;"	m	class:NumbersUtils
toString	src/org/math/plot/utils/NumbersUtils.java	/^    public static String toString(long value, int radix, int paddingUpTo) {$/;"	m	class:NumbersUtils
toString	src/spiking/controllers/node/NodeLink.java	/^	public String toString() {$/;"	m	class:NodeLink
toString	src/spiking/internode/InterNodeBurningSpike.java	/^	public String toString(){$/;"	m	class:InterNodeBurningSpike
toString	src/spiking/node/Synapse.java	/^	public String toString() {$/;"	m	class:Synapse
toString	src/spiking/node/spikes/FixedBurnSpike.java	/^	public String toString() {$/;"	m	class:FixedBurnSpike
toString	src/utils/configuration/SpikingSimulatorCfg.java	/^	public String toString(){$/;"	m	class:SpikingSimulatorCfg
toString	src/utils/tools/CompressedFire.java	/^	public String toString() {$/;"	m	class:CompressedFire
toString	src/utils/tools/IntegerCouple.java	/^	public String toString() {$/;"	m	class:IntegerCouple
toString	src/utils/tools/LongCouple.java	/^	public String toString() {$/;"	m	class:LongCouple
toString	src/utils/tools/NiceNode.java	/^    public String toString(){$/;"	m	class:NiceNode
toStringBits	src/org/math/plot/utils/NumbersUtils.java	/^    public static String toStringBits($/;"	m	class:NumbersUtils
toStringBits	src/org/math/plot/utils/NumbersUtils.java	/^    public static String toStringBits(byte bits) {$/;"	m	class:NumbersUtils
toStringBits	src/org/math/plot/utils/NumbersUtils.java	/^    public static String toStringBits(int bits) {$/;"	m	class:NumbersUtils
toStringBits	src/org/math/plot/utils/NumbersUtils.java	/^    public static String toStringBits(long bits) {$/;"	m	class:NumbersUtils
toStringBits	src/org/math/plot/utils/NumbersUtils.java	/^    public static String toStringBits(short bits) {$/;"	m	class:NumbersUtils
toStringBits_0_32_bitPosAlreadyChecked	src/org/math/plot/utils/NumbersUtils.java	/^    private static String toStringBits_0_32_bitPosAlreadyChecked($/;"	m	class:NumbersUtils	file:
toWindow	src/org/math/plot/DataPanel.java	/^    protected abstract void toWindow();$/;"	m	class:DataPanel
toWindow	src/org/math/plot/MatrixTablePanel.java	/^    public void toWindow() {$/;"	m	class:MatrixTablePanel
toWindow	src/org/math/plot/plots/Plot.java	/^        protected void toWindow() {$/;"	m	class:Plot.DefaultDataPanel
toolBar	src/org/math/plot/DataPanel.java	/^    protected DataToolBar toolBar;$/;"	f	class:DataPanel
topLeft	src/org/math/plot/plots/HistogramPlot2D.java	/^    double[][] topLeft;$/;"	f	class:HistogramPlot2D
topNE	src/org/math/plot/plots/CloudPlot3D.java	/^    double[][] topNE;$/;"	f	class:CloudPlot3D
topNE	src/org/math/plot/plots/HistogramPlot3D.java	/^    double[][] topNE;$/;"	f	class:HistogramPlot3D
topNW	src/org/math/plot/plots/CloudPlot3D.java	/^    double[][] topNW;$/;"	f	class:CloudPlot3D
topNW	src/org/math/plot/plots/HistogramPlot3D.java	/^    double[][] topNW;$/;"	f	class:HistogramPlot3D
topRight	src/org/math/plot/plots/HistogramPlot2D.java	/^    double[][] topRight;$/;"	f	class:HistogramPlot2D
topSE	src/org/math/plot/plots/CloudPlot3D.java	/^    double[][] topSE;$/;"	f	class:CloudPlot3D
topSE	src/org/math/plot/plots/HistogramPlot3D.java	/^    double[][] topSE;$/;"	f	class:HistogramPlot3D
topSW	src/org/math/plot/plots/CloudPlot3D.java	/^    double[][] topSW;$/;"	f	class:CloudPlot3D
topSW	src/org/math/plot/plots/HistogramPlot3D.java	/^    double[][] topSW;$/;"	f	class:HistogramPlot3D
torem	src/utils/tools/IntegerCouple.java	/^	public void torem(Integer a){$/;"	m	class:IntegerCouple
torem	src/utils/tools/LongCouple.java	/^	public void torem(Long a){$/;"	m	class:LongCouple
toremDebug	src/spiking/controllers/node/NodeThread.java	/^	private int toremDebug=0;$/;"	f	class:NodeThread	file:
totalScreenRatio	src/org/math/plot/render/Projection.java	/^    public double[] totalScreenRatio = new double[]{1, 1};$/;"	f	class:Projection
total_time	src/spiking/simulator/SpikingNeuralSimulator.java	/^	private double total_time=10;$/;"	f	class:SpikingNeuralSimulator	file:
translate	src/org/math/plot/render/AWTDrawer.java	/^    public void translate(int... t) {$/;"	m	class:AWTDrawer
translate	src/org/math/plot/render/AWTDrawer3D.java	/^    public void translate(int... t) {$/;"	m	class:AWTDrawer3D
translate	src/org/math/plot/render/AbstractDrawer.java	/^    public abstract void translate(int... t);$/;"	m	class:AbstractDrawer
translate	src/org/math/plot/render/Projection.java	/^    public void translate(int[] screenTranslation) {$/;"	m	class:Projection
trueXmax	src/org/math/plot/plotObjects/Base.java	/^	protected double[] trueXmax;$/;"	f	class:Base
trueXmin	src/org/math/plot/plotObjects/Base.java	/^	protected double[] trueXmin;$/;"	f	class:Base
twoPow	src/org/math/plot/utils/FastMath.java	/^    public static double twoPow(int power) {$/;"	m	class:FastMath
twoPow	src/org/math/plot/utils/NumbersUtils.java	/^    public static double twoPow(int power) {$/;"	m	class:NumbersUtils
twoPowTab	src/org/math/plot/utils/FastMath.java	/^    private static final double[] twoPowTab = new double[(MAX_DOUBLE_EXPONENT-MIN_DOUBLE_EXPONENT)+1];$/;"	f	class:FastMath	file:
type	src/org/math/plot/plots/ScatterPlot.java	/^    private int type;$/;"	f	class:ScatterPlot	file:
type	src/spiking/node/NodesInterconnection.java	/^	private Integer type=0;$/;"	f	class:NodesInterconnection	file:
type	src/spiking/node/external_inputs/ExternalInput.java	/^	private int type;	$/;"	f	class:ExternalInput	file:
ulp	src/org/math/plot/utils/FastMath.java	/^    public static double ulp(double d) {$/;"	m	class:FastMath
ulp	src/org/math/plot/utils/FastMath.java	/^    public static float ulp(float f) {$/;"	m	class:FastMath
update	src/org/math/plot/DataPanel.java	/^    public void update() {$/;"	m	class:DataPanel
update	src/org/math/plot/MatrixTablePanel.java	/^    public void update() {$/;"	m	class:MatrixTablePanel
update	src/org/math/plot/ParametersPanel.java	/^	private void update() {$/;"	m	class:ParametersPanel	file:
update	src/org/math/plot/components/LegendPanel.java	/^        public void update() {$/;"	m	class:LegendPanel.Legend
update	src/org/math/plot/components/ScalesFrame.java	/^        public void update() {$/;"	m	class:ScalesFrame.ScalePanel
updateBoundsFields	src/org/math/plot/components/ScalesFrame.java	/^        private void updateBoundsFields() {$/;"	m	class:ScalesFrame.ScalePanel	file:
updateCoordsCenterScreen	src/org/math/plot/render/Projection3D.java	/^    protected void updateCoordsCenterScreen() {$/;"	m	class:Projection3D
updateInterNodeSpikes	src/spiking/node/NodesManager.java	/^	private void updateInterNodeSpikes(){$/;"	m	class:NodesManager	file:
updateInterNodeSpikes	src/spiking/node/NodesManager.java~	/^	private void updateInterNodeSpikes(){$/;"	m	class:NodesManager	file:
updateLegends	src/org/math/plot/components/LegendPanel.java	/^    public void updateLegends() {$/;"	m	class:LegendPanel
updateSelectedData	src/org/math/plot/DataSelectPanel.java	/^    void updateSelectedData() {$/;"	m	class:DataSelectPanel
updateSelectedData	src/org/math/plot/DataSelectTable.java	/^	void updateSelectedData() {$/;"	m	class:DataSelectTable
updateSize	src/org/math/plot/components/LegendPanel.java	/^    private void updateSize() {$/;"	m	class:LegendPanel	file:
updateValues	src/org/math/plot/ParametersPanel.java	/^	private void updateValues() {$/;"	m	class:ParametersPanel	file:
updateValuesIndex	src/org/math/plot/ParametersPanel.java	/^	private void updateValuesIndex() {$/;"	m	class:ParametersPanel	file:
use_pattern	src/org/math/plot/plots/ScatterPlot.java	/^    private boolean use_pattern;$/;"	f	class:ScatterPlot	file:
utils.configuration	src/utils/configuration/NeuManCfg.java	/^package utils.configuration;$/;"	p
utils.configuration	src/utils/configuration/NodeCfg.java	/^package utils.configuration;$/;"	p
utils.configuration	src/utils/configuration/RegionInterconnectionCfg.java	/^package utils.configuration;$/;"	p
utils.configuration	src/utils/configuration/SpikingConfigManager.java	/^package utils.configuration;$/;"	p
utils.configuration	src/utils/configuration/SpikingSimulatorCfg.java	/^package utils.configuration;$/;"	p
utils.constants	src/utils/constants/Constants.java	/^package utils.constants;$/;"	p
utils.exceptions	src/utils/exceptions/BadCurveException.java	/^package utils.exceptions;$/;"	p
utils.exceptions	src/utils/exceptions/BadParametersException.java	/^package utils.exceptions;$/;"	p
utils.experiment	src/utils/experiment/Experiment.java	/^package utils.experiment;$/;"	p
utils.math	src/utils/math/FastMath.java	/^package utils.math;$/;"	p
utils.plotter	src/utils/plotter/FastScatterPlotter.java	/^package utils.plotter;$/;"	p
utils.plotter	src/utils/plotter/ScatterPlotter.java	/^package utils.plotter;$/;"	p
utils.statistics	src/utils/statistics/CollectedBurn.java	/^package utils.statistics;$/;"	p
utils.statistics	src/utils/statistics/CollectedFire.java	/^package utils.statistics;$/;"	p
utils.statistics	src/utils/statistics/StatisticsCollector.java	/^package utils.statistics;$/;"	p
utils.tools	src/utils/tools/CompressedFire.java	/^package utils.tools;$/;"	p
utils.tools	src/utils/tools/IntegerCouple.java	/^package utils.tools;$/;"	p
utils.tools	src/utils/tools/LongCouple.java	/^package utils.tools;$/;"	p
utils.tools	src/utils/tools/NiceNode.java	/^package utils.tools;$/;"	p
utils.tools	src/utils/tools/NiceQueue.java	/^package utils.tools;$/;"	p
utils.tools	src/utils/tools/Shuffler.java	/^package utils.tools;$/;"	p
value	src/org/math/plot/utils/FastMath.java	/^    public double value;$/;"	f	class:FastMath.DoubleWrapper
value	src/org/math/plot/utils/FastMath.java	/^    public int value;$/;"	f	class:FastMath.IntWrapper
verbose	src/connectivity/conn_package/PackageReader.java	/^	private static Boolean verbose = true;$/;"	f	class:PackageReader	file:
verbose	src/spiking/controllers/node/NodeThread.java	/^	private final static Boolean verbose = true;$/;"	f	class:NodeThread	file:
verbose	src/spiking/node/Node.java	/^	private final static Boolean verbose = true;$/;"	f	class:Node	file:
verbose	src/spiking/node/NodesManager.java	/^	private final static Boolean verbose = true;$/;"	f	class:NodesManager	file:
verbose	src/spiking/node/NodesManager.java~	/^	private final static Boolean verbose = true;$/;"	f	class:NodesManager	file:
verbose	src/spiking/node/Synapse.java	/^	private final static Boolean verbose = true;$/;"	f	class:Synapse	file:
verbose	src/spiking/node/SynapsesManager.java	/^	private final static Boolean verbose = true;$/;"	f	class:SynapsesManager	file:
verbose	src/spiking/node/external_inputs/ExternalInput.java	/^	private final static Boolean verbose = true;$/;"	f	class:ExternalInput	file:
verbose	src/spiking/node/neuron/NodeNeuronsManager.java	/^	private final static Boolean verbose = true;$/;"	f	class:NodeNeuronsManager	file:
verbose	src/spiking/simulator/SpikingNeuralSimulator.java	/^	private final static Boolean verbose = true;$/;"	f	class:SpikingNeuralSimulator	file:
vertexNum	src/connectivity/conn_package/PackageReader.java	/^	private Integer vertexNum;$/;"	f	class:PackageReader	file:
viewAdjustBounds	src/org/math/plot/components/PlotToolBar.java	/^    public void viewAdjustBounds(boolean visible) {$/;"	m	class:PlotToolBar
viewHeaders	src/org/math/plot/MatrixTablePanel.java	/^    private boolean viewHeaders = false;$/;"	f	class:MatrixTablePanel	file:
visible	src/org/math/plot/components/DatasFrame.java	/^		JCheckBox visible;$/;"	f	class:DatasFrame.DataPanel
visible	src/org/math/plot/plotObjects/Axis.java	/^	boolean visible = true;$/;"	f	class:Axis
visible	src/org/math/plot/plotObjects/BasePlot.java	/^	protected boolean visible = true;$/;"	f	class:BasePlot
visible	src/org/math/plot/plotObjects/Label.java	/^	boolean visible = true;$/;"	f	class:Label
visible	src/org/math/plot/plotObjects/Line.java	/^	boolean visible = true;$/;"	f	class:Line
visible	src/org/math/plot/plotObjects/PaintImage.java	/^    protected boolean visible = true;$/;"	f	class:PaintImage
visible	src/org/math/plot/plotObjects/RasterImage.java	/^	boolean visible = true;$/;"	f	class:RasterImage
visible	src/org/math/plot/plots/Plot.java	/^        JCheckBox visible;$/;"	f	class:Plot.DefaultDataPanel
visible	src/org/math/plot/plots/Plot.java	/^    public boolean visible = true;$/;"	f	class:Plot
w	src/org/math/io/littleendian/LEDataInputStream.java	/^    byte w[];$/;"	f	class:LEDataInputStream
w	src/org/math/io/littleendian/LEDataOutputStream.java	/^    byte w[];$/;"	f	class:LEDataOutputStream
w	src/org/math/io/littleendian/LERandomAccessFile.java	/^    byte w[]; \/\/ work array for buffering input\/output$/;"	f	class:LERandomAccessFile
w_pre_exc	src/spiking/node/Node.java	/^	private Double w_pre_exc;$/;"	f	class:Node	file:
w_pre_exc	src/utils/configuration/NodeCfg.java	/^	private Double w_pre_exc;$/;"	f	class:NodeCfg	file:
w_pre_inh	src/spiking/node/Node.java	/^	private Double w_pre_inh;$/;"	f	class:Node	file:
w_pre_inh	src/utils/configuration/NodeCfg.java	/^	private Double w_pre_inh;$/;"	f	class:NodeCfg	file:
wait_event	src/utils/statistics/StatisticsCollector.java	/^	private void wait_event() {$/;"	m	class:StatisticsCollector	file:
width_constant	src/org/math/plot/plots/CloudPlot2D.java	/^    double[] width_constant = {-1, -1};$/;"	f	class:CloudPlot2D
width_constant	src/org/math/plot/plots/CloudPlot3D.java	/^    double[] width_constant = {-1, -1, -1};$/;"	f	class:CloudPlot3D
width_constant	src/org/math/plot/plots/HistogramPlot2D.java	/^    double width_constant = -1;$/;"	f	class:HistogramPlot2D
width_constant	src/org/math/plot/plots/HistogramPlot3D.java	/^    double[] width_constant = {-1, -1};$/;"	f	class:HistogramPlot3D
widths	src/org/math/plot/plots/BoxPlot2D.java	/^    double[][] widths;$/;"	f	class:BoxPlot2D
widths	src/org/math/plot/plots/BoxPlot3D.java	/^    double[][] widths;$/;"	f	class:BoxPlot3D
widths	src/org/math/plot/plots/HistogramPlot2D.java	/^    double[] widths;$/;"	f	class:HistogramPlot2D
widths	src/org/math/plot/plots/HistogramPlot3D.java	/^    double[][] widths;$/;"	f	class:HistogramPlot3D
windowActivated	src/org/math/plot/components/ScalesFrame.java	/^    public void windowActivated(WindowEvent e) {$/;"	m	class:ScalesFrame
windowClosed	src/org/math/plot/components/ScalesFrame.java	/^    public void windowClosed(WindowEvent e) {$/;"	m	class:ScalesFrame
windowClosing	src/org/math/plot/components/ScalesFrame.java	/^    public void windowClosing(WindowEvent e) {$/;"	m	class:ScalesFrame
windowDeactivated	src/org/math/plot/components/ScalesFrame.java	/^    public void windowDeactivated(WindowEvent e) {$/;"	m	class:ScalesFrame
windowDeiconified	src/org/math/plot/components/ScalesFrame.java	/^    public void windowDeiconified(WindowEvent e) {$/;"	m	class:ScalesFrame
windowGainedFocus	src/org/math/plot/components/ScalesFrame.java	/^    public void windowGainedFocus(WindowEvent e) {$/;"	m	class:ScalesFrame
windowIconified	src/org/math/plot/components/ScalesFrame.java	/^    public void windowIconified(WindowEvent e) {$/;"	m	class:ScalesFrame
windowLostFocus	src/org/math/plot/components/ScalesFrame.java	/^    public void windowLostFocus(WindowEvent e) {$/;"	m	class:ScalesFrame
windowOpened	src/org/math/plot/components/ScalesFrame.java	/^    public void windowOpened(WindowEvent e) {$/;"	m	class:ScalesFrame
wireInit	src/spiking/node/Node.java	/^	private void wireInit(){$/;"	m	class:Node	file:
write	src/org/math/io/files/ASCIIFile.java	/^    public static void write(File f, String t) {$/;"	m	class:ASCIIFile
write	src/org/math/io/files/ASCIIFile.java	/^    public void write(String text, boolean append) {$/;"	m	class:ASCIIFile
write	src/org/math/io/littleendian/LEDataOutputStream.java	/^    public final synchronized void write(byte b[], int off, int len)$/;"	m	class:LEDataOutputStream
write	src/org/math/io/littleendian/LEDataOutputStream.java	/^    public final synchronized void write(int b) throws IOException {$/;"	m	class:LEDataOutputStream
write	src/org/math/io/littleendian/LEDataOutputStream.java	/^    public final void write(byte b[]) throws IOException {$/;"	m	class:LEDataOutputStream
write	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final synchronized void write(byte b[], int off, int len)$/;"	m	class:LERandomAccessFile
write	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final synchronized void write(int b) throws IOException {$/;"	m	class:LERandomAccessFile
write	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final void write(byte b[]) throws IOException {$/;"	m	class:LERandomAccessFile
write	src/org/math/io/stream/BinaryOutputStream.java	/^    public void write(int i) {$/;"	m	class:BinaryOutputStream
writeBoolean	src/org/math/io/littleendian/LEDataOutputStream.java	/^    public final void writeBoolean(boolean v) throws IOException {$/;"	m	class:LEDataOutputStream
writeBoolean	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final void writeBoolean(boolean v) throws IOException {$/;"	m	class:LERandomAccessFile
writeByte	src/org/math/io/files/BinaryFile.java	/^    public void writeByte(byte b, boolean append) {$/;"	m	class:BinaryFile
writeByte	src/org/math/io/littleendian/LEDataOutputStream.java	/^    public final void writeByte(int v) throws IOException {$/;"	m	class:LEDataOutputStream
writeByte	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final void writeByte(int v) throws IOException {$/;"	m	class:LERandomAccessFile
writeByte	src/org/math/io/stream/BinaryOutputStream.java	/^    public void writeByte(byte b, boolean append) {$/;"	m	class:BinaryOutputStream
writeByteArray	src/org/math/io/files/BinaryFile.java	/^    public void writeByteArray(byte[] bytes, boolean append) {$/;"	m	class:BinaryFile
writeByteArray	src/org/math/io/stream/BinaryOutputStream.java	/^    public void writeByteArray(byte[] bytes, boolean append) {$/;"	m	class:BinaryOutputStream
writeBytes	src/org/math/io/littleendian/LEDataOutputStream.java	/^    public final void writeBytes(String s) throws IOException {$/;"	m	class:LEDataOutputStream
writeBytes	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final void writeBytes(String s) throws IOException {$/;"	m	class:LERandomAccessFile
writeChar	src/org/math/io/littleendian/LEDataOutputStream.java	/^    public final void writeChar(int v) throws IOException {$/;"	m	class:LEDataOutputStream
writeChar	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final void writeChar(int v) throws IOException {$/;"	m	class:LERandomAccessFile
writeChars	src/org/math/io/littleendian/LEDataOutputStream.java	/^    public final void writeChars(String s) throws IOException {$/;"	m	class:LEDataOutputStream
writeChars	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final void writeChars(String s) throws IOException {$/;"	m	class:LERandomAccessFile
writeDouble	src/org/math/io/files/BinaryFile.java	/^    public void writeDouble(double d, boolean append) {$/;"	m	class:BinaryFile
writeDouble	src/org/math/io/littleendian/LEDataOutputStream.java	/^    public final void writeDouble(double v) throws IOException {$/;"	m	class:LEDataOutputStream
writeDouble	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final void writeDouble(double v) throws IOException {$/;"	m	class:LERandomAccessFile
writeDouble	src/org/math/io/stream/BinaryOutputStream.java	/^    public void writeDouble(double d, boolean append) {$/;"	m	class:BinaryOutputStream
writeDoubleArray	src/org/math/io/files/ASCIIFile.java	/^    public static void writeDoubleArray(File f, double[] array) {$/;"	m	class:ASCIIFile
writeDoubleArray	src/org/math/io/files/ASCIIFile.java	/^    public static void writeDoubleArray(File f, double[][] array) {$/;"	m	class:ASCIIFile
writeDoubleArray	src/org/math/io/files/BinaryFile.java	/^    public static void writeDoubleArray(File f, double[] array, String endian) {$/;"	m	class:BinaryFile
writeDoubleArray	src/org/math/io/files/BinaryFile.java	/^    public void writeDoubleArray(double[] array, boolean append) {$/;"	m	class:BinaryFile
writeDoubleArray	src/org/math/io/stream/BinaryOutputStream.java	/^    public static void writeDoubleArray(OutputStream out, double[] array,$/;"	m	class:BinaryOutputStream
writeDoubleArray	src/org/math/io/stream/BinaryOutputStream.java	/^    public void writeDoubleArray(double[] array, boolean append) {$/;"	m	class:BinaryOutputStream
writeFloat	src/org/math/io/files/BinaryFile.java	/^    public void writeFloat(float f, boolean append) {$/;"	m	class:BinaryFile
writeFloat	src/org/math/io/littleendian/LEDataOutputStream.java	/^    public final void writeFloat(float v) throws IOException {$/;"	m	class:LEDataOutputStream
writeFloat	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final void writeFloat(float v) throws IOException {$/;"	m	class:LERandomAccessFile
writeFloat	src/org/math/io/stream/BinaryOutputStream.java	/^    public void writeFloat(float f, boolean append) {$/;"	m	class:BinaryOutputStream
writeFloatArray	src/org/math/io/files/BinaryFile.java	/^    public static void writeFloatArray(File f, float[] array, String endian) {$/;"	m	class:BinaryFile
writeFloatArray	src/org/math/io/files/BinaryFile.java	/^    public void writeFloatArray(float[] array, boolean append) {$/;"	m	class:BinaryFile
writeFloatArray	src/org/math/io/stream/BinaryOutputStream.java	/^    public static void writeFloatArray(OutputStream out, float[] array,$/;"	m	class:BinaryOutputStream
writeFloatArray	src/org/math/io/stream/BinaryOutputStream.java	/^    public void writeFloatArray(float[] array, boolean append) {$/;"	m	class:BinaryOutputStream
writeInt	src/org/math/io/files/BinaryFile.java	/^    public void writeInt(int i, boolean append) {$/;"	m	class:BinaryFile
writeInt	src/org/math/io/littleendian/LEDataOutputStream.java	/^    public final void writeInt(int v) throws IOException {$/;"	m	class:LEDataOutputStream
writeInt	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final void writeInt(int v) throws IOException {$/;"	m	class:LERandomAccessFile
writeInt	src/org/math/io/stream/BinaryOutputStream.java	/^    public void writeInt(int i, boolean append) {$/;"	m	class:BinaryOutputStream
writeIntArray	src/org/math/io/files/ASCIIFile.java	/^    public static void writeIntArray(File f, int[] array) {$/;"	m	class:ASCIIFile
writeIntArray	src/org/math/io/files/ASCIIFile.java	/^    public static void writeIntArray(File f, int[][] array) {$/;"	m	class:ASCIIFile
writeIntArray	src/org/math/io/files/BinaryFile.java	/^    public static void writeIntArray(File f, int[] array, String endian) {$/;"	m	class:BinaryFile
writeIntArray	src/org/math/io/files/BinaryFile.java	/^    public void writeIntArray(int[] array, boolean append) {$/;"	m	class:BinaryFile
writeIntArray	src/org/math/io/stream/BinaryOutputStream.java	/^    public static void writeIntArray(OutputStream out, int[] array,$/;"	m	class:BinaryOutputStream
writeIntArray	src/org/math/io/stream/BinaryOutputStream.java	/^    public void writeIntArray(int[] array, boolean append) {$/;"	m	class:BinaryOutputStream
writeLong	src/org/math/io/littleendian/LEDataOutputStream.java	/^    public final void writeLong(long v) throws IOException {$/;"	m	class:LEDataOutputStream
writeLong	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final void writeLong(long v) throws IOException {$/;"	m	class:LERandomAccessFile
writeShort	src/org/math/io/littleendian/LEDataOutputStream.java	/^    public final void writeShort(int v) throws IOException {$/;"	m	class:LEDataOutputStream
writeShort	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final void writeShort(int v) throws IOException {$/;"	m	class:LERandomAccessFile
writeUTF	src/org/math/io/littleendian/LEDataOutputStream.java	/^    public final void writeUTF(String str) throws IOException {$/;"	m	class:LEDataOutputStream
writeUTF	src/org/math/io/littleendian/LERandomAccessFile.java	/^    public final void writeUTF(String str) throws IOException {$/;"	m	class:LERandomAccessFile
wrotes_split	src/utils/statistics/StatisticsCollector.java	/^	private volatile int wrotes_split=0;$/;"	f	class:StatisticsCollector	file:
x	src/connectivity/nodes/Node.java	/^	private Double x,y,z;$/;"	f	class:Node	file:
x0	src/org/math/plot/render/Projection3D.java	/^    public double x0, y0, z0;$/;"	f	class:Projection3D
xaxis	src/org/math/plot/DataSelectPanel.java	/^        JRadioButton xaxis, yaxis, zaxis;$/;"	f	class:DataSelectPanel.ParameterRow
xaxis	src/org/math/plot/DataSelectTable.java	/^		JRadioButton xaxis, yaxis, zaxis;$/;"	f	class:DataSelectTable.ParameterRow
xyzNW	src/org/math/plot/plotObjects/PaintImage.java	/^    protected double[] xyzSW, xyzSE, xyzNW;$/;"	f	class:PaintImage
xyzNW	src/org/math/plot/plotObjects/RasterImage.java	/^	double[] xyzSW, xyzSE,xyzNW;$/;"	f	class:RasterImage
xyzSE	src/org/math/plot/plotObjects/PaintImage.java	/^    protected double[] xyzSW, xyzSE, xyzNW;$/;"	f	class:PaintImage
xyzSE	src/org/math/plot/plotObjects/RasterImage.java	/^	double[] xyzSW, xyzSE,xyzNW;$/;"	f	class:RasterImage
xyzSW	src/org/math/plot/plotObjects/PaintImage.java	/^    protected double[] xyzSW, xyzSE, xyzNW;$/;"	f	class:PaintImage
xyzSW	src/org/math/plot/plotObjects/RasterImage.java	/^	double[] xyzSW, xyzSE,xyzNW;$/;"	f	class:RasterImage
y	src/connectivity/nodes/Node.java	/^	private Double x,y,z;$/;"	f	class:Node	file:
y0	src/org/math/plot/render/Projection3D.java	/^    public double x0, y0, z0;$/;"	f	class:Projection3D
yaxis	src/org/math/plot/DataSelectPanel.java	/^        JRadioButton xaxis, yaxis, zaxis;$/;"	f	class:DataSelectPanel.ParameterRow
yaxis	src/org/math/plot/DataSelectTable.java	/^		JRadioButton xaxis, yaxis, zaxis;$/;"	f	class:DataSelectTable.ParameterRow
z	src/connectivity/nodes/Node.java	/^	private Double x,y,z;$/;"	f	class:Node	file:
z0	src/org/math/plot/render/Projection3D.java	/^    public double x0, y0, z0;$/;"	f	class:Projection3D
zaxis	src/org/math/plot/DataSelectPanel.java	/^        JRadioButton xaxis, yaxis, zaxis;$/;"	f	class:DataSelectPanel.ParameterRow
zaxis	src/org/math/plot/DataSelectTable.java	/^		JRadioButton xaxis, yaxis, zaxis;$/;"	f	class:DataSelectTable.ParameterRow
zeroDouble	src/connectivity/conn_package/PackageReader.java	/^	private final static Double zeroDouble = new Double (0);$/;"	f	class:PackageReader	file:
t	src/org/math/plot/icons/rotation.png	/^J<i>ޗ1*bLŏsz9~Mǧt;DWFQQE̝nABRj=iH$/;"	
	src/org/math/plot/icons/topngfile.png	/^^s9]%"O,/;"	
y	src/org/math/plot/icons/rotation.png	/^/;"	
